Wall clock time and date at job start Wed Apr 1 2020 04:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46944 * 2 1 4 4 O 1.42897 * 109.47417 * 239.99773 * 2 1 3 5 5 C 1.35686 * 117.00018 * 270.00450 * 4 2 1 6 6 C 1.38896 * 119.62082 * 180.02562 * 5 4 2 7 7 C 1.39573 * 118.94507 * 179.97438 * 6 5 4 8 8 C 1.48168 * 120.89226 * 179.97438 * 7 6 5 9 9 O 1.21511 * 120.00149 * 32.90519 * 8 7 6 10 10 N 1.34780 * 119.99785 * 212.91026 * 8 7 6 11 11 C 1.46928 * 120.63358 * 5.21199 * 10 8 7 12 12 C 1.53619 * 108.54189 * 126.37124 * 11 10 8 13 13 C 1.53037 * 109.24159 * 54.85655 * 12 11 10 14 14 N 1.46504 * 109.46196 * 178.48856 * 13 12 11 15 15 C 1.46503 * 119.99695 * 60.07034 * 14 13 12 16 16 C 1.36929 * 120.00237 * 240.07239 * 14 13 12 17 17 H 1.08004 * 120.00415 * 24.34738 * 16 14 13 18 18 C 1.38817 * 120.00405 * 204.35355 * 16 14 13 19 19 N 1.31625 * 119.99584 * 15.52881 * 18 16 14 20 20 Si 1.86791 * 120.00400 * 195.53383 * 18 16 14 21 21 H 1.48495 * 109.47317 * 59.99415 * 20 18 16 22 22 H 1.48495 * 109.47329 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47017 * 299.99719 * 20 18 16 24 24 C 1.53038 * 109.54168 * 298.50907 * 13 12 11 25 25 C 1.46923 * 120.62501 * 185.49832 * 10 8 7 26 26 C 1.39966 * 118.21646 * 359.97438 * 7 6 5 27 27 C 1.37978 * 119.13424 * 359.97438 * 26 7 6 28 28 N 1.31912 * 120.97645 * 359.74391 * 27 26 7 29 29 H 1.08998 * 109.47096 * 300.00426 * 1 2 3 30 30 H 1.09001 * 109.46842 * 60.00088 * 1 2 3 31 31 H 1.08997 * 109.47329 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46842 * 119.99912 * 2 1 3 33 33 H 1.08998 * 109.47572 * 59.99866 * 3 2 1 34 34 H 1.09004 * 109.47076 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47279 * 299.99644 * 3 2 1 36 36 H 1.07998 * 120.53034 * 359.95292 * 6 5 4 37 37 H 1.08997 * 109.59038 * 246.20889 * 11 10 8 38 38 H 1.08998 * 109.58248 * 6.63222 * 11 10 8 39 39 H 1.09000 * 109.63420 * 294.86620 * 12 11 10 40 40 H 1.09001 * 109.43059 * 174.72994 * 12 11 10 41 41 H 1.09000 * 109.45811 * 58.53260 * 13 12 11 42 42 H 1.08992 * 109.47102 * 92.72763 * 15 14 13 43 43 H 1.09001 * 109.46833 * 212.72606 * 15 14 13 44 44 H 1.08998 * 109.47224 * 332.72673 * 15 14 13 45 45 H 0.97001 * 120.00052 * 180.02562 * 19 18 16 46 46 H 1.08993 * 109.49924 * 301.41569 * 24 13 12 47 47 H 1.08994 * 109.49850 * 181.31184 * 24 13 12 48 48 H 1.08997 * 109.59148 * 353.36548 * 25 10 8 49 49 H 1.09002 * 109.58705 * 113.65870 * 25 10 8 50 50 H 1.08006 * 120.43314 * 180.02562 * 26 7 6 51 51 H 1.08002 * 119.51172 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.2117 -2.0110 -1.0651 6 6 2.6748 -2.7201 -2.1661 7 6 2.8815 -4.0951 -2.0458 8 6 3.3739 -4.8936 -3.1926 9 8 4.1380 -4.3961 -3.9959 10 7 2.9743 -6.1717 -3.3449 11 6 1.9644 -6.7521 -2.4494 12 6 0.8339 -7.3428 -3.3056 13 6 1.4268 -8.3338 -4.3098 14 7 0.3487 -8.9270 -5.1048 15 6 -0.5151 -8.0711 -5.9218 16 6 0.1484 -10.2814 -5.0842 17 1 0.4798 -10.8636 -4.2370 18 6 -0.4805 -10.9065 -6.1523 19 7 -0.6099 -10.2759 -7.3004 20 14 -1.1434 -12.6422 -5.9602 21 1 -2.1620 -12.6665 -4.8800 22 1 -1.7652 -13.0787 -7.2361 23 1 -0.0303 -13.5614 -5.6116 24 6 2.4006 -7.6025 -5.2366 25 6 3.5448 -7.0130 -4.4058 26 6 2.6112 -4.6996 -0.8126 27 6 2.1545 -3.9213 0.2312 28 7 1.9760 -2.6229 0.0824 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 2.8714 -2.2155 -3.1005 37 1 2.4190 -7.5383 -1.8467 38 1 1.5638 -5.9752 -1.7983 39 1 0.3242 -6.5424 -3.8420 40 1 0.1229 -7.8595 -2.6609 41 1 1.9574 -9.1205 -3.7734 42 1 -0.1109 -8.0054 -6.9318 43 1 -1.5179 -8.4967 -5.9588 44 1 -0.5593 -7.0745 -5.4825 45 1 -1.0497 -10.7124 -8.0466 46 1 1.8763 -6.7997 -5.7548 47 1 2.8048 -8.3041 -5.9662 48 1 4.1873 -6.4084 -5.0459 49 1 4.1277 -7.8187 -3.9594 50 1 2.7590 -5.7612 -0.6796 51 1 1.9444 -4.3814 1.1855 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985744509.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:18 Heat of formation + Delta-G solvation = -20.273389 kcal Electronic energy + Delta-G solvation = -30945.423168 eV Core-core repulsion = 26845.697268 eV Total energy + Delta-G solvation = -4099.725900 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.15896 -41.04183 -39.27520 -38.84668 -36.78886 -34.46547 -34.18839 -33.59650 -32.05924 -31.49485 -31.04315 -28.16207 -28.02524 -27.12530 -25.57879 -24.79521 -23.90615 -23.76056 -22.48877 -21.31865 -20.32718 -19.28013 -18.76500 -18.35099 -17.45952 -17.06751 -16.93550 -16.83689 -16.70452 -16.27362 -15.74503 -15.51703 -15.37717 -15.09901 -15.00255 -14.85948 -14.66848 -14.49587 -14.15546 -13.94591 -13.80598 -13.39942 -13.27000 -13.18950 -13.10685 -12.89369 -12.86846 -12.73985 -12.54605 -12.36588 -12.26429 -12.09701 -11.91732 -11.84373 -11.77059 -11.62135 -11.41066 -11.20791 -10.98738 -10.63243 -10.53019 -9.76690 -9.52907 -8.73778 -7.80826 -5.29297 -0.35808 0.07196 1.48316 1.50697 1.51092 1.56993 1.77563 2.09230 2.52708 2.68622 3.15753 3.31014 3.32484 3.61418 3.82534 3.86812 3.88070 3.98488 4.03955 4.05536 4.09637 4.16889 4.28886 4.29618 4.37964 4.55117 4.58751 4.65553 4.70192 4.71296 4.76962 4.81313 4.84058 4.85648 4.89485 4.90434 4.95301 4.99747 5.09693 5.20451 5.21012 5.26763 5.31638 5.38567 5.49053 5.57325 5.67781 5.68587 6.21767 6.25606 6.36176 6.73193 6.91245 7.16514 7.89742 8.36151 9.22626 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018876 B = 0.002192 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.002771 B =12769.426082 C =13211.497396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.074 3.926 3 C -0.148 4.148 4 O -0.317 6.317 5 C 0.316 3.684 6 C -0.160 4.160 7 C -0.054 4.054 8 C 0.556 3.444 9 O -0.575 6.575 10 N -0.592 5.592 11 C 0.096 3.904 12 C -0.137 4.137 13 C 0.172 3.828 14 N -0.609 5.609 15 C 0.180 3.820 16 C -0.259 4.259 17 H 0.077 0.923 18 C -0.057 4.057 19 N -0.940 5.940 20 Si 0.967 3.033 21 H -0.278 1.278 22 H -0.301 1.301 23 H -0.273 1.273 24 C -0.133 4.133 25 C 0.123 3.877 26 C -0.179 4.179 27 C 0.147 3.853 28 N -0.532 5.532 29 H 0.092 0.908 30 H 0.058 0.942 31 H 0.048 0.952 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.133 0.867 37 H 0.108 0.892 38 H 0.118 0.882 39 H 0.045 0.955 40 H 0.082 0.918 41 H 0.071 0.929 42 H -0.005 1.005 43 H 0.013 0.987 44 H 0.025 0.975 45 H 0.246 0.754 46 H 0.037 0.963 47 H 0.054 0.946 48 H 0.077 0.923 49 H 0.095 0.905 50 H 0.181 0.819 51 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.500 17.193 21.369 27.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.019 3.981 3 C -0.205 4.205 4 O -0.225 6.225 5 C 0.138 3.862 6 C -0.182 4.182 7 C -0.065 4.065 8 C 0.345 3.655 9 O -0.455 6.455 10 N -0.323 5.323 11 C -0.026 4.026 12 C -0.177 4.177 13 C 0.066 3.934 14 N -0.331 5.331 15 C 0.035 3.965 16 C -0.389 4.389 17 H 0.095 0.905 18 C -0.252 4.252 19 N -0.587 5.587 20 Si 0.796 3.204 21 H -0.204 1.204 22 H -0.228 1.228 23 H -0.199 1.199 24 C -0.174 4.174 25 C 0.001 3.999 26 C -0.199 4.199 27 C -0.008 4.008 28 N -0.257 5.257 29 H 0.111 0.889 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.107 0.893 33 H 0.119 0.881 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.151 0.849 37 H 0.126 0.874 38 H 0.136 0.864 39 H 0.063 0.937 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.013 0.987 43 H 0.032 0.968 44 H 0.043 0.957 45 H 0.055 0.945 46 H 0.055 0.945 47 H 0.073 0.927 48 H 0.095 0.905 49 H 0.113 0.887 50 H 0.198 0.802 51 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 5.546 18.064 21.258 28.443 hybrid contribution -0.339 -1.384 -1.787 2.286 sum 5.207 16.680 19.471 26.162 Atomic orbital electron populations 1.22199 0.94143 1.02323 1.03542 1.22621 0.95029 0.93535 0.86937 1.21934 1.01810 0.92686 1.04058 1.86308 1.80178 1.15693 1.40280 1.19601 0.92011 0.85159 0.89468 1.21024 1.04377 0.93174 0.99645 1.19983 0.98555 0.92959 0.94993 1.18513 0.80732 0.81579 0.84689 1.90757 1.38304 1.71069 1.45367 1.48099 1.40722 1.10570 1.32907 1.22731 0.87841 0.99984 0.92013 1.22394 0.98252 0.98721 0.98327 1.20573 0.87839 0.93926 0.91090 1.44180 1.33053 1.03056 1.52785 1.20383 0.92965 0.90560 0.92614 1.19545 1.34694 0.84402 1.00285 0.90546 1.25838 1.03131 1.01584 0.94646 1.70246 1.47475 1.39110 1.01831 0.85337 0.78541 0.80356 0.76189 1.20359 1.22759 1.19868 1.22304 0.97117 0.99051 0.98903 1.21611 0.95182 0.93951 0.89177 1.22746 1.01711 1.03660 0.91760 1.23141 0.91202 0.86513 0.99959 1.67237 1.20758 1.14040 1.23637 0.88889 0.92301 0.93306 0.89298 0.88136 0.92159 0.91800 0.84878 0.87367 0.86448 0.93667 0.89900 0.91081 0.98690 0.96786 0.95688 0.94508 0.94452 0.92683 0.90482 0.88708 0.80164 0.77384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 9.53 71.98 0.69 -1.63 16 2 C 0.07 1.19 3.11 30.59 0.10 1.28 16 3 C -0.15 -1.71 9.56 71.98 0.69 -1.02 16 4 O -0.32 -7.11 9.76 -90.04 -0.88 -7.99 16 5 C 0.32 7.23 7.45 84.80 0.63 7.86 16 6 C -0.16 -4.04 9.64 22.75 0.22 -3.82 16 7 C -0.05 -1.25 5.39 -19.90 -0.11 -1.36 16 8 C 0.56 15.95 7.46 86.88 0.65 16.60 16 9 O -0.57 -21.00 16.27 -3.75 -0.06 -21.07 16 10 N -0.59 -15.20 2.97 -821.11 -2.44 -17.63 16 11 C 0.10 1.90 4.82 86.51 0.42 2.32 16 12 C -0.14 -3.92 5.33 30.81 0.16 -3.75 16 13 C 0.17 6.30 2.55 45.02 0.11 6.42 16 14 N -0.61 -29.23 2.80 -702.63 -1.97 -31.20 16 15 C 0.18 8.96 8.07 127.77 1.03 10.00 16 16 C -0.26 -13.65 9.55 84.04 0.80 -12.85 16 17 H 0.08 3.81 7.85 -2.91 -0.02 3.78 16 18 C -0.06 -3.15 5.02 84.86 0.43 -2.72 16 19 N -0.94 -55.96 10.96 21.65 0.24 -55.72 16 20 Si 0.97 44.29 29.58 68.60 2.03 46.31 16 21 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 22 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 24 C -0.13 -4.77 5.34 30.67 0.16 -4.61 16 25 C 0.12 3.51 6.44 86.37 0.56 4.06 16 26 C -0.18 -2.67 7.48 22.63 0.17 -2.50 16 27 C 0.15 1.94 11.17 84.62 0.94 2.88 16 28 N -0.53 -10.02 8.61 -309.14 -2.66 -12.68 16 29 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.09 1.42 6.97 -2.39 -0.02 1.41 16 33 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 35 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.13 3.66 8.03 -2.91 -0.02 3.64 16 37 H 0.11 1.53 8.06 -2.39 -0.02 1.51 16 38 H 0.12 1.85 4.26 -2.39 -0.01 1.84 16 39 H 0.04 1.45 6.72 -2.39 -0.02 1.44 16 40 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 41 H 0.07 2.50 7.87 -2.39 -0.02 2.48 16 42 H -0.01 -0.29 7.45 -2.39 -0.02 -0.31 16 43 H 0.01 0.73 7.34 -2.39 -0.02 0.71 16 44 H 0.02 1.08 6.46 -2.39 -0.02 1.07 16 45 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 46 H 0.04 1.48 7.72 -2.39 -0.02 1.46 16 47 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 48 H 0.08 2.40 7.00 -2.39 -0.02 2.38 16 49 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 50 H 0.18 1.66 5.85 -2.91 -0.02 1.64 16 51 H 0.21 0.93 8.06 -2.91 -0.02 0.91 16 Total: -1.00 -73.03 401.42 2.83 -70.20 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: 0.92 Total: 12.62 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: 7.65 Total: 17.16 kcal Atomic # 7 Polarization: -110.41 SS G_CDS: -6.83 Total: -117.23 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.94 Total: -29.06 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -73.03 2.83 -70.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985744509.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.927 kcal (2) G-P(sol) polarization free energy of solvation -73.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds