Wall clock time and date at job start Wed Apr 1 2020 04:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47160 * 2 1 4 4 O 1.42900 * 109.46852 * 119.99536 * 2 1 3 5 5 C 1.35923 * 116.99681 * 84.77475 * 4 2 1 6 6 C 1.38854 * 120.40713 * 174.59700 * 5 4 2 7 7 N 1.31885 * 121.00216 * 180.02562 * 6 5 4 8 8 C 1.31680 * 121.93734 * 359.70080 * 7 6 5 9 9 C 1.39522 * 120.69531 * 0.59052 * 8 7 6 10 10 C 1.47846 * 120.53297 * 179.69959 * 9 8 7 11 11 O 1.21552 * 120.00326 * 32.83055 * 10 9 8 12 12 N 1.34779 * 120.00462 * 212.55306 * 10 9 8 13 13 C 1.46933 * 120.62448 * 5.33389 * 12 10 9 14 14 C 1.53621 * 108.54297 * 126.36794 * 13 12 10 15 15 C 1.53039 * 109.24293 * 54.85385 * 14 13 12 16 16 N 1.46500 * 109.45957 * 178.48993 * 15 14 13 17 17 C 1.46501 * 120.00105 * 60.06836 * 16 15 14 18 18 C 1.36943 * 120.00195 * 240.06777 * 16 15 14 19 19 H 1.08005 * 119.99536 * 21.48741 * 18 16 15 20 20 C 1.38804 * 119.99984 * 201.48954 * 18 16 15 21 21 N 1.31613 * 120.00339 * 12.97437 * 20 18 16 22 22 Si 1.86804 * 119.99691 * 192.97625 * 20 18 16 23 23 H 1.48501 * 109.47083 * 89.99886 * 22 20 18 24 24 H 1.48503 * 109.47162 * 209.99589 * 22 20 18 25 25 H 1.48494 * 109.47191 * 330.00086 * 22 20 18 26 26 C 1.53034 * 109.53942 * 298.50991 * 15 14 13 27 27 C 1.46916 * 120.63808 * 185.60925 * 12 10 9 28 28 C 1.38847 * 120.40591 * 354.62334 * 5 4 2 29 29 H 1.08997 * 109.47634 * 300.00672 * 1 2 3 30 30 H 1.09005 * 109.47227 * 60.00321 * 1 2 3 31 31 H 1.08996 * 109.47549 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47315 * 240.00001 * 2 1 3 33 33 H 1.09001 * 109.47122 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.46919 * 299.99478 * 3 2 1 35 35 H 1.09002 * 109.47058 * 60.00035 * 3 2 1 36 36 H 1.07998 * 119.49520 * 0.04487 * 6 5 4 37 37 H 1.08001 * 119.64957 * 180.31209 * 8 7 6 38 38 H 1.09000 * 109.58345 * 246.20123 * 13 12 10 39 39 H 1.08997 * 109.58866 * 6.62179 * 13 12 10 40 40 H 1.09001 * 109.63149 * 294.86211 * 14 13 12 41 41 H 1.09004 * 109.42847 * 174.72280 * 14 13 12 42 42 H 1.09006 * 109.46121 * 58.53230 * 15 14 13 43 43 H 1.09003 * 109.46952 * 95.18802 * 17 16 15 44 44 H 1.09000 * 109.47336 * 215.18985 * 17 16 15 45 45 H 1.08997 * 109.46841 * 335.19620 * 17 16 15 46 46 H 0.97007 * 120.00307 * 180.02562 * 21 20 18 47 47 H 1.09003 * 109.50057 * 301.41701 * 26 15 14 48 48 H 1.09002 * 109.50035 * 181.31295 * 26 15 14 49 49 H 1.09002 * 109.58649 * 353.37756 * 27 12 10 50 50 H 1.09001 * 109.59084 * 113.65543 * 27 12 10 51 51 H 1.08001 * 120.87998 * 359.95516 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0062 -0.6736 1.1668 5 6 2.1079 -2.0273 1.0995 6 6 2.6669 -2.7432 2.1498 7 7 2.7717 -4.0568 2.0967 8 6 2.3504 -4.7478 1.0580 9 6 1.7821 -4.1048 -0.0421 10 6 1.3163 -4.8837 -1.2093 11 8 0.8625 -6.0004 -1.0529 12 7 1.3896 -4.3533 -2.4461 13 6 2.0356 -3.0519 -2.6655 14 6 3.1078 -3.2159 -3.7533 15 6 2.4675 -3.8185 -5.0059 16 7 3.4785 -3.9435 -6.0588 17 6 4.6677 -4.7701 -5.8380 18 6 3.3119 -3.2878 -7.2494 19 1 2.6570 -2.4308 -7.3068 20 6 3.9846 -3.7245 -8.3823 21 7 4.5740 -4.9013 -8.3850 22 14 4.0533 -2.6419 -9.9031 23 1 5.2502 -1.7658 -9.8333 24 1 4.1350 -3.4959 -11.1153 25 1 2.8294 -1.8036 -9.9696 26 6 1.9008 -5.2013 -4.6764 27 6 0.8198 -5.0624 -3.5998 28 6 1.6546 -2.7112 -0.0205 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.0208 -2.2163 3.0236 37 1 2.4500 -5.8232 1.0557 38 1 1.2911 -2.3244 -2.9890 39 1 2.5010 -2.7143 -1.7395 40 1 3.8962 -3.8772 -3.3936 41 1 3.5318 -2.2411 -3.9944 42 1 1.6629 -3.1690 -5.3507 43 1 4.4987 -5.7664 -6.2467 44 1 5.5244 -4.3143 -6.3344 45 1 4.8648 -4.8448 -4.7686 46 1 5.0444 -5.2063 -9.1766 47 1 2.7005 -5.8439 -4.3080 48 1 1.4656 -5.6396 -5.5745 49 1 0.4828 -6.0518 -3.2906 50 1 -0.0233 -4.4968 -3.9965 51 1 1.2150 -2.1819 -0.8530 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985570983.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:27 Heat of formation + Delta-G solvation = -18.478262 kcal Electronic energy + Delta-G solvation = -31807.320958 eV Core-core repulsion = 27707.672900 eV Total energy + Delta-G solvation = -4099.648058 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.31470 -40.94211 -39.56806 -38.85628 -36.82239 -34.52412 -34.27615 -33.52267 -31.80668 -31.48563 -31.21294 -28.18893 -28.04878 -27.02032 -25.47689 -25.22798 -24.08318 -23.56337 -22.11763 -21.60638 -20.38950 -18.94757 -18.81425 -18.46515 -17.93732 -17.47507 -17.12726 -16.90710 -16.64059 -16.21141 -15.75233 -15.37738 -15.25821 -15.14221 -15.10665 -14.80732 -14.69688 -14.55702 -14.09184 -13.96772 -13.72887 -13.46527 -13.32299 -13.19526 -13.13312 -13.01454 -12.81974 -12.75659 -12.64286 -12.38626 -12.26963 -12.07208 -11.98654 -11.82804 -11.74704 -11.67207 -11.50338 -11.26432 -10.86290 -10.65082 -10.51255 -9.81308 -9.52342 -8.78330 -7.79968 -5.27758 -0.46660 0.05598 1.48241 1.49176 1.54232 1.57702 1.82112 2.01970 2.51846 2.62045 3.10544 3.33496 3.42257 3.52419 3.59021 3.67238 3.75146 3.85415 3.88114 3.97986 4.05491 4.10912 4.15304 4.24725 4.32880 4.36495 4.48583 4.64140 4.68475 4.69495 4.74287 4.75126 4.79205 4.84660 4.84766 4.89026 4.92554 4.94536 5.05862 5.22023 5.24681 5.26954 5.31860 5.33563 5.45788 5.54968 5.66522 5.71616 6.14952 6.22922 6.34205 6.75397 6.91721 7.16483 7.89519 8.34214 9.23264 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012191 B = 0.002975 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.208106 B = 9408.897135 C =10745.876890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.063 3.937 3 C -0.147 4.147 4 O -0.304 6.304 5 C 0.083 3.917 6 C 0.094 3.906 7 N -0.462 5.462 8 C 0.104 3.896 9 C -0.148 4.148 10 C 0.562 3.438 11 O -0.570 6.570 12 N -0.596 5.596 13 C 0.098 3.902 14 C -0.137 4.137 15 C 0.174 3.826 16 N -0.610 5.610 17 C 0.184 3.816 18 C -0.258 4.258 19 H 0.079 0.921 20 C -0.057 4.057 21 N -0.942 5.942 22 Si 0.967 3.033 23 H -0.288 1.288 24 H -0.301 1.301 25 H -0.264 1.264 26 C -0.134 4.134 27 C 0.123 3.877 28 C -0.136 4.136 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.053 0.947 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.096 0.904 35 H 0.069 0.931 36 H 0.191 0.809 37 H 0.164 0.836 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.047 0.953 41 H 0.081 0.919 42 H 0.071 0.929 43 H -0.003 1.003 44 H 0.013 0.987 45 H 0.022 0.978 46 H 0.245 0.755 47 H 0.039 0.961 48 H 0.057 0.943 49 H 0.080 0.920 50 H 0.093 0.907 51 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.034 12.910 19.987 25.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.008 3.992 3 C -0.204 4.204 4 O -0.217 6.217 5 C 0.035 3.965 6 C -0.065 4.065 7 N -0.170 5.170 8 C -0.054 4.054 9 C -0.153 4.153 10 C 0.350 3.650 11 O -0.451 6.451 12 N -0.327 5.327 13 C -0.024 4.024 14 C -0.176 4.176 15 C 0.067 3.933 16 N -0.333 5.333 17 C 0.039 3.961 18 C -0.388 4.388 19 H 0.097 0.903 20 C -0.251 4.251 21 N -0.590 5.590 22 Si 0.796 3.204 23 H -0.215 1.215 24 H -0.228 1.228 25 H -0.188 1.188 26 C -0.174 4.174 27 C 0.001 3.999 28 C -0.163 4.163 29 H 0.089 0.911 30 H 0.112 0.888 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.115 0.885 35 H 0.088 0.912 36 H 0.208 0.792 37 H 0.181 0.819 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.066 0.934 41 H 0.100 0.900 42 H 0.089 0.911 43 H 0.015 0.985 44 H 0.032 0.968 45 H 0.040 0.960 46 H 0.054 0.946 47 H 0.058 0.942 48 H 0.076 0.924 49 H 0.099 0.901 50 H 0.111 0.889 51 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -7.776 11.977 20.751 25.190 hybrid contribution 0.053 0.047 -2.238 2.239 sum -7.723 12.024 18.513 23.387 Atomic orbital electron populations 1.22421 0.94063 1.02874 1.04551 1.22845 0.95182 0.94719 0.86468 1.21888 1.02183 0.92107 1.04232 1.86187 1.80901 1.14255 1.40319 1.20025 0.96893 0.84755 0.94857 1.22885 0.96367 0.88945 0.98334 1.67858 1.16010 1.07826 1.25330 1.22832 0.93981 1.00950 0.87587 1.20662 1.04027 0.94243 0.96373 1.18363 0.78100 0.85290 0.83213 1.90764 1.48097 1.20419 1.85816 1.48091 1.56419 1.21833 1.06338 1.22613 0.95818 0.84007 0.99963 1.22397 0.98012 1.01845 0.95389 1.20529 0.90733 0.94100 0.87896 1.44201 1.19847 1.55981 1.13224 1.20382 0.88454 0.93554 0.93713 1.19639 1.25353 1.07112 0.86684 0.90330 1.25770 1.01738 0.97199 1.00415 1.70260 1.40436 1.19224 1.29038 0.85256 0.78224 0.77935 0.78976 1.21525 1.22812 1.18838 1.22314 0.97931 0.99597 0.97591 1.21616 0.95587 0.98304 0.84402 1.22329 1.01417 0.93115 0.99404 0.91130 0.88834 0.92836 0.90141 0.91712 0.88545 0.91179 0.79176 0.81895 0.87907 0.87747 0.93430 0.90040 0.91102 0.98474 0.96806 0.95962 0.94556 0.94229 0.92440 0.90138 0.88896 0.81113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.67 9.18 71.98 0.66 -1.01 16 2 C 0.06 0.67 2.85 30.59 0.09 0.76 16 3 C -0.15 -1.18 9.56 71.98 0.69 -0.49 16 4 O -0.30 -4.52 9.81 -92.68 -0.91 -5.43 16 5 C 0.08 1.42 6.61 22.56 0.15 1.57 16 6 C 0.09 1.69 11.13 84.83 0.94 2.63 16 7 N -0.46 -10.39 10.34 -194.40 -2.01 -12.40 16 8 C 0.10 2.49 10.77 85.03 0.92 3.41 16 9 C -0.15 -3.46 5.38 -20.01 -0.11 -3.57 16 10 C 0.56 15.83 7.43 86.79 0.65 16.47 16 11 O -0.57 -20.00 16.21 -3.88 -0.06 -20.06 16 12 N -0.60 -15.23 2.97 -821.48 -2.44 -17.67 16 13 C 0.10 2.02 4.80 86.51 0.42 2.44 16 14 C -0.14 -3.90 5.34 30.82 0.16 -3.74 16 15 C 0.17 6.27 2.55 45.02 0.11 6.38 16 16 N -0.61 -28.97 2.81 -702.63 -1.98 -30.95 16 17 C 0.18 9.11 8.03 127.77 1.03 10.14 16 18 C -0.26 -13.44 9.61 84.03 0.81 -12.63 16 19 H 0.08 3.86 7.81 -2.91 -0.02 3.84 16 20 C -0.06 -3.09 5.11 84.86 0.43 -2.66 16 21 N -0.94 -55.55 10.62 21.65 0.23 -55.32 16 22 Si 0.97 43.89 29.57 68.60 2.03 45.92 16 23 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 24 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 25 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 26 C -0.13 -4.67 5.34 30.67 0.16 -4.50 16 27 C 0.12 3.42 6.44 86.37 0.56 3.98 16 28 C -0.14 -2.45 5.65 22.83 0.13 -2.32 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.05 0.60 6.91 -2.39 -0.02 0.58 16 32 H 0.08 0.77 6.35 -2.39 -0.02 0.75 16 33 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.19 2.38 8.06 -2.91 -0.02 2.36 16 37 H 0.16 3.93 7.97 -2.91 -0.02 3.90 16 38 H 0.10 1.55 8.05 -2.39 -0.02 1.53 16 39 H 0.10 1.86 4.26 -2.39 -0.01 1.85 16 40 H 0.05 1.53 6.72 -2.39 -0.02 1.51 16 41 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 42 H 0.07 2.45 7.85 -2.38 -0.02 2.43 16 43 H 0.00 -0.17 7.37 -2.39 -0.02 -0.19 16 44 H 0.01 0.72 7.24 -2.39 -0.02 0.70 16 45 H 0.02 0.96 6.47 -2.39 -0.02 0.94 16 46 H 0.25 14.18 8.31 -92.70 -0.77 13.41 16 47 H 0.04 1.53 7.72 -2.39 -0.02 1.51 16 48 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 49 H 0.08 2.41 7.00 -2.39 -0.02 2.40 16 50 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 51 H 0.17 2.40 3.36 -2.91 -0.01 2.39 16 Total: -1.00 -69.43 396.03 3.59 -65.84 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 0.93 Total: 13.22 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: 7.79 Total: 16.86 kcal Atomic # 7 Polarization: -110.14 SS G_CDS: -6.19 Total: -116.34 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.97 Total: -25.50 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -69.43 3.59 -65.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985570983.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.360 kcal (2) G-P(sol) polarization free energy of solvation -69.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds