Wall clock time and date at job start Wed Apr 1 2020 04:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47160 * 2 1 4 4 O 1.42900 * 109.46852 * 119.99536 * 2 1 3 5 5 C 1.35923 * 116.99681 * 84.77475 * 4 2 1 6 6 C 1.38854 * 120.40713 * 174.59700 * 5 4 2 7 7 N 1.31885 * 121.00216 * 180.02562 * 6 5 4 8 8 C 1.31680 * 121.93734 * 359.70080 * 7 6 5 9 9 C 1.39522 * 120.69531 * 0.59052 * 8 7 6 10 10 C 1.47846 * 120.53297 * 179.69959 * 9 8 7 11 11 O 1.21552 * 120.00326 * 32.83055 * 10 9 8 12 12 N 1.34779 * 120.00462 * 212.55306 * 10 9 8 13 13 C 1.46933 * 120.62448 * 5.33389 * 12 10 9 14 14 C 1.53621 * 108.54297 * 126.36794 * 13 12 10 15 15 C 1.53039 * 109.24293 * 54.85385 * 14 13 12 16 16 N 1.46500 * 109.45957 * 178.48993 * 15 14 13 17 17 C 1.46501 * 120.00105 * 60.06836 * 16 15 14 18 18 C 1.36943 * 120.00195 * 240.06777 * 16 15 14 19 19 H 1.08005 * 119.99536 * 21.48741 * 18 16 15 20 20 C 1.38804 * 119.99984 * 201.48954 * 18 16 15 21 21 N 1.31613 * 120.00339 * 12.97437 * 20 18 16 22 22 Si 1.86804 * 119.99691 * 192.97625 * 20 18 16 23 23 H 1.48501 * 109.47083 * 89.99886 * 22 20 18 24 24 H 1.48503 * 109.47162 * 209.99589 * 22 20 18 25 25 H 1.48494 * 109.47191 * 330.00086 * 22 20 18 26 26 C 1.53034 * 109.53942 * 298.50991 * 15 14 13 27 27 C 1.46916 * 120.63808 * 185.60925 * 12 10 9 28 28 C 1.38847 * 120.40591 * 354.62334 * 5 4 2 29 29 H 1.08997 * 109.47634 * 300.00672 * 1 2 3 30 30 H 1.09005 * 109.47227 * 60.00321 * 1 2 3 31 31 H 1.08996 * 109.47549 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47315 * 240.00001 * 2 1 3 33 33 H 1.09001 * 109.47122 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.46919 * 299.99478 * 3 2 1 35 35 H 1.09002 * 109.47058 * 60.00035 * 3 2 1 36 36 H 1.07998 * 119.49520 * 0.04487 * 6 5 4 37 37 H 1.08001 * 119.64957 * 180.31209 * 8 7 6 38 38 H 1.09000 * 109.58345 * 246.20123 * 13 12 10 39 39 H 1.08997 * 109.58866 * 6.62179 * 13 12 10 40 40 H 1.09001 * 109.63149 * 294.86211 * 14 13 12 41 41 H 1.09004 * 109.42847 * 174.72280 * 14 13 12 42 42 H 1.09006 * 109.46121 * 58.53230 * 15 14 13 43 43 H 1.09003 * 109.46952 * 95.18802 * 17 16 15 44 44 H 1.09000 * 109.47336 * 215.18985 * 17 16 15 45 45 H 1.08997 * 109.46841 * 335.19620 * 17 16 15 46 46 H 0.97007 * 120.00307 * 180.02562 * 21 20 18 47 47 H 1.09003 * 109.50057 * 301.41701 * 26 15 14 48 48 H 1.09002 * 109.50035 * 181.31295 * 26 15 14 49 49 H 1.09002 * 109.58649 * 353.37756 * 27 12 10 50 50 H 1.09001 * 109.59084 * 113.65543 * 27 12 10 51 51 H 1.08001 * 120.87998 * 359.95516 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0062 -0.6736 1.1668 5 6 2.1079 -2.0273 1.0995 6 6 2.6669 -2.7432 2.1498 7 7 2.7717 -4.0568 2.0967 8 6 2.3504 -4.7478 1.0580 9 6 1.7821 -4.1048 -0.0421 10 6 1.3163 -4.8837 -1.2093 11 8 0.8625 -6.0004 -1.0529 12 7 1.3896 -4.3533 -2.4461 13 6 2.0356 -3.0519 -2.6655 14 6 3.1078 -3.2159 -3.7533 15 6 2.4675 -3.8185 -5.0059 16 7 3.4785 -3.9435 -6.0588 17 6 4.6677 -4.7701 -5.8380 18 6 3.3119 -3.2878 -7.2494 19 1 2.6570 -2.4308 -7.3068 20 6 3.9846 -3.7245 -8.3823 21 7 4.5740 -4.9013 -8.3850 22 14 4.0533 -2.6419 -9.9031 23 1 5.2502 -1.7658 -9.8333 24 1 4.1350 -3.4959 -11.1153 25 1 2.8294 -1.8036 -9.9696 26 6 1.9008 -5.2013 -4.6764 27 6 0.8198 -5.0624 -3.5998 28 6 1.6546 -2.7112 -0.0205 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.0208 -2.2163 3.0236 37 1 2.4500 -5.8232 1.0557 38 1 1.2911 -2.3244 -2.9890 39 1 2.5010 -2.7143 -1.7395 40 1 3.8962 -3.8772 -3.3936 41 1 3.5318 -2.2411 -3.9944 42 1 1.6629 -3.1690 -5.3507 43 1 4.4987 -5.7664 -6.2467 44 1 5.5244 -4.3143 -6.3344 45 1 4.8648 -4.8448 -4.7686 46 1 5.0444 -5.2063 -9.1766 47 1 2.7005 -5.8439 -4.3080 48 1 1.4656 -5.6396 -5.5745 49 1 0.4828 -6.0518 -3.2906 50 1 -0.0233 -4.4968 -3.9965 51 1 1.2150 -2.1819 -0.8530 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985570983.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:28 Heat of formation + Delta-G solvation = -0.061405 kcal Electronic energy + Delta-G solvation = -31806.522343 eV Core-core repulsion = 27707.672900 eV Total energy + Delta-G solvation = -4098.849443 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.42266 -39.92836 -38.71646 -37.51768 -35.23965 -33.76082 -33.28173 -32.00885 -30.63431 -30.48816 -29.72601 -27.74961 -26.06922 -25.78556 -24.49883 -24.06660 -22.91927 -22.08296 -21.45570 -20.45819 -19.11285 -17.94778 -17.64595 -17.16766 -16.77314 -16.53257 -15.97395 -15.90689 -15.20224 -15.09646 -14.67210 -14.45063 -14.07886 -14.03638 -13.78539 -13.54490 -13.43193 -13.39615 -13.09518 -12.88968 -12.72431 -12.56878 -12.42067 -12.35100 -12.13909 -11.73892 -11.55040 -11.45335 -11.23370 -11.06126 -10.90848 -10.84380 -10.46647 -10.42000 -10.29781 -10.23013 -9.96603 -9.89242 -9.72933 -9.50724 -8.79430 -8.63233 -8.54533 -6.81538 -5.75591 -3.21691 0.41606 0.88534 2.58002 2.71234 2.90517 3.34355 3.40441 3.42292 3.50480 4.03321 4.21327 4.30116 4.33853 4.43399 4.45118 4.51923 4.62345 4.73127 4.91672 5.05659 5.12270 5.13612 5.24501 5.27199 5.30183 5.32862 5.35223 5.41888 5.48430 5.53528 5.61111 5.68965 5.69695 5.72762 5.78021 5.92101 6.05454 6.07712 6.15640 6.27765 6.44792 6.51586 6.74279 6.84902 6.90294 6.93372 7.32641 7.36343 7.59907 7.70078 7.77188 8.04186 8.35156 9.19570 9.83242 10.32043 11.28811 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012191 B = 0.002975 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.208106 B = 9408.897135 C =10745.876890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.073 3.927 3 C -0.148 4.148 4 O -0.301 6.301 5 C 0.076 3.924 6 C 0.093 3.907 7 N -0.448 5.448 8 C 0.115 3.885 9 C -0.136 4.136 10 C 0.561 3.439 11 O -0.534 6.534 12 N -0.596 5.596 13 C 0.091 3.909 14 C -0.147 4.147 15 C 0.180 3.820 16 N -0.596 5.596 17 C 0.164 3.836 18 C -0.257 4.257 19 H 0.068 0.932 20 C 0.002 3.998 21 N -0.906 5.906 22 Si 0.904 3.096 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.280 1.280 26 C -0.145 4.145 27 C 0.114 3.886 28 C -0.143 4.143 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.167 0.833 37 H 0.169 0.831 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.063 0.937 43 H 0.029 0.971 44 H 0.041 0.959 45 H -0.003 1.003 46 H 0.252 0.748 47 H 0.061 0.939 48 H 0.077 0.923 49 H 0.088 0.912 50 H 0.067 0.933 51 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.819 9.791 18.846 22.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.017 3.983 3 C -0.205 4.205 4 O -0.214 6.214 5 C 0.029 3.971 6 C -0.066 4.066 7 N -0.156 5.156 8 C -0.043 4.043 9 C -0.141 4.141 10 C 0.348 3.652 11 O -0.412 6.412 12 N -0.328 5.328 13 C -0.032 4.032 14 C -0.188 4.188 15 C 0.071 3.929 16 N -0.317 5.317 17 C 0.020 3.980 18 C -0.386 4.386 19 H 0.086 0.914 20 C -0.196 4.196 21 N -0.551 5.551 22 Si 0.734 3.266 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.205 1.205 26 C -0.185 4.185 27 C -0.008 4.008 28 C -0.169 4.169 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.184 0.816 37 H 0.186 0.814 38 H 0.088 0.912 39 H 0.104 0.896 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.047 0.953 44 H 0.060 0.940 45 H 0.016 0.984 46 H 0.063 0.937 47 H 0.079 0.921 48 H 0.096 0.904 49 H 0.107 0.893 50 H 0.086 0.914 51 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -6.534 8.817 19.581 22.447 hybrid contribution -0.308 0.946 -1.978 2.214 sum -6.842 9.763 17.604 21.261 Atomic orbital electron populations 1.22417 0.94720 1.03201 1.03691 1.22570 0.94593 0.94146 0.87026 1.21859 1.02403 0.92927 1.03352 1.86164 1.81034 1.15036 1.39166 1.20035 0.97648 0.84177 0.95287 1.22447 0.97287 0.89393 0.97491 1.67834 1.15481 1.06865 1.25451 1.22839 0.93392 1.00846 0.87196 1.20865 1.02647 0.93490 0.97142 1.18056 0.78854 0.85681 0.82596 1.90784 1.46453 1.18749 1.85256 1.48052 1.56614 1.21354 1.06803 1.22486 0.96000 0.84313 1.00356 1.22581 0.97624 1.02363 0.96190 1.20267 0.91373 0.93370 0.87864 1.43965 1.18826 1.56343 1.12600 1.20747 0.88910 0.95425 0.92944 1.19224 1.26352 1.07093 0.85946 0.91388 1.24995 1.01182 0.96013 0.97423 1.70077 1.38951 1.17414 1.28677 0.86264 0.77863 0.79674 0.82764 1.21551 1.21768 1.20541 1.22518 0.97770 1.00834 0.97415 1.21774 0.96170 0.97817 0.85087 1.22241 1.01889 0.94123 0.98691 0.91120 0.90438 0.91984 0.90721 0.91339 0.90086 0.91340 0.81552 0.81393 0.91203 0.89561 0.91736 0.90702 0.91919 0.95268 0.94047 0.98447 0.93742 0.92064 0.90410 0.89324 0.91436 0.82764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.15 9.18 37.16 0.34 -0.81 16 2 C 0.07 0.51 2.85 -26.73 -0.08 0.44 16 3 C -0.15 -0.84 9.56 37.16 0.36 -0.48 16 4 O -0.30 -2.71 9.81 -19.50 -0.19 -2.91 16 5 C 0.08 0.76 6.61 -39.13 -0.26 0.50 16 6 C 0.09 0.94 11.13 -17.30 -0.19 0.75 16 7 N -0.45 -5.32 10.34 -12.80 -0.13 -5.45 16 8 C 0.11 1.42 10.77 -17.14 -0.18 1.23 16 9 C -0.14 -1.69 5.38 -104.84 -0.56 -2.26 16 10 C 0.56 8.21 7.43 -12.33 -0.09 8.12 16 11 O -0.53 -9.36 16.21 5.32 0.09 -9.28 16 12 N -0.60 -8.22 2.97 -173.62 -0.51 -8.73 16 13 C 0.09 1.10 4.80 -3.48 -0.02 1.08 16 14 C -0.15 -2.27 5.34 -26.39 -0.14 -2.41 16 15 C 0.18 3.36 2.55 -67.89 -0.17 3.18 16 16 N -0.60 -14.15 2.81 -173.44 -0.49 -14.64 16 17 C 0.16 3.96 8.03 59.85 0.48 4.44 16 18 C -0.26 -6.75 9.61 -15.06 -0.14 -6.90 16 19 H 0.07 1.73 7.81 -52.48 -0.41 1.32 16 20 C 0.00 0.06 5.11 -17.44 -0.09 -0.03 16 21 N -0.91 -25.95 10.62 55.49 0.59 -25.36 16 22 Si 0.90 21.30 29.57 -169.99 -5.03 16.27 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 26 C -0.15 -2.53 5.34 -26.61 -0.14 -2.67 16 27 C 0.11 1.65 6.44 -3.71 -0.02 1.63 16 28 C -0.14 -1.48 5.65 -38.71 -0.22 -1.70 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.45 6.91 -51.93 -0.36 0.09 16 32 H 0.07 0.51 6.35 -51.93 -0.33 0.18 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.17 1.28 8.06 -52.49 -0.42 0.85 16 37 H 0.17 1.97 7.97 -52.49 -0.42 1.55 16 38 H 0.07 0.71 8.05 -51.93 -0.42 0.29 16 39 H 0.09 0.93 4.26 -51.93 -0.22 0.71 16 40 H 0.06 1.08 6.72 -51.93 -0.35 0.73 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.06 1.16 7.85 -51.93 -0.41 0.76 16 43 H 0.03 0.77 7.37 -51.93 -0.38 0.39 16 44 H 0.04 1.08 7.24 -51.93 -0.38 0.70 16 45 H 0.00 -0.06 6.47 -51.93 -0.34 -0.40 16 46 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 47 H 0.06 1.16 7.72 -51.93 -0.40 0.76 16 48 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 49 H 0.09 1.35 7.00 -51.93 -0.36 0.98 16 50 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 51 H 0.16 1.38 3.36 -52.49 -0.18 1.21 16 LS Contribution 396.03 15.07 5.97 5.97 Total: -1.00 -31.36 396.03 -8.74 -40.10 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -7.89 Total: -0.08 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -1.14 Total: 4.10 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: -0.55 Total: -54.18 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: -0.11 Total: -12.18 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.36 -8.74 -40.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985570983.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.037 kcal (2) G-P(sol) polarization free energy of solvation -31.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds