Wall clock time and date at job start Wed Apr 1 2020 04:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47415 * 2 1 4 4 O 1.42901 * 109.47130 * 120.00247 * 2 1 3 5 5 C 1.35435 * 116.99755 * 149.99522 * 4 2 1 6 6 N 1.32232 * 119.80302 * 0.02562 * 5 4 2 7 7 C 1.31877 * 121.80197 * 179.97438 * 6 5 4 8 8 C 1.38351 * 121.18770 * 359.97438 * 7 6 5 9 9 C 1.38336 * 119.45520 * 0.02562 * 8 7 6 10 10 C 1.39993 * 118.35008 * 359.72534 * 9 8 7 11 11 C 1.47520 * 120.59503 * 180.28914 * 10 9 8 12 12 O 1.21598 * 119.99709 * 180.24729 * 11 10 9 13 13 N 1.34781 * 120.00537 * 0.23988 * 11 10 9 14 14 C 1.46500 * 120.00015 * 180.02562 * 13 11 10 15 15 H 1.08998 * 109.47296 * 325.00004 * 14 13 11 16 16 C 1.52998 * 109.47196 * 85.00589 * 14 13 11 17 17 C 1.52996 * 109.47103 * 59.99664 * 16 14 13 18 18 C 1.52999 * 109.47489 * 60.00273 * 17 16 14 19 19 C 1.53007 * 109.46762 * 300.00095 * 18 17 16 20 20 H 1.08999 * 109.47144 * 299.99424 * 19 18 17 21 21 N 1.46497 * 109.46927 * 179.97438 * 19 18 17 22 22 C 1.36939 * 120.00326 * 84.99853 * 21 19 18 23 23 H 1.08000 * 119.99705 * 359.97438 * 22 21 19 24 24 C 1.38808 * 120.00185 * 179.97438 * 22 21 19 25 25 N 1.31617 * 119.99965 * 0.02562 * 24 22 21 26 26 Si 1.86807 * 120.00038 * 180.02562 * 24 22 21 27 27 H 1.48492 * 109.46986 * 59.99828 * 26 24 22 28 28 H 1.48494 * 109.46969 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.46760 * 300.00216 * 26 24 22 30 30 C 1.52996 * 109.47196 * 59.99726 * 19 18 17 31 31 H 1.09004 * 109.46706 * 299.99896 * 1 2 3 32 32 H 1.08994 * 109.47304 * 59.99757 * 1 2 3 33 33 H 1.08997 * 109.47350 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.46706 * 240.00104 * 2 1 3 35 35 H 1.09004 * 109.47098 * 60.00345 * 3 2 1 36 36 H 1.09002 * 109.47371 * 180.02562 * 3 2 1 37 37 H 1.08994 * 109.47608 * 300.00383 * 3 2 1 38 38 H 1.08000 * 119.40582 * 179.97438 * 7 6 5 39 39 H 1.07996 * 120.27497 * 179.97438 * 8 7 6 40 40 H 1.08007 * 120.82365 * 180.02562 * 9 8 7 41 41 H 0.97002 * 119.99542 * 0.02562 * 13 11 10 42 42 H 1.08994 * 109.47230 * 179.97438 * 16 14 13 43 43 H 1.09002 * 109.47185 * 299.99709 * 16 14 13 44 44 H 1.08998 * 109.47075 * 180.02562 * 17 16 14 45 45 H 1.09008 * 109.47409 * 299.99691 * 17 16 14 46 46 H 1.08999 * 109.47044 * 59.99212 * 18 17 16 47 47 H 1.08993 * 109.47516 * 180.02562 * 18 17 16 48 48 H 0.97001 * 120.00134 * 264.99365 * 21 19 18 49 49 H 0.97006 * 119.99891 * 179.97438 * 25 24 22 50 50 H 1.09001 * 109.47075 * 180.02562 * 30 19 18 51 51 H 1.08999 * 109.47321 * 59.99807 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 3.1966 -1.3120 1.0653 6 7 3.8588 -1.2897 -0.0790 7 6 5.0207 -1.8970 -0.2215 8 6 5.6012 -2.5881 0.8271 9 6 4.9519 -2.6440 2.0473 10 6 3.7223 -1.9873 2.1767 11 6 2.9903 -2.0095 3.4573 12 8 1.9209 -1.4392 3.5563 13 7 3.5067 -2.6620 4.5176 14 6 2.7795 -2.6844 5.7891 15 1 2.2632 -1.7347 5.9292 16 6 1.7576 -3.8229 5.7722 17 6 2.4824 -5.1559 5.5756 18 6 3.4696 -5.3739 6.7239 19 6 4.4916 -4.2353 6.7409 20 1 5.0327 -4.2186 5.7948 21 7 5.4365 -4.4437 7.8408 22 6 6.5306 -5.2473 7.6606 23 1 6.6966 -5.7278 6.7077 24 6 7.4262 -5.4444 8.7026 25 7 7.2236 -4.8592 9.8640 26 14 8.9191 -6.5400 8.4565 27 1 9.7587 -5.9938 7.3603 28 1 9.7114 -6.5862 9.7116 29 1 8.4734 -7.9116 8.1023 30 6 3.7668 -2.9024 6.9375 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.6768 1.9562 0.8900 36 1 3.1301 1.4424 -0.0005 37 1 1.6768 1.9563 -0.8899 38 1 5.5282 -1.8543 -1.1739 39 1 6.5531 -3.0805 0.6940 40 1 5.3851 -3.1769 2.8809 41 1 4.3599 -3.1167 4.4387 42 1 1.2168 -3.8399 6.7184 43 1 1.0542 -3.6677 4.9541 44 1 1.7543 -5.9670 5.5630 45 1 3.0234 -5.1393 4.6294 46 1 2.9286 -5.3906 7.6700 47 1 3.9863 -6.3233 6.5836 48 1 5.2873 -4.0125 8.6967 49 1 7.8494 -4.9972 10.5923 50 1 4.4948 -2.0912 6.9491 51 1 3.2257 -2.9191 7.8835 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981562988.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:28 Heat of formation + Delta-G solvation = -59.133514 kcal Electronic energy + Delta-G solvation = -31280.247185 eV Core-core repulsion = 27178.836183 eV Total energy + Delta-G solvation = -4101.411002 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.03142 -40.87334 -39.28258 -38.97403 -36.12020 -34.67502 -34.22814 -33.55650 -32.84602 -31.47897 -30.56441 -29.45672 -28.19611 -25.84502 -25.58961 -24.76364 -23.33453 -22.61661 -22.38598 -21.87281 -20.10703 -19.69619 -19.13649 -18.59869 -17.86264 -17.01668 -16.81736 -16.50298 -16.22222 -16.09712 -15.75532 -15.68464 -15.38623 -15.17526 -15.03646 -14.85453 -14.65271 -14.22841 -14.03213 -13.84660 -13.50283 -13.40379 -13.28336 -13.20098 -13.07824 -13.01840 -12.87523 -12.86710 -12.74190 -12.24488 -12.07046 -11.93437 -11.92161 -11.76551 -11.58344 -11.44766 -11.14617 -11.03023 -10.98443 -10.80978 -10.55256 -10.03908 -9.50991 -8.96278 -7.89766 -5.17748 -0.33461 0.24057 1.50091 1.52338 1.58175 1.89607 1.99689 2.14812 2.59261 2.81540 3.24404 3.43591 3.61895 3.75808 3.77754 3.88482 3.92150 3.94294 3.99280 4.01912 4.18219 4.24369 4.30701 4.32188 4.36658 4.49345 4.57068 4.66771 4.68360 4.73173 4.79776 4.81663 4.82315 4.86301 4.89348 4.96705 5.09473 5.11551 5.18964 5.19335 5.23110 5.23338 5.38175 5.44925 5.51037 5.52319 5.57355 5.67768 6.28339 6.31938 6.52391 6.76040 7.24192 7.38351 8.14976 8.37353 9.33602 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014722 B = 0.002611 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.418812 B =10720.099909 C =11899.728422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.068 3.932 3 C -0.160 4.160 4 O -0.292 6.292 5 C 0.355 3.645 6 N -0.557 5.557 7 C 0.166 3.834 8 C -0.210 4.210 9 C -0.009 4.009 10 C -0.237 4.237 11 C 0.562 3.438 12 O -0.559 6.559 13 N -0.708 5.708 14 C 0.161 3.839 15 H 0.079 0.921 16 C -0.121 4.121 17 C -0.104 4.104 18 C -0.127 4.127 19 C 0.179 3.821 20 H 0.048 0.952 21 N -0.737 5.737 22 C -0.232 4.232 23 H 0.079 0.921 24 C -0.078 4.078 25 N -0.971 5.971 26 Si 0.968 3.032 27 H -0.275 1.275 28 H -0.301 1.301 29 H -0.280 1.280 30 C -0.121 4.121 31 H 0.056 0.944 32 H 0.103 0.897 33 H 0.055 0.945 34 H 0.089 0.911 35 H 0.053 0.947 36 H 0.048 0.952 37 H 0.095 0.905 38 H 0.202 0.798 39 H 0.179 0.821 40 H 0.159 0.841 41 H 0.405 0.595 42 H 0.079 0.921 43 H 0.058 0.942 44 H 0.067 0.933 45 H 0.060 0.940 46 H 0.048 0.952 47 H 0.043 0.957 48 H 0.371 0.629 49 H 0.249 0.751 50 H 0.062 0.938 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.830 7.313 -23.930 26.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.012 3.988 3 C -0.218 4.218 4 O -0.197 6.197 5 C 0.175 3.825 6 N -0.281 5.281 7 C 0.010 3.990 8 C -0.229 4.229 9 C -0.034 4.034 10 C -0.243 4.243 11 C 0.350 3.650 12 O -0.438 6.438 13 N -0.362 5.362 14 C 0.056 3.944 15 H 0.097 0.903 16 C -0.160 4.160 17 C -0.142 4.142 18 C -0.167 4.167 19 C 0.070 3.930 20 H 0.066 0.934 21 N -0.376 5.376 22 C -0.364 4.364 23 H 0.097 0.903 24 C -0.270 4.270 25 N -0.622 5.622 26 Si 0.798 3.202 27 H -0.201 1.201 28 H -0.228 1.228 29 H -0.206 1.206 30 C -0.160 4.160 31 H 0.075 0.925 32 H 0.121 0.879 33 H 0.074 0.926 34 H 0.107 0.893 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.114 0.886 38 H 0.219 0.781 39 H 0.196 0.804 40 H 0.176 0.824 41 H 0.243 0.757 42 H 0.097 0.903 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.079 0.921 46 H 0.066 0.934 47 H 0.062 0.938 48 H 0.203 0.797 49 H 0.057 0.943 50 H 0.081 0.919 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.050 8.110 -24.390 27.598 hybrid contribution 1.571 -1.037 1.397 2.344 sum -8.479 7.073 -22.993 25.507 Atomic orbital electron populations 1.21888 0.91706 1.02853 1.03720 1.22658 0.95681 0.93178 0.87243 1.22160 1.01113 0.95153 1.03356 1.86566 1.30921 1.63156 1.39087 1.20011 0.85873 0.87666 0.88939 1.67479 1.12050 1.25356 1.23219 1.23403 0.87895 0.87259 1.00461 1.22349 1.03893 1.03909 0.92776 1.21989 0.90209 0.91769 0.99482 1.20067 1.00105 1.09993 0.94163 1.18079 0.84854 0.78272 0.83783 1.90781 1.22933 1.45837 1.84294 1.45991 1.24926 1.54415 1.10831 1.20809 0.92396 0.99238 0.81938 0.90258 1.21841 0.97318 0.94381 1.02423 1.21401 0.97858 0.96880 0.98067 1.22110 0.97151 0.99412 0.98062 1.20350 0.89196 0.92493 0.90916 0.93437 1.42637 1.25791 1.57039 1.12141 1.19573 0.99814 1.19853 0.97199 0.90315 1.25517 1.02444 1.03008 0.96040 1.69812 1.39316 1.49607 1.03475 0.85288 0.79706 0.78979 0.76271 1.20125 1.22797 1.20614 1.21974 0.98055 0.97845 0.98111 0.92468 0.87853 0.92577 0.89252 0.92821 0.93279 0.88633 0.78107 0.80405 0.82351 0.75692 0.90279 0.92288 0.91437 0.92095 0.93361 0.93784 0.79695 0.94271 0.91942 0.90379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.56 71.98 0.69 -1.79 16 2 C 0.07 1.42 3.11 30.59 0.10 1.51 16 3 C -0.16 -2.88 9.53 71.98 0.69 -2.19 16 4 O -0.29 -8.39 7.86 -66.49 -0.52 -8.91 16 5 C 0.35 9.37 7.47 85.13 0.64 10.00 16 6 N -0.56 -11.73 8.64 -308.00 -2.66 -14.39 16 7 C 0.17 2.33 11.17 84.71 0.95 3.27 16 8 C -0.21 -2.75 10.09 22.32 0.23 -2.53 16 9 C -0.01 -0.16 9.64 22.72 0.22 0.06 16 10 C -0.24 -6.07 5.90 -19.91 -0.12 -6.19 16 11 C 0.56 16.83 7.74 86.69 0.67 17.50 16 12 O -0.56 -20.53 14.85 16.79 0.25 -20.28 16 13 N -0.71 -18.72 4.19 -445.70 -1.87 -20.58 16 14 C 0.16 4.47 2.78 44.99 0.13 4.60 16 15 H 0.08 2.35 7.58 -2.39 -0.02 2.33 16 16 C -0.12 -3.17 5.60 30.59 0.17 -2.99 16 17 C -0.10 -2.73 5.76 30.59 0.18 -2.56 16 18 C -0.13 -4.19 5.50 30.60 0.17 -4.02 16 19 C 0.18 6.36 2.60 44.99 0.12 6.48 16 20 H 0.05 1.62 6.44 -2.39 -0.02 1.61 16 21 N -0.74 -34.94 5.12 -322.94 -1.65 -36.59 16 22 C -0.23 -12.19 9.93 84.03 0.83 -11.35 16 23 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 24 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 25 N -0.97 -58.27 13.06 21.65 0.28 -57.99 16 26 Si 0.97 44.65 29.55 68.60 2.03 46.68 16 27 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 28 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 29 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 30 C -0.12 -3.74 5.07 30.59 0.16 -3.58 16 31 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.09 1.77 6.98 -2.39 -0.02 1.75 16 35 H 0.05 1.05 8.14 -2.39 -0.02 1.04 16 36 H 0.05 0.97 8.14 -2.39 -0.02 0.96 16 37 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.20 1.13 8.06 -2.91 -0.02 1.11 16 39 H 0.18 1.14 8.06 -2.91 -0.02 1.11 16 40 H 0.16 2.38 6.52 -2.91 -0.02 2.36 16 41 H 0.41 9.59 4.97 -92.71 -0.46 9.13 16 42 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.06 1.54 7.60 -2.38 -0.02 1.53 16 46 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 47 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 48 H 0.37 19.30 7.80 -92.71 -0.72 18.58 16 49 H 0.25 14.63 8.31 -92.70 -0.77 13.86 16 50 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 51 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -71.96 407.54 1.88 -70.09 By element: Atomic # 1 Polarization: 39.87 SS G_CDS: -0.24 Total: 39.63 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: 6.26 Total: 2.34 kcal Atomic # 7 Polarization: -123.66 SS G_CDS: -5.90 Total: -129.56 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -0.27 Total: -29.19 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -71.96 1.88 -70.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981562988.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.953 kcal (2) G-P(sol) polarization free energy of solvation -71.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds