Wall clock time and date at job start Wed Apr 1 2020 04:51:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52992 * 109.47415 * 2 1
4 4 O 1.42901 * 109.47130 * 120.00247 * 2 1 3
5 5 C 1.35435 * 116.99755 * 149.99522 * 4 2 1
6 6 N 1.32232 * 119.80302 * 0.02562 * 5 4 2
7 7 C 1.31877 * 121.80197 * 179.97438 * 6 5 4
8 8 C 1.38351 * 121.18770 * 359.97438 * 7 6 5
9 9 C 1.38336 * 119.45520 * 0.02562 * 8 7 6
10 10 C 1.39993 * 118.35008 * 359.72534 * 9 8 7
11 11 C 1.47520 * 120.59503 * 180.28914 * 10 9 8
12 12 O 1.21598 * 119.99709 * 180.24729 * 11 10 9
13 13 N 1.34781 * 120.00537 * 0.23988 * 11 10 9
14 14 C 1.46500 * 120.00015 * 180.02562 * 13 11 10
15 15 H 1.08998 * 109.47296 * 325.00004 * 14 13 11
16 16 C 1.52998 * 109.47196 * 85.00589 * 14 13 11
17 17 C 1.52996 * 109.47103 * 59.99664 * 16 14 13
18 18 C 1.52999 * 109.47489 * 60.00273 * 17 16 14
19 19 C 1.53007 * 109.46762 * 300.00095 * 18 17 16
20 20 H 1.08999 * 109.47144 * 299.99424 * 19 18 17
21 21 N 1.46497 * 109.46927 * 179.97438 * 19 18 17
22 22 C 1.36939 * 120.00326 * 84.99853 * 21 19 18
23 23 H 1.08000 * 119.99705 * 359.97438 * 22 21 19
24 24 C 1.38808 * 120.00185 * 179.97438 * 22 21 19
25 25 N 1.31617 * 119.99965 * 0.02562 * 24 22 21
26 26 Si 1.86807 * 120.00038 * 180.02562 * 24 22 21
27 27 H 1.48492 * 109.46986 * 59.99828 * 26 24 22
28 28 H 1.48494 * 109.46969 * 180.02562 * 26 24 22
29 29 H 1.48502 * 109.46760 * 300.00216 * 26 24 22
30 30 C 1.52996 * 109.47196 * 59.99726 * 19 18 17
31 31 H 1.09004 * 109.46706 * 299.99896 * 1 2 3
32 32 H 1.08994 * 109.47304 * 59.99757 * 1 2 3
33 33 H 1.08997 * 109.47350 * 180.02562 * 1 2 3
34 34 H 1.09004 * 109.46706 * 240.00104 * 2 1 3
35 35 H 1.09004 * 109.47098 * 60.00345 * 3 2 1
36 36 H 1.09002 * 109.47371 * 180.02562 * 3 2 1
37 37 H 1.08994 * 109.47608 * 300.00383 * 3 2 1
38 38 H 1.08000 * 119.40582 * 179.97438 * 7 6 5
39 39 H 1.07996 * 120.27497 * 179.97438 * 8 7 6
40 40 H 1.08007 * 120.82365 * 180.02562 * 9 8 7
41 41 H 0.97002 * 119.99542 * 0.02562 * 13 11 10
42 42 H 1.08994 * 109.47230 * 179.97438 * 16 14 13
43 43 H 1.09002 * 109.47185 * 299.99709 * 16 14 13
44 44 H 1.08998 * 109.47075 * 180.02562 * 17 16 14
45 45 H 1.09008 * 109.47409 * 299.99691 * 17 16 14
46 46 H 1.08999 * 109.47044 * 59.99212 * 18 17 16
47 47 H 1.08993 * 109.47516 * 180.02562 * 18 17 16
48 48 H 0.97001 * 120.00134 * 264.99365 * 21 19 18
49 49 H 0.97006 * 119.99891 * 179.97438 * 25 24 22
50 50 H 1.09001 * 109.47075 * 180.02562 * 30 19 18
51 51 H 1.08999 * 109.47321 * 59.99807 * 30 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 8 2.0064 -0.6737 1.1668
5 6 3.1966 -1.3120 1.0653
6 7 3.8588 -1.2897 -0.0790
7 6 5.0207 -1.8970 -0.2215
8 6 5.6012 -2.5881 0.8271
9 6 4.9519 -2.6440 2.0473
10 6 3.7223 -1.9873 2.1767
11 6 2.9903 -2.0095 3.4573
12 8 1.9209 -1.4392 3.5563
13 7 3.5067 -2.6620 4.5176
14 6 2.7795 -2.6844 5.7891
15 1 2.2632 -1.7347 5.9292
16 6 1.7576 -3.8229 5.7722
17 6 2.4824 -5.1559 5.5756
18 6 3.4696 -5.3739 6.7239
19 6 4.4916 -4.2353 6.7409
20 1 5.0327 -4.2186 5.7948
21 7 5.4365 -4.4437 7.8408
22 6 6.5306 -5.2473 7.6606
23 1 6.6966 -5.7278 6.7077
24 6 7.4262 -5.4444 8.7026
25 7 7.2236 -4.8592 9.8640
26 14 8.9191 -6.5400 8.4565
27 1 9.7587 -5.9938 7.3603
28 1 9.7114 -6.5862 9.7116
29 1 8.4734 -7.9116 8.1023
30 6 3.7668 -2.9024 6.9375
31 1 -0.3633 0.5138 0.8900
32 1 -0.3633 0.5138 -0.8899
33 1 -0.3634 -1.0276 0.0005
34 1 1.8933 -0.5138 -0.8900
35 1 1.6768 1.9562 0.8900
36 1 3.1301 1.4424 -0.0005
37 1 1.6768 1.9563 -0.8899
38 1 5.5282 -1.8543 -1.1739
39 1 6.5531 -3.0805 0.6940
40 1 5.3851 -3.1769 2.8809
41 1 4.3599 -3.1167 4.4387
42 1 1.2168 -3.8399 6.7184
43 1 1.0542 -3.6677 4.9541
44 1 1.7543 -5.9670 5.5630
45 1 3.0234 -5.1393 4.6294
46 1 2.9286 -5.3906 7.6700
47 1 3.9863 -6.3233 6.5836
48 1 5.2873 -4.0125 8.6967
49 1 7.8494 -4.9972 10.5923
50 1 4.4948 -2.0912 6.9491
51 1 3.2257 -2.9191 7.8835
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000981562988.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:51:29
Heat of formation + Delta-G solvation = -39.031740 kcal
Electronic energy + Delta-G solvation = -31279.375507 eV
Core-core repulsion = 27178.836183 eV
Total energy + Delta-G solvation = -4100.539323 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-41.14206 -39.73354 -38.42012 -37.72286 -34.48103 -33.48599 -33.41350 -32.46634
-31.16337 -30.60176 -29.34353 -27.85860 -27.48761 -24.92482 -23.98677 -23.67353
-22.09954 -21.57794 -21.20731 -20.78597 -18.88251 -18.70767 -17.78845 -17.17486
-16.92227 -16.00984 -15.53126 -15.43896 -15.19734 -14.72663 -14.68102 -14.49842
-14.39843 -14.01870 -13.67039 -13.54106 -13.34399 -13.23997 -13.02659 -12.64303
-12.54136 -12.50378 -12.43280 -12.16053 -12.05749 -11.83403 -11.71133 -11.16358
-11.02161 -10.99657 -10.89769 -10.77380 -10.37630 -10.24477 -10.20510 -10.17206
-10.15250 -9.75569 -9.59587 -9.52743 -8.95178 -8.86033 -8.65874 -6.99810
-5.80213 -3.09276 0.48736 1.01526 2.78993 2.89370 3.22256 3.40072
3.44763 3.46123 3.68376 3.98634 4.49646 4.54040 4.59611 4.65252
4.73485 4.75438 4.89975 4.98585 5.05151 5.12566 5.19724 5.25198
5.31808 5.48479 5.50907 5.53903 5.55585 5.59317 5.61772 5.69735
5.76631 5.81173 5.88878 5.91475 5.94958 5.98905 6.07432 6.10752
6.14272 6.27050 6.30565 6.49915 6.57193 6.70485 6.71939 6.92836
7.07248 7.09990 7.49010 7.64261 7.66933 8.35167 8.38161 9.49246
10.07035 10.41447 11.42240
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.014722 B = 0.002611 C = 0.002352
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1901.418812 B =10720.099909 C =11899.728422
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C 0.075 3.925
3 C -0.167 4.167
4 O -0.263 6.263
5 C 0.374 3.626
6 N -0.548 5.548
7 C 0.163 3.837
8 C -0.220 4.220
9 C -0.007 4.007
10 C -0.209 4.209
11 C 0.563 3.437
12 O -0.521 6.521
13 N -0.715 5.715
14 C 0.154 3.846
15 H 0.085 0.915
16 C -0.127 4.127
17 C -0.115 4.115
18 C -0.137 4.137
19 C 0.182 3.818
20 H 0.039 0.961
21 N -0.724 5.724
22 C -0.240 4.240
23 H 0.069 0.931
24 C -0.013 4.013
25 N -0.932 5.932
26 Si 0.905 3.095
27 H -0.286 1.286
28 H -0.291 1.291
29 H -0.286 1.286
30 C -0.134 4.134
31 H 0.067 0.933
32 H 0.074 0.926
33 H 0.062 0.938
34 H 0.087 0.913
35 H 0.063 0.937
36 H 0.059 0.941
37 H 0.069 0.931
38 H 0.163 0.837
39 H 0.145 0.855
40 H 0.147 0.853
41 H 0.399 0.601
42 H 0.070 0.930
43 H 0.061 0.939
44 H 0.052 0.948
45 H 0.054 0.946
46 H 0.056 0.944
47 H 0.060 0.940
48 H 0.384 0.616
49 H 0.256 0.744
50 H 0.069 0.931
51 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.551 7.911 -21.187 24.550
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C 0.019 3.981
3 C -0.225 4.225
4 O -0.168 6.168
5 C 0.194 3.806
6 N -0.272 5.272
7 C 0.007 3.993
8 C -0.241 4.241
9 C -0.033 4.033
10 C -0.215 4.215
11 C 0.349 3.651
12 O -0.398 6.398
13 N -0.369 5.369
14 C 0.049 3.951
15 H 0.103 0.897
16 C -0.166 4.166
17 C -0.153 4.153
18 C -0.177 4.177
19 C 0.071 3.929
20 H 0.057 0.943
21 N -0.365 5.365
22 C -0.371 4.371
23 H 0.087 0.913
24 C -0.209 4.209
25 N -0.580 5.580
26 Si 0.736 3.264
27 H -0.213 1.213
28 H -0.217 1.217
29 H -0.213 1.213
30 C -0.173 4.173
31 H 0.086 0.914
32 H 0.093 0.907
33 H 0.082 0.918
34 H 0.105 0.895
35 H 0.082 0.918
36 H 0.078 0.922
37 H 0.088 0.912
38 H 0.180 0.820
39 H 0.162 0.838
40 H 0.164 0.836
41 H 0.236 0.764
42 H 0.089 0.911
43 H 0.080 0.920
44 H 0.071 0.929
45 H 0.073 0.927
46 H 0.075 0.925
47 H 0.079 0.921
48 H 0.218 0.782
49 H 0.066 0.934
50 H 0.088 0.912
51 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges -10.760 8.722 -21.592 25.653
hybrid contribution 1.796 -1.241 0.666 2.283
sum -8.964 7.481 -20.926 23.963
Atomic orbital electron populations
1.21873 0.92732 1.03083 1.02908 1.22425 0.94826 0.92844 0.88007
1.22206 1.01927 0.95692 1.02649 1.86601 1.30193 1.62605 1.37382
1.19813 0.85623 0.87064 0.88138 1.67406 1.11012 1.24716 1.24072
1.22643 0.88945 0.88944 0.98809 1.21951 1.03159 1.04964 0.93982
1.21756 0.91181 0.92269 0.98075 1.20105 0.98677 1.07739 0.95029
1.17752 0.85239 0.79106 0.83052 1.90811 1.21215 1.44185 1.83580
1.46087 1.24851 1.54631 1.11309 1.20945 0.92756 0.99156 0.82210
0.89700 1.21895 0.97641 0.95010 1.02037 1.21501 0.98299 0.96256
0.99266 1.22288 0.97187 1.01081 0.97163 1.20132 0.89530 0.90859
0.92330 0.94286 1.42418 1.25260 1.57474 1.11331 1.19157 0.99730
1.20984 0.97228 0.91322 1.24739 0.99313 1.00837 0.95990 1.69648
1.38270 1.47398 1.02681 0.86299 0.82883 0.80459 0.76717 1.21296
1.21714 1.21302 1.22137 0.98187 0.99599 0.97349 0.91360 0.90682
0.91840 0.89456 0.91783 0.92154 0.91177 0.81963 0.83769 0.83581
0.76400 0.91141 0.92032 0.92879 0.92731 0.92514 0.92109 0.78225
0.93440 0.91220 0.90451
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.30 9.56 37.16 0.36 -0.94 16
2 C 0.08 0.79 3.11 -26.73 -0.08 0.71 16
3 C -0.17 -1.54 9.53 37.15 0.35 -1.18 16
4 O -0.26 -3.69 7.86 -39.77 -0.31 -4.00 16
5 C 0.37 4.97 7.47 -16.61 -0.12 4.84 16
6 N -0.55 -6.17 8.64 -12.98 -0.11 -6.28 16
7 C 0.16 1.39 11.17 -17.49 -0.20 1.20 16
8 C -0.22 -1.82 10.09 -39.50 -0.40 -2.22 16
9 C -0.01 -0.07 9.64 -38.89 -0.37 -0.44 16
10 C -0.21 -2.72 5.90 -104.69 -0.62 -3.34 16
11 C 0.56 8.38 7.74 -12.47 -0.10 8.28 16
12 O -0.52 -9.31 14.85 -16.49 -0.24 -9.56 16
13 N -0.72 -9.67 4.19 -54.85 -0.23 -9.90 16
14 C 0.15 2.18 2.78 -67.93 -0.19 1.99 16
15 H 0.08 1.26 7.58 -51.93 -0.39 0.86 16
16 C -0.13 -1.74 5.60 -26.73 -0.15 -1.89 16
17 C -0.11 -1.61 5.76 -26.73 -0.15 -1.77 16
18 C -0.14 -2.32 5.50 -26.73 -0.15 -2.47 16
19 C 0.18 3.30 2.60 -67.93 -0.18 3.12 16
20 H 0.04 0.70 6.44 -51.93 -0.33 0.36 16
21 N -0.72 -17.17 5.12 -53.43 -0.27 -17.45 16
22 C -0.24 -6.35 9.93 -15.06 -0.15 -6.50 16
23 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16
24 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16
25 N -0.93 -27.49 13.06 55.49 0.72 -26.77 16
26 Si 0.91 21.77 29.55 -169.99 -5.02 16.74 16
27 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16
28 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16
29 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16
30 C -0.13 -2.09 5.07 -26.73 -0.14 -2.23 16
31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16
33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
34 H 0.09 0.89 6.98 -51.93 -0.36 0.53 16
35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16
37 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16
38 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16
39 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16
40 H 0.15 1.26 6.52 -52.48 -0.34 0.92 16
41 H 0.40 4.97 4.97 -40.82 -0.20 4.77 16
42 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16
43 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16
44 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16
45 H 0.05 0.75 7.60 -51.92 -0.39 0.35 16
46 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16
47 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16
48 H 0.38 9.82 7.80 -40.82 -0.32 9.50 16
49 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16
50 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16
51 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16
LS Contribution 407.54 15.07 6.14 6.14
Total: -1.00 -32.54 407.54 -9.95 -42.49
By element:
Atomic # 1 Polarization: 20.10 SS G_CDS: -8.24 Total: 11.86 kcal
Atomic # 6 Polarization: -0.91 SS G_CDS: -2.38 Total: -3.29 kcal
Atomic # 7 Polarization: -60.50 SS G_CDS: 0.11 Total: -60.39 kcal
Atomic # 8 Polarization: -13.00 SS G_CDS: -0.56 Total: -13.56 kcal
Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal
Total LS contribution 6.14 Total: 6.14 kcal
Total: -32.54 -9.95 -42.49 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000981562988.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 3.457 kcal
(2) G-P(sol) polarization free energy of solvation -32.543 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.086 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.945 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.488 kcal
(6) G-S(sol) free energy of system = (1) + (5) -39.032 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds