Wall clock time and date at job start Wed Apr 1 2020 04:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47415 * 2 1 4 4 O 1.42901 * 109.47130 * 120.00247 * 2 1 3 5 5 C 1.35435 * 116.99755 * 149.99522 * 4 2 1 6 6 N 1.32232 * 119.80302 * 0.02562 * 5 4 2 7 7 C 1.31877 * 121.80197 * 179.97438 * 6 5 4 8 8 C 1.38351 * 121.18770 * 359.97438 * 7 6 5 9 9 C 1.38336 * 119.45520 * 0.02562 * 8 7 6 10 10 C 1.39993 * 118.35008 * 359.72534 * 9 8 7 11 11 C 1.47520 * 120.59503 * 180.28914 * 10 9 8 12 12 O 1.21598 * 119.99709 * 180.24729 * 11 10 9 13 13 N 1.34781 * 120.00537 * 0.23988 * 11 10 9 14 14 C 1.46500 * 120.00015 * 180.02562 * 13 11 10 15 15 H 1.08998 * 109.47296 * 325.00004 * 14 13 11 16 16 C 1.52998 * 109.47196 * 85.00589 * 14 13 11 17 17 C 1.52996 * 109.47103 * 59.99664 * 16 14 13 18 18 C 1.52999 * 109.47489 * 60.00273 * 17 16 14 19 19 C 1.53007 * 109.46762 * 300.00095 * 18 17 16 20 20 H 1.08999 * 109.47144 * 299.99424 * 19 18 17 21 21 N 1.46497 * 109.46927 * 179.97438 * 19 18 17 22 22 C 1.36939 * 120.00326 * 84.99853 * 21 19 18 23 23 H 1.08000 * 119.99705 * 359.97438 * 22 21 19 24 24 C 1.38808 * 120.00185 * 179.97438 * 22 21 19 25 25 N 1.31617 * 119.99965 * 0.02562 * 24 22 21 26 26 Si 1.86807 * 120.00038 * 180.02562 * 24 22 21 27 27 H 1.48492 * 109.46986 * 59.99828 * 26 24 22 28 28 H 1.48494 * 109.46969 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.46760 * 300.00216 * 26 24 22 30 30 C 1.52996 * 109.47196 * 59.99726 * 19 18 17 31 31 H 1.09004 * 109.46706 * 299.99896 * 1 2 3 32 32 H 1.08994 * 109.47304 * 59.99757 * 1 2 3 33 33 H 1.08997 * 109.47350 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.46706 * 240.00104 * 2 1 3 35 35 H 1.09004 * 109.47098 * 60.00345 * 3 2 1 36 36 H 1.09002 * 109.47371 * 180.02562 * 3 2 1 37 37 H 1.08994 * 109.47608 * 300.00383 * 3 2 1 38 38 H 1.08000 * 119.40582 * 179.97438 * 7 6 5 39 39 H 1.07996 * 120.27497 * 179.97438 * 8 7 6 40 40 H 1.08007 * 120.82365 * 180.02562 * 9 8 7 41 41 H 0.97002 * 119.99542 * 0.02562 * 13 11 10 42 42 H 1.08994 * 109.47230 * 179.97438 * 16 14 13 43 43 H 1.09002 * 109.47185 * 299.99709 * 16 14 13 44 44 H 1.08998 * 109.47075 * 180.02562 * 17 16 14 45 45 H 1.09008 * 109.47409 * 299.99691 * 17 16 14 46 46 H 1.08999 * 109.47044 * 59.99212 * 18 17 16 47 47 H 1.08993 * 109.47516 * 180.02562 * 18 17 16 48 48 H 0.97001 * 120.00134 * 264.99365 * 21 19 18 49 49 H 0.97006 * 119.99891 * 179.97438 * 25 24 22 50 50 H 1.09001 * 109.47075 * 180.02562 * 30 19 18 51 51 H 1.08999 * 109.47321 * 59.99807 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 3.1966 -1.3120 1.0653 6 7 3.8588 -1.2897 -0.0790 7 6 5.0207 -1.8970 -0.2215 8 6 5.6012 -2.5881 0.8271 9 6 4.9519 -2.6440 2.0473 10 6 3.7223 -1.9873 2.1767 11 6 2.9903 -2.0095 3.4573 12 8 1.9209 -1.4392 3.5563 13 7 3.5067 -2.6620 4.5176 14 6 2.7795 -2.6844 5.7891 15 1 2.2632 -1.7347 5.9292 16 6 1.7576 -3.8229 5.7722 17 6 2.4824 -5.1559 5.5756 18 6 3.4696 -5.3739 6.7239 19 6 4.4916 -4.2353 6.7409 20 1 5.0327 -4.2186 5.7948 21 7 5.4365 -4.4437 7.8408 22 6 6.5306 -5.2473 7.6606 23 1 6.6966 -5.7278 6.7077 24 6 7.4262 -5.4444 8.7026 25 7 7.2236 -4.8592 9.8640 26 14 8.9191 -6.5400 8.4565 27 1 9.7587 -5.9938 7.3603 28 1 9.7114 -6.5862 9.7116 29 1 8.4734 -7.9116 8.1023 30 6 3.7668 -2.9024 6.9375 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.6768 1.9562 0.8900 36 1 3.1301 1.4424 -0.0005 37 1 1.6768 1.9563 -0.8899 38 1 5.5282 -1.8543 -1.1739 39 1 6.5531 -3.0805 0.6940 40 1 5.3851 -3.1769 2.8809 41 1 4.3599 -3.1167 4.4387 42 1 1.2168 -3.8399 6.7184 43 1 1.0542 -3.6677 4.9541 44 1 1.7543 -5.9670 5.5630 45 1 3.0234 -5.1393 4.6294 46 1 2.9286 -5.3906 7.6700 47 1 3.9863 -6.3233 6.5836 48 1 5.2873 -4.0125 8.6967 49 1 7.8494 -4.9972 10.5923 50 1 4.4948 -2.0912 6.9491 51 1 3.2257 -2.9191 7.8835 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981562988.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:29 Heat of formation + Delta-G solvation = -39.031740 kcal Electronic energy + Delta-G solvation = -31279.375507 eV Core-core repulsion = 27178.836183 eV Total energy + Delta-G solvation = -4100.539323 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.14206 -39.73354 -38.42012 -37.72286 -34.48103 -33.48599 -33.41350 -32.46634 -31.16337 -30.60176 -29.34353 -27.85860 -27.48761 -24.92482 -23.98677 -23.67353 -22.09954 -21.57794 -21.20731 -20.78597 -18.88251 -18.70767 -17.78845 -17.17486 -16.92227 -16.00984 -15.53126 -15.43896 -15.19734 -14.72663 -14.68102 -14.49842 -14.39843 -14.01870 -13.67039 -13.54106 -13.34399 -13.23997 -13.02659 -12.64303 -12.54136 -12.50378 -12.43280 -12.16053 -12.05749 -11.83403 -11.71133 -11.16358 -11.02161 -10.99657 -10.89769 -10.77380 -10.37630 -10.24477 -10.20510 -10.17206 -10.15250 -9.75569 -9.59587 -9.52743 -8.95178 -8.86033 -8.65874 -6.99810 -5.80213 -3.09276 0.48736 1.01526 2.78993 2.89370 3.22256 3.40072 3.44763 3.46123 3.68376 3.98634 4.49646 4.54040 4.59611 4.65252 4.73485 4.75438 4.89975 4.98585 5.05151 5.12566 5.19724 5.25198 5.31808 5.48479 5.50907 5.53903 5.55585 5.59317 5.61772 5.69735 5.76631 5.81173 5.88878 5.91475 5.94958 5.98905 6.07432 6.10752 6.14272 6.27050 6.30565 6.49915 6.57193 6.70485 6.71939 6.92836 7.07248 7.09990 7.49010 7.64261 7.66933 8.35167 8.38161 9.49246 10.07035 10.41447 11.42240 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014722 B = 0.002611 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.418812 B =10720.099909 C =11899.728422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.075 3.925 3 C -0.167 4.167 4 O -0.263 6.263 5 C 0.374 3.626 6 N -0.548 5.548 7 C 0.163 3.837 8 C -0.220 4.220 9 C -0.007 4.007 10 C -0.209 4.209 11 C 0.563 3.437 12 O -0.521 6.521 13 N -0.715 5.715 14 C 0.154 3.846 15 H 0.085 0.915 16 C -0.127 4.127 17 C -0.115 4.115 18 C -0.137 4.137 19 C 0.182 3.818 20 H 0.039 0.961 21 N -0.724 5.724 22 C -0.240 4.240 23 H 0.069 0.931 24 C -0.013 4.013 25 N -0.932 5.932 26 Si 0.905 3.095 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 C -0.134 4.134 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.163 0.837 39 H 0.145 0.855 40 H 0.147 0.853 41 H 0.399 0.601 42 H 0.070 0.930 43 H 0.061 0.939 44 H 0.052 0.948 45 H 0.054 0.946 46 H 0.056 0.944 47 H 0.060 0.940 48 H 0.384 0.616 49 H 0.256 0.744 50 H 0.069 0.931 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.551 7.911 -21.187 24.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.019 3.981 3 C -0.225 4.225 4 O -0.168 6.168 5 C 0.194 3.806 6 N -0.272 5.272 7 C 0.007 3.993 8 C -0.241 4.241 9 C -0.033 4.033 10 C -0.215 4.215 11 C 0.349 3.651 12 O -0.398 6.398 13 N -0.369 5.369 14 C 0.049 3.951 15 H 0.103 0.897 16 C -0.166 4.166 17 C -0.153 4.153 18 C -0.177 4.177 19 C 0.071 3.929 20 H 0.057 0.943 21 N -0.365 5.365 22 C -0.371 4.371 23 H 0.087 0.913 24 C -0.209 4.209 25 N -0.580 5.580 26 Si 0.736 3.264 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 C -0.173 4.173 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.180 0.820 39 H 0.162 0.838 40 H 0.164 0.836 41 H 0.236 0.764 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.079 0.921 48 H 0.218 0.782 49 H 0.066 0.934 50 H 0.088 0.912 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.760 8.722 -21.592 25.653 hybrid contribution 1.796 -1.241 0.666 2.283 sum -8.964 7.481 -20.926 23.963 Atomic orbital electron populations 1.21873 0.92732 1.03083 1.02908 1.22425 0.94826 0.92844 0.88007 1.22206 1.01927 0.95692 1.02649 1.86601 1.30193 1.62605 1.37382 1.19813 0.85623 0.87064 0.88138 1.67406 1.11012 1.24716 1.24072 1.22643 0.88945 0.88944 0.98809 1.21951 1.03159 1.04964 0.93982 1.21756 0.91181 0.92269 0.98075 1.20105 0.98677 1.07739 0.95029 1.17752 0.85239 0.79106 0.83052 1.90811 1.21215 1.44185 1.83580 1.46087 1.24851 1.54631 1.11309 1.20945 0.92756 0.99156 0.82210 0.89700 1.21895 0.97641 0.95010 1.02037 1.21501 0.98299 0.96256 0.99266 1.22288 0.97187 1.01081 0.97163 1.20132 0.89530 0.90859 0.92330 0.94286 1.42418 1.25260 1.57474 1.11331 1.19157 0.99730 1.20984 0.97228 0.91322 1.24739 0.99313 1.00837 0.95990 1.69648 1.38270 1.47398 1.02681 0.86299 0.82883 0.80459 0.76717 1.21296 1.21714 1.21302 1.22137 0.98187 0.99599 0.97349 0.91360 0.90682 0.91840 0.89456 0.91783 0.92154 0.91177 0.81963 0.83769 0.83581 0.76400 0.91141 0.92032 0.92879 0.92731 0.92514 0.92109 0.78225 0.93440 0.91220 0.90451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.56 37.16 0.36 -0.94 16 2 C 0.08 0.79 3.11 -26.73 -0.08 0.71 16 3 C -0.17 -1.54 9.53 37.15 0.35 -1.18 16 4 O -0.26 -3.69 7.86 -39.77 -0.31 -4.00 16 5 C 0.37 4.97 7.47 -16.61 -0.12 4.84 16 6 N -0.55 -6.17 8.64 -12.98 -0.11 -6.28 16 7 C 0.16 1.39 11.17 -17.49 -0.20 1.20 16 8 C -0.22 -1.82 10.09 -39.50 -0.40 -2.22 16 9 C -0.01 -0.07 9.64 -38.89 -0.37 -0.44 16 10 C -0.21 -2.72 5.90 -104.69 -0.62 -3.34 16 11 C 0.56 8.38 7.74 -12.47 -0.10 8.28 16 12 O -0.52 -9.31 14.85 -16.49 -0.24 -9.56 16 13 N -0.72 -9.67 4.19 -54.85 -0.23 -9.90 16 14 C 0.15 2.18 2.78 -67.93 -0.19 1.99 16 15 H 0.08 1.26 7.58 -51.93 -0.39 0.86 16 16 C -0.13 -1.74 5.60 -26.73 -0.15 -1.89 16 17 C -0.11 -1.61 5.76 -26.73 -0.15 -1.77 16 18 C -0.14 -2.32 5.50 -26.73 -0.15 -2.47 16 19 C 0.18 3.30 2.60 -67.93 -0.18 3.12 16 20 H 0.04 0.70 6.44 -51.93 -0.33 0.36 16 21 N -0.72 -17.17 5.12 -53.43 -0.27 -17.45 16 22 C -0.24 -6.35 9.93 -15.06 -0.15 -6.50 16 23 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 24 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 25 N -0.93 -27.49 13.06 55.49 0.72 -26.77 16 26 Si 0.91 21.77 29.55 -169.99 -5.02 16.74 16 27 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 29 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 30 C -0.13 -2.09 5.07 -26.73 -0.14 -2.23 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.89 6.98 -51.93 -0.36 0.53 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.15 1.26 6.52 -52.48 -0.34 0.92 16 41 H 0.40 4.97 4.97 -40.82 -0.20 4.77 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.05 0.75 7.60 -51.92 -0.39 0.35 16 46 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 48 H 0.38 9.82 7.80 -40.82 -0.32 9.50 16 49 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 50 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 51 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 407.54 15.07 6.14 6.14 Total: -1.00 -32.54 407.54 -9.95 -42.49 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: -8.24 Total: 11.86 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -2.38 Total: -3.29 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: 0.11 Total: -60.39 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -0.56 Total: -13.56 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.54 -9.95 -42.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981562988.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.457 kcal (2) G-P(sol) polarization free energy of solvation -32.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds