Wall clock time and date at job start Wed Apr 1 2020 04:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47048 * 2 1 4 4 O 1.42904 * 109.47070 * 120.00282 * 2 1 3 5 5 C 1.35683 * 116.99741 * 150.00319 * 4 2 1 6 6 C 1.38899 * 119.62082 * 180.02562 * 5 4 2 7 7 C 1.39569 * 118.94773 * 179.74275 * 6 5 4 8 8 C 1.48158 * 120.89168 * 180.24788 * 7 6 5 9 9 O 1.21513 * 120.00396 * 0.22123 * 8 7 6 10 10 N 1.34778 * 120.00011 * 180.22324 * 8 7 6 11 11 C 1.46497 * 120.00310 * 179.97438 * 10 8 7 12 12 H 1.09003 * 109.47070 * 35.00439 * 11 10 8 13 13 C 1.52998 * 109.47294 * 275.00286 * 11 10 8 14 14 C 1.53008 * 109.46868 * 179.97438 * 13 11 10 15 15 C 1.52995 * 109.47225 * 60.00096 * 14 13 11 16 16 C 1.52998 * 109.47119 * 299.99751 * 15 14 13 17 17 H 1.09008 * 109.47145 * 300.00315 * 16 15 14 18 18 N 1.46495 * 109.47179 * 180.02562 * 16 15 14 19 19 C 1.36934 * 120.00157 * 85.00051 * 18 16 15 20 20 H 1.07996 * 120.00385 * 359.97438 * 19 18 16 21 21 C 1.38822 * 120.00072 * 180.02562 * 19 18 16 22 22 N 1.31620 * 119.99640 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99977 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47047 * 89.99930 * 23 21 19 25 25 H 1.48503 * 109.47051 * 209.99667 * 23 21 19 26 26 H 1.48501 * 109.47160 * 329.99873 * 23 21 19 27 27 C 1.52998 * 109.47412 * 154.99753 * 11 10 8 28 28 C 1.39965 * 118.21576 * 0.46879 * 7 6 5 29 29 C 1.37983 * 119.13532 * 359.52397 * 28 7 6 30 30 N 1.31913 * 120.97368 * 0.23914 * 29 28 7 31 31 H 1.09002 * 109.46922 * 299.99843 * 1 2 3 32 32 H 1.09004 * 109.46785 * 59.99592 * 1 2 3 33 33 H 1.08992 * 109.47566 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46922 * 240.00157 * 2 1 3 35 35 H 1.08995 * 109.47656 * 300.00107 * 3 2 1 36 36 H 1.09002 * 109.47131 * 60.00285 * 3 2 1 37 37 H 1.09007 * 109.46944 * 180.02562 * 3 2 1 38 38 H 1.08004 * 120.52191 * 0.02562 * 6 5 4 39 39 H 0.97004 * 119.99908 * 359.97438 * 10 8 7 40 40 H 1.08996 * 109.47027 * 299.99213 * 13 11 10 41 41 H 1.08996 * 109.47205 * 59.99945 * 13 11 10 42 42 H 1.08996 * 109.46745 * 299.99498 * 14 13 11 43 43 H 1.09001 * 109.46517 * 180.02562 * 14 13 11 44 44 H 1.09000 * 109.47148 * 179.97438 * 15 14 13 45 45 H 1.08998 * 109.47284 * 59.99406 * 15 14 13 46 46 H 0.97000 * 119.99912 * 264.99471 * 18 16 15 47 47 H 0.96998 * 119.99628 * 180.02562 * 22 21 19 48 48 H 1.09005 * 109.47175 * 300.00824 * 27 11 10 49 49 H 1.09003 * 109.47178 * 60.00181 * 27 11 10 50 50 H 1.08002 * 120.43609 * 179.80913 * 28 7 6 51 51 H 1.07990 * 119.51235 * 180.25180 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.1988 -1.3130 1.0652 6 6 3.7129 -1.9860 2.1661 7 6 4.9381 -2.6433 2.0444 8 6 5.5237 -3.3789 3.1895 9 8 4.9344 -3.4189 4.2514 10 7 6.7102 -4.0036 3.0533 11 6 7.2896 -4.7305 4.1856 12 1 6.4918 -5.1917 4.7678 13 6 8.0698 -3.7569 5.0712 14 6 8.6744 -4.5161 6.2541 15 6 9.6188 -5.6017 5.7344 16 6 8.8386 -6.5753 4.8488 17 1 8.0404 -7.0361 5.4309 18 7 9.7428 -7.6151 4.3517 19 6 9.9996 -8.7219 5.1161 20 1 9.5359 -8.8280 6.0857 21 6 10.8569 -9.7070 4.6452 22 7 11.4224 -9.5774 3.4638 23 14 11.2078 -11.2164 5.6883 24 1 10.2170 -12.2768 5.3735 25 1 12.5757 -11.7140 5.3944 26 1 11.1096 -10.8582 7.1261 27 6 8.2341 -5.8159 3.6655 28 6 5.6009 -2.5851 0.8130 29 6 5.0198 -1.8944 -0.2306 30 7 3.8576 -1.2888 -0.0803 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.6767 1.9564 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 3.1300 1.4425 -0.0005 38 1 3.1710 -2.0041 3.1002 39 1 7.1805 -3.9720 2.2055 40 1 8.8676 -3.2958 4.4890 41 1 7.3969 -2.9837 5.4418 42 1 7.8763 -4.9768 6.8362 43 1 9.2298 -3.8223 6.8852 44 1 10.0499 -6.1422 6.5771 45 1 10.4168 -5.1409 5.1523 46 1 10.1595 -7.5198 3.4810 47 1 12.0211 -10.2660 3.1346 48 1 7.6782 -6.5095 3.0345 49 1 9.0319 -5.3548 3.0832 50 1 6.5524 -3.0783 0.6800 51 1 5.5240 -1.8490 -1.1846 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981453923.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:25 Heat of formation + Delta-G solvation = -65.250953 kcal Electronic energy + Delta-G solvation = -29809.763484 eV Core-core repulsion = 25708.087211 eV Total energy + Delta-G solvation = -4101.676274 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.00725 -40.99018 -39.51934 -38.88866 -36.30106 -35.01136 -34.25548 -33.73499 -32.89754 -31.31030 -30.56676 -29.39484 -28.16996 -26.18224 -25.65400 -24.44023 -23.51095 -23.08855 -22.15949 -21.45561 -20.88198 -19.83705 -19.04231 -18.29871 -17.77233 -16.99505 -16.86263 -16.79938 -16.45105 -16.17061 -15.91146 -15.45713 -15.45465 -15.23350 -15.06323 -15.00340 -14.85536 -14.67194 -14.26073 -14.08993 -13.59909 -13.40895 -13.28859 -13.19504 -13.02569 -12.89524 -12.86975 -12.82754 -12.26837 -12.16166 -12.03799 -11.96523 -11.94338 -11.80252 -11.65606 -11.61655 -11.39403 -11.14940 -11.07086 -10.86348 -10.66330 -10.14504 -9.59610 -8.98188 -7.93016 -5.20234 -0.43054 0.07432 1.48342 1.48890 1.57188 1.71650 1.75028 2.14741 2.57455 2.74181 3.22325 3.40208 3.44348 3.62891 3.84878 3.86705 3.88400 3.98412 4.02064 4.02867 4.04671 4.26745 4.27637 4.31626 4.41699 4.53002 4.58333 4.60943 4.66069 4.69356 4.71120 4.77683 4.82800 4.84721 4.88569 4.96288 5.01769 5.10610 5.17106 5.19750 5.23095 5.25600 5.33644 5.36047 5.41895 5.51776 5.54663 5.66678 6.21337 6.29928 6.41027 6.71610 7.04707 7.36646 8.12541 8.36302 9.30169 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023270 B = 0.001743 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.978688 B =16060.599898 C =16513.734775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.074 3.926 3 C -0.164 4.164 4 O -0.316 6.316 5 C 0.312 3.688 6 C -0.154 4.154 7 C -0.059 4.059 8 C 0.558 3.442 9 O -0.568 6.568 10 N -0.698 5.698 11 C 0.158 3.842 12 H 0.071 0.929 13 C -0.117 4.117 14 C -0.107 4.107 15 C -0.126 4.126 16 C 0.176 3.824 17 H 0.035 0.965 18 N -0.734 5.734 19 C -0.238 4.238 20 H 0.071 0.929 21 C -0.073 4.073 22 N -0.967 5.967 23 Si 0.967 3.033 24 H -0.289 1.289 25 H -0.295 1.295 26 H -0.272 1.272 27 C -0.115 4.115 28 C -0.170 4.170 29 C 0.143 3.857 30 N -0.533 5.533 31 H 0.064 0.936 32 H 0.099 0.901 33 H 0.058 0.942 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.060 0.940 37 H 0.048 0.952 38 H 0.138 0.862 39 H 0.416 0.584 40 H 0.078 0.922 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.076 0.924 44 H 0.040 0.960 45 H 0.055 0.945 46 H 0.375 0.625 47 H 0.250 0.750 48 H 0.063 0.937 49 H 0.080 0.920 50 H 0.175 0.825 51 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.628 23.479 -10.453 30.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.018 3.982 3 C -0.221 4.221 4 O -0.224 6.224 5 C 0.134 3.866 6 C -0.176 4.176 7 C -0.070 4.070 8 C 0.345 3.655 9 O -0.447 6.447 10 N -0.349 5.349 11 C 0.053 3.947 12 H 0.089 0.911 13 C -0.156 4.156 14 C -0.146 4.146 15 C -0.167 4.167 16 C 0.067 3.933 17 H 0.053 0.947 18 N -0.374 5.374 19 C -0.370 4.370 20 H 0.089 0.911 21 C -0.266 4.266 22 N -0.618 5.618 23 Si 0.796 3.204 24 H -0.216 1.216 25 H -0.222 1.222 26 H -0.197 1.197 27 C -0.154 4.154 28 C -0.190 4.190 29 C -0.012 4.012 30 N -0.257 5.257 31 H 0.083 0.917 32 H 0.118 0.882 33 H 0.077 0.923 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.156 0.844 39 H 0.255 0.745 40 H 0.097 0.903 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.094 0.906 44 H 0.059 0.941 45 H 0.074 0.926 46 H 0.207 0.793 47 H 0.059 0.941 48 H 0.082 0.918 49 H 0.099 0.901 50 H 0.192 0.808 51 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -17.610 23.790 -10.017 31.248 hybrid contribution 1.083 -1.529 0.602 1.968 sum -16.527 22.260 -9.415 29.280 Atomic orbital electron populations 1.21935 0.91368 1.03130 1.04094 1.22615 0.95652 0.92995 0.86901 1.22189 1.01221 0.95089 1.03597 1.86309 1.31355 1.64525 1.40180 1.19662 0.86742 0.90669 0.89548 1.21093 0.96812 1.00263 0.99447 1.20058 0.94727 0.97492 0.94724 1.18359 0.81070 0.78821 0.87219 1.90777 1.62142 1.62098 1.29671 1.45838 1.20542 1.52229 1.16321 1.20836 0.95100 0.91722 0.87025 0.91114 1.21823 0.99420 0.97565 0.96745 1.21414 0.98593 0.97245 0.97298 1.22096 0.98555 0.96640 0.99369 1.20320 0.91225 0.88224 0.93498 0.94667 1.42544 1.54075 1.20345 1.20437 1.19581 1.20861 0.97132 0.99385 0.91057 1.25461 1.00860 1.01847 0.98387 1.69793 1.35923 1.36051 1.19983 0.85235 0.76585 0.80003 0.78532 1.21645 1.22207 1.19721 1.21891 0.98584 0.96567 0.98325 1.22522 1.02803 1.01910 0.91784 1.23086 0.88579 0.89422 1.00138 1.67232 1.11324 1.23286 1.23896 0.91653 0.88198 0.92267 0.89536 0.88974 0.92105 0.93296 0.84383 0.74545 0.90347 0.92071 0.92439 0.90583 0.94108 0.92579 0.79334 0.94105 0.91797 0.90116 0.80790 0.77799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.56 71.98 0.69 -0.88 16 2 C 0.07 1.09 3.11 30.59 0.10 1.19 16 3 C -0.16 -2.01 9.53 71.98 0.69 -1.32 16 4 O -0.32 -6.59 9.76 -90.02 -0.88 -7.47 16 5 C 0.31 6.63 7.45 84.80 0.63 7.26 16 6 C -0.15 -3.52 9.61 22.75 0.22 -3.30 16 7 C -0.06 -1.20 5.91 -19.90 -0.12 -1.32 16 8 C 0.56 13.82 7.76 86.88 0.67 14.50 16 9 O -0.57 -18.71 16.10 -3.76 -0.06 -18.77 16 10 N -0.70 -14.39 5.04 -445.12 -2.24 -16.63 16 11 C 0.16 4.02 2.45 44.99 0.11 4.14 16 12 H 0.07 2.14 7.58 -2.39 -0.02 2.12 16 13 C -0.12 -2.81 5.49 30.60 0.17 -2.64 16 14 C -0.11 -2.82 5.92 30.60 0.18 -2.64 16 15 C -0.13 -4.23 5.50 30.59 0.17 -4.06 16 16 C 0.18 6.60 2.77 45.01 0.12 6.72 16 17 H 0.04 1.41 8.08 -2.38 -0.02 1.39 16 18 N -0.73 -35.58 5.12 -322.86 -1.65 -37.23 16 19 C -0.24 -12.99 9.93 84.04 0.83 -12.15 16 20 H 0.07 3.81 7.83 -2.91 -0.02 3.78 16 21 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 22 N -0.97 -57.89 13.06 21.65 0.28 -57.60 16 23 Si 0.97 45.87 29.55 68.60 2.03 47.90 16 24 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 25 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 26 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 27 C -0.11 -3.32 4.86 30.61 0.15 -3.17 16 28 C -0.17 -2.20 9.61 22.63 0.22 -1.98 16 29 C 0.14 1.75 11.17 84.62 0.94 2.70 16 30 N -0.53 -9.46 8.61 -309.14 -2.66 -12.12 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.09 1.32 6.98 -2.39 -0.02 1.30 16 35 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 38 H 0.14 3.46 7.74 -2.91 -0.02 3.44 16 39 H 0.42 5.82 6.74 -92.70 -0.62 5.20 16 40 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.37 19.21 7.80 -92.71 -0.72 18.49 16 47 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 48 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 49 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 50 H 0.17 1.08 6.53 -2.91 -0.02 1.06 16 51 H 0.21 0.86 8.06 -2.92 -0.02 0.84 16 Total: -1.00 -71.72 414.35 0.64 -71.07 By element: Atomic # 1 Polarization: 31.90 SS G_CDS: -0.41 Total: 31.49 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: 6.24 Total: -0.64 kcal Atomic # 7 Polarization: -117.31 SS G_CDS: -6.27 Total: -123.58 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.94 Total: -26.24 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -71.72 0.64 -71.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981453923.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.821 kcal (2) G-P(sol) polarization free energy of solvation -71.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds