Wall clock time and date at job start Wed Apr 1 2020 04:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46944 * 2 1 4 4 O 1.42897 * 109.47417 * 239.99773 * 2 1 3 5 5 C 1.35686 * 117.00018 * 270.00450 * 4 2 1 6 6 C 1.38896 * 119.62082 * 180.02562 * 5 4 2 7 7 C 1.39573 * 118.94507 * 179.97438 * 6 5 4 8 8 C 1.48168 * 120.89226 * 179.97438 * 7 6 5 9 9 O 1.21511 * 120.00149 * 32.90519 * 8 7 6 10 10 N 1.34780 * 119.99785 * 212.91026 * 8 7 6 11 11 C 1.46928 * 120.63358 * 5.21199 * 10 8 7 12 12 C 1.53619 * 108.54189 * 126.37124 * 11 10 8 13 13 C 1.53037 * 109.24159 * 54.85655 * 12 11 10 14 14 N 1.46504 * 109.46196 * 178.48856 * 13 12 11 15 15 C 1.46503 * 119.99695 * 60.07034 * 14 13 12 16 16 C 1.36929 * 120.00237 * 240.07239 * 14 13 12 17 17 H 1.08004 * 120.00415 * 24.34738 * 16 14 13 18 18 C 1.38817 * 120.00405 * 204.35355 * 16 14 13 19 19 N 1.31625 * 119.99584 * 15.52881 * 18 16 14 20 20 Si 1.86791 * 120.00400 * 195.53383 * 18 16 14 21 21 H 1.48495 * 109.47317 * 59.99415 * 20 18 16 22 22 H 1.48495 * 109.47329 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47017 * 299.99719 * 20 18 16 24 24 C 1.53038 * 109.54168 * 298.50907 * 13 12 11 25 25 C 1.46923 * 120.62501 * 185.49832 * 10 8 7 26 26 C 1.39966 * 118.21646 * 359.97438 * 7 6 5 27 27 C 1.37978 * 119.13424 * 359.97438 * 26 7 6 28 28 N 1.31912 * 120.97645 * 359.74391 * 27 26 7 29 29 H 1.08998 * 109.47096 * 300.00426 * 1 2 3 30 30 H 1.09001 * 109.46842 * 60.00088 * 1 2 3 31 31 H 1.08997 * 109.47329 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46842 * 119.99912 * 2 1 3 33 33 H 1.08998 * 109.47572 * 59.99866 * 3 2 1 34 34 H 1.09004 * 109.47076 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47279 * 299.99644 * 3 2 1 36 36 H 1.07998 * 120.53034 * 359.95292 * 6 5 4 37 37 H 1.08997 * 109.59038 * 246.20889 * 11 10 8 38 38 H 1.08998 * 109.58248 * 6.63222 * 11 10 8 39 39 H 1.09000 * 109.63420 * 294.86620 * 12 11 10 40 40 H 1.09001 * 109.43059 * 174.72994 * 12 11 10 41 41 H 1.09000 * 109.45811 * 58.53260 * 13 12 11 42 42 H 1.08992 * 109.47102 * 92.72763 * 15 14 13 43 43 H 1.09001 * 109.46833 * 212.72606 * 15 14 13 44 44 H 1.08998 * 109.47224 * 332.72673 * 15 14 13 45 45 H 0.97001 * 120.00052 * 180.02562 * 19 18 16 46 46 H 1.08993 * 109.49924 * 301.41569 * 24 13 12 47 47 H 1.08994 * 109.49850 * 181.31184 * 24 13 12 48 48 H 1.08997 * 109.59148 * 353.36548 * 25 10 8 49 49 H 1.09002 * 109.58705 * 113.65870 * 25 10 8 50 50 H 1.08006 * 120.43314 * 180.02562 * 26 7 6 51 51 H 1.08002 * 119.51172 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.2117 -2.0110 -1.0651 6 6 2.6748 -2.7201 -2.1661 7 6 2.8815 -4.0951 -2.0458 8 6 3.3739 -4.8936 -3.1926 9 8 4.1380 -4.3961 -3.9959 10 7 2.9743 -6.1717 -3.3449 11 6 1.9644 -6.7521 -2.4494 12 6 0.8339 -7.3428 -3.3056 13 6 1.4268 -8.3338 -4.3098 14 7 0.3487 -8.9270 -5.1048 15 6 -0.5151 -8.0711 -5.9218 16 6 0.1484 -10.2814 -5.0842 17 1 0.4798 -10.8636 -4.2370 18 6 -0.4805 -10.9065 -6.1523 19 7 -0.6099 -10.2759 -7.3004 20 14 -1.1434 -12.6422 -5.9602 21 1 -2.1620 -12.6665 -4.8800 22 1 -1.7652 -13.0787 -7.2361 23 1 -0.0303 -13.5614 -5.6116 24 6 2.4006 -7.6025 -5.2366 25 6 3.5448 -7.0130 -4.4058 26 6 2.6112 -4.6996 -0.8126 27 6 2.1545 -3.9213 0.2312 28 7 1.9760 -2.6229 0.0824 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 2.8714 -2.2155 -3.1005 37 1 2.4190 -7.5383 -1.8467 38 1 1.5638 -5.9752 -1.7983 39 1 0.3242 -6.5424 -3.8420 40 1 0.1229 -7.8595 -2.6609 41 1 1.9574 -9.1205 -3.7734 42 1 -0.1109 -8.0054 -6.9318 43 1 -1.5179 -8.4967 -5.9588 44 1 -0.5593 -7.0745 -5.4825 45 1 -1.0497 -10.7124 -8.0466 46 1 1.8763 -6.7997 -5.7548 47 1 2.8048 -8.3041 -5.9662 48 1 4.1873 -6.4084 -5.0459 49 1 4.1277 -7.8187 -3.9594 50 1 2.7590 -5.7612 -0.6796 51 1 1.9444 -4.3814 1.1855 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985744509.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:19 Heat of formation + Delta-G solvation = -0.347198 kcal Electronic energy + Delta-G solvation = -30944.559104 eV Core-core repulsion = 26845.697268 eV Total energy + Delta-G solvation = -4098.861836 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.25320 -40.00820 -38.35763 -37.52717 -35.18151 -33.65019 -33.19361 -32.06771 -30.95865 -30.18736 -29.75287 -27.61117 -26.05828 -25.85273 -24.37664 -23.82600 -22.79168 -22.39043 -21.47193 -20.20803 -19.12720 -18.22449 -17.45776 -16.82892 -16.41011 -16.10900 -16.03602 -15.77632 -15.19947 -15.02036 -14.70156 -14.57416 -14.15630 -13.96987 -13.78858 -13.56243 -13.42840 -13.27191 -13.05165 -12.74554 -12.65796 -12.54663 -12.35713 -12.26208 -12.08166 -11.61571 -11.51106 -11.29506 -11.09865 -11.00196 -10.91089 -10.77483 -10.45180 -10.34405 -10.27383 -10.20597 -10.08230 -9.87994 -9.71410 -9.56077 -8.74948 -8.62254 -8.50533 -6.75122 -5.74908 -3.21296 0.53876 0.85581 2.51223 2.74930 3.02685 3.36706 3.42906 3.43300 3.52207 3.94618 4.21060 4.46705 4.51652 4.62319 4.63085 4.73489 4.76591 4.91211 5.02670 5.19541 5.20330 5.27849 5.33901 5.35023 5.40008 5.41268 5.45748 5.47374 5.49689 5.57671 5.72283 5.76314 5.79020 5.84169 5.85090 5.97236 6.06182 6.11574 6.20908 6.32975 6.49991 6.56113 6.76362 6.94552 6.97808 6.98319 7.32705 7.36683 7.50894 7.69488 7.77951 8.04748 8.38915 9.21110 9.85206 10.35857 11.30048 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018876 B = 0.002192 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.002771 B =12769.426082 C =13211.497396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.081 3.919 3 C -0.151 4.151 4 O -0.300 6.300 5 C 0.323 3.677 6 C -0.138 4.138 7 C -0.042 4.042 8 C 0.557 3.443 9 O -0.533 6.533 10 N -0.593 5.593 11 C 0.090 3.910 12 C -0.148 4.148 13 C 0.179 3.821 14 N -0.594 5.594 15 C 0.162 3.838 16 C -0.258 4.258 17 H 0.066 0.934 18 C 0.003 3.997 19 N -0.903 5.903 20 Si 0.903 3.097 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.283 1.283 24 C -0.145 4.145 25 C 0.113 3.887 26 C -0.189 4.189 27 C 0.137 3.863 28 N -0.530 5.530 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.150 0.850 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.027 0.973 43 H 0.039 0.961 44 H -0.001 1.001 45 H 0.253 0.747 46 H 0.060 0.940 47 H 0.077 0.923 48 H 0.087 0.913 49 H 0.069 0.931 50 H 0.153 0.847 51 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.355 17.526 17.279 25.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.025 3.975 3 C -0.208 4.208 4 O -0.207 6.207 5 C 0.144 3.856 6 C -0.160 4.160 7 C -0.053 4.053 8 C 0.344 3.656 9 O -0.411 6.411 10 N -0.325 5.325 11 C -0.033 4.033 12 C -0.188 4.188 13 C 0.070 3.930 14 N -0.315 5.315 15 C 0.017 3.983 16 C -0.388 4.388 17 H 0.084 0.916 18 C -0.196 4.196 19 N -0.547 5.547 20 Si 0.733 3.267 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.209 1.209 24 C -0.185 4.185 25 C -0.009 4.009 26 C -0.210 4.210 27 C -0.018 4.018 28 N -0.254 5.254 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.168 0.832 37 H 0.091 0.909 38 H 0.111 0.889 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.045 0.955 43 H 0.058 0.942 44 H 0.018 0.982 45 H 0.063 0.937 46 H 0.078 0.922 47 H 0.096 0.904 48 H 0.106 0.894 49 H 0.087 0.913 50 H 0.171 0.829 51 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 5.392 18.381 17.116 25.688 hybrid contribution -0.314 -1.541 -0.579 1.676 sum 5.078 16.840 16.538 24.142 Atomic orbital electron populations 1.22224 0.94768 1.03017 1.02656 1.22369 0.94475 0.92785 0.87871 1.21914 1.02028 0.93858 1.03042 1.86322 1.80021 1.15626 1.38739 1.19594 0.91770 0.84872 0.89339 1.21080 1.02677 0.92607 0.99630 1.20127 0.97221 0.93330 0.94636 1.18124 0.81402 0.81556 0.84502 1.90780 1.36362 1.70297 1.43656 1.48051 1.40590 1.10822 1.33075 1.22540 0.89410 0.98509 0.92811 1.22567 0.97031 1.00252 0.98918 1.20301 0.88774 0.92928 0.90980 1.43927 1.31582 1.03522 1.52478 1.20719 0.94475 0.89411 0.93712 1.19130 1.35997 0.83173 1.00475 0.91575 1.25041 1.02005 0.97776 0.94751 1.70067 1.45985 1.37556 1.01135 0.86366 0.79048 0.84517 0.76775 1.21116 1.21701 1.20928 1.22510 0.96421 1.00372 0.99188 1.21788 0.96593 0.93426 0.89056 1.22462 1.03007 1.02334 0.93173 1.22386 0.93374 0.87367 0.98689 1.67119 1.20899 1.12945 1.24422 0.91067 0.91905 0.91899 0.89198 0.90462 0.91794 0.91546 0.83210 0.90860 0.88867 0.91912 0.90636 0.91840 0.95473 0.94182 0.98246 0.93687 0.92166 0.90395 0.89437 0.91304 0.82949 0.81655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 9.53 37.16 0.35 -0.95 16 2 C 0.08 0.70 3.11 -26.73 -0.08 0.61 16 3 C -0.15 -0.97 9.56 37.16 0.36 -0.62 16 4 O -0.30 -3.38 9.76 -18.76 -0.18 -3.56 16 5 C 0.32 3.82 7.45 -17.16 -0.13 3.69 16 6 C -0.14 -1.73 9.64 -38.84 -0.37 -2.11 16 7 C -0.04 -0.52 5.39 -104.67 -0.56 -1.09 16 8 C 0.56 8.24 7.46 -12.18 -0.09 8.15 16 9 O -0.53 -9.57 16.27 5.36 0.09 -9.48 16 10 N -0.59 -8.23 2.97 -173.50 -0.51 -8.75 16 11 C 0.09 1.07 4.82 -3.49 -0.02 1.05 16 12 C -0.15 -2.29 5.33 -26.39 -0.14 -2.43 16 13 C 0.18 3.37 2.55 -67.89 -0.17 3.20 16 14 N -0.59 -14.22 2.80 -173.44 -0.49 -14.71 16 15 C 0.16 3.90 8.07 59.85 0.48 4.39 16 16 C -0.26 -6.85 9.55 -15.06 -0.14 -6.99 16 17 H 0.07 1.70 7.85 -52.48 -0.41 1.29 16 18 C 0.00 0.09 5.02 -17.43 -0.09 0.00 16 19 N -0.90 -26.06 10.96 55.49 0.61 -25.45 16 20 Si 0.90 21.44 29.58 -169.99 -5.03 16.41 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 C -0.14 -2.57 5.34 -26.61 -0.14 -2.71 16 25 C 0.11 1.68 6.44 -3.71 -0.02 1.65 16 26 C -0.19 -1.79 7.48 -39.03 -0.29 -2.08 16 27 C 0.14 1.19 11.17 -17.61 -0.20 0.99 16 28 N -0.53 -5.64 8.61 -13.38 -0.12 -5.75 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.09 0.79 6.97 -51.93 -0.36 0.43 16 33 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.15 1.90 8.03 -52.49 -0.42 1.48 16 37 H 0.07 0.74 8.06 -51.93 -0.42 0.32 16 38 H 0.09 0.96 4.26 -51.93 -0.22 0.73 16 39 H 0.06 1.06 6.72 -51.93 -0.35 0.71 16 40 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.06 1.20 7.87 -51.93 -0.41 0.79 16 42 H 0.03 0.72 7.45 -51.93 -0.39 0.33 16 43 H 0.04 1.04 7.34 -51.93 -0.38 0.66 16 44 H 0.00 -0.02 6.46 -51.93 -0.34 -0.36 16 45 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 46 H 0.06 1.16 7.72 -51.93 -0.40 0.76 16 47 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 48 H 0.09 1.35 7.00 -51.93 -0.36 0.99 16 49 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 50 H 0.15 1.15 5.85 -52.48 -0.31 0.84 16 51 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 401.42 15.07 6.05 6.05 Total: -1.00 -31.94 401.42 -8.98 -40.92 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -8.13 Total: -0.44 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -1.26 Total: 4.76 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: -0.51 Total: -54.66 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -0.10 Total: -13.05 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.94 -8.98 -40.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985744509.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.576 kcal (2) G-P(sol) polarization free energy of solvation -31.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds