Wall clock time and date at job start Wed Apr 1 2020 04:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47311 * 2 1 4 4 O 1.42902 * 109.47141 * 239.99998 * 2 1 3 5 5 C 1.35719 * 117.00547 * 271.05569 * 4 2 1 6 6 C 1.39230 * 120.37825 * 7.71985 * 5 4 2 7 7 C 1.38327 * 118.44661 * 179.76140 * 6 5 4 8 8 C 1.39471 * 119.12812 * 0.53244 * 7 6 5 9 9 C 1.47926 * 119.65513 * 179.72975 * 8 7 6 10 10 O 1.21548 * 120.00232 * 26.06803 * 9 8 7 11 11 N 1.34779 * 119.99722 * 206.07690 * 9 8 7 12 12 C 1.46918 * 120.63084 * 356.88406 * 11 9 8 13 13 C 1.53628 * 108.54462 * 126.37351 * 12 11 9 14 14 C 1.53034 * 109.24009 * 54.85580 * 13 12 11 15 15 N 1.46510 * 109.44735 * 178.50095 * 14 13 12 16 16 C 1.46500 * 119.99788 * 60.05724 * 15 14 13 17 17 C 1.36932 * 119.99656 * 240.06074 * 15 14 13 18 18 H 1.07994 * 120.00552 * 29.13420 * 17 15 14 19 19 C 1.38809 * 119.99697 * 209.12931 * 17 15 14 20 20 N 1.31623 * 120.00151 * 7.30553 * 19 17 15 21 21 Si 1.86799 * 120.00367 * 187.30104 * 19 17 15 22 22 H 1.48504 * 109.47073 * 59.99664 * 21 19 17 23 23 H 1.48494 * 109.47486 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47226 * 300.00320 * 21 19 17 25 25 C 1.53041 * 109.54052 * 298.50786 * 14 13 12 26 26 C 1.46931 * 120.62802 * 177.16891 * 11 9 8 27 27 N 1.32797 * 120.68656 * 359.70482 * 8 7 6 28 28 C 1.31380 * 121.69273 * 0.02562 * 27 8 7 29 29 H 1.08999 * 109.47339 * 59.99781 * 1 2 3 30 30 H 1.09003 * 109.47407 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47092 * 299.99691 * 1 2 3 32 32 H 1.08999 * 109.47339 * 120.00219 * 2 1 3 33 33 H 1.09000 * 109.46790 * 60.00125 * 3 2 1 34 34 H 1.08997 * 109.47343 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.47098 * 300.00366 * 3 2 1 36 36 H 1.08003 * 120.77702 * 0.02562 * 6 5 4 37 37 H 1.08000 * 120.43454 * 180.26317 * 7 6 5 38 38 H 1.09005 * 109.58920 * 246.20473 * 12 11 9 39 39 H 1.08996 * 109.59045 * 6.62507 * 12 11 9 40 40 H 1.09000 * 109.63010 * 294.85975 * 13 12 11 41 41 H 1.09001 * 109.42878 * 174.72272 * 13 12 11 42 42 H 1.08996 * 109.46327 * 58.53417 * 14 13 12 43 43 H 1.08999 * 109.46836 * 94.41155 * 16 15 14 44 44 H 1.09005 * 109.46756 * 214.40910 * 16 15 14 45 45 H 1.08998 * 109.47176 * 334.40995 * 16 15 14 46 46 H 0.97003 * 119.99955 * 180.02562 * 20 19 17 47 47 H 1.08999 * 109.49874 * 301.42003 * 25 14 13 48 48 H 1.08996 * 109.50106 * 181.31761 * 25 14 13 49 49 H 1.08996 * 109.58392 * 353.36249 * 26 11 9 50 50 H 1.08994 * 109.58924 * 113.65323 * 26 11 9 51 51 H 1.08002 * 119.59564 * 179.97438 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.1907 -2.0149 -1.0719 6 6 1.7714 -2.7048 0.0625 7 6 1.9747 -4.0720 0.1149 8 6 2.5989 -4.7072 -0.9585 9 6 2.8276 -6.1679 -0.9122 10 8 2.1057 -6.8750 -0.2366 11 7 3.8366 -6.7148 -1.6189 12 6 4.6751 -5.8831 -2.4929 13 6 6.1470 -6.1043 -2.1125 14 6 6.4647 -7.6000 -2.1749 15 7 7.8769 -7.8127 -1.8477 16 6 8.3975 -7.3951 -0.5436 17 6 8.7100 -8.4019 -2.7609 18 1 8.5177 -8.2908 -3.8178 19 6 9.8017 -9.1419 -2.3281 20 7 9.9565 -9.3985 -1.0465 21 14 11.0513 -9.7736 -3.5646 22 1 11.6587 -8.6258 -4.2850 23 1 12.1129 -10.5300 -2.8532 24 1 10.3753 -10.6677 -4.5388 25 6 5.5896 -8.3516 -1.1693 26 6 4.1149 -8.1550 -1.5347 27 7 2.9896 -4.0143 -2.0219 28 6 2.8066 -2.7160 -2.1052 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6766 1.9562 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.2946 -2.1852 0.8805 37 1 1.6582 -4.6395 0.9775 38 1 4.5164 -6.1700 -3.5324 39 1 4.4150 -4.8333 -2.3577 40 1 6.3232 -5.7367 -1.1016 41 1 6.7870 -5.5669 -2.8123 42 1 6.2647 -7.9721 -3.1797 43 1 8.3701 -8.2390 0.1457 44 1 9.4257 -7.0511 -0.6562 45 1 7.7842 -6.5845 -0.1502 46 1 10.7196 -9.9154 -0.7440 47 1 5.7711 -7.9629 -0.1672 48 1 5.8329 -9.4137 -1.1976 49 1 3.4852 -8.6045 -0.7669 50 1 3.9091 -8.6238 -2.4969 51 1 3.1382 -2.1860 -2.9859 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985818428.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:37 Heat of formation + Delta-G solvation = 1.417612 kcal Electronic energy + Delta-G solvation = -30939.353527 eV Core-core repulsion = 26840.568220 eV Total energy + Delta-G solvation = -4098.785308 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.31522 -39.96819 -38.55092 -37.35700 -34.99914 -33.88493 -32.78388 -32.06509 -31.10317 -30.13685 -29.52945 -27.85895 -25.93439 -25.53968 -24.42423 -23.88174 -22.63379 -22.24059 -21.50600 -20.23449 -18.91665 -18.61338 -17.51940 -16.98889 -16.68999 -16.08770 -15.99227 -15.29235 -15.10970 -14.96207 -14.93512 -14.48720 -14.02876 -13.88757 -13.83600 -13.47813 -13.42198 -13.21612 -13.02380 -12.89501 -12.80900 -12.73642 -12.42126 -12.18986 -12.01594 -11.60582 -11.52794 -11.38008 -11.25018 -10.83830 -10.77208 -10.74415 -10.38401 -10.26021 -10.20152 -10.14191 -10.01860 -9.82738 -9.60755 -9.12298 -8.79939 -8.49981 -8.31199 -6.59862 -5.66827 -3.19316 0.51469 0.81973 2.53709 2.70159 3.12312 3.41105 3.46139 3.46896 3.56230 4.04243 4.11702 4.25329 4.30171 4.39649 4.52155 4.52913 4.63787 4.77307 4.98757 5.08798 5.14815 5.20923 5.33534 5.39571 5.39964 5.48749 5.51617 5.56414 5.60674 5.63941 5.65535 5.69612 5.81620 5.87172 5.96881 6.08783 6.27062 6.38667 6.48163 6.51242 6.64431 6.72648 6.80417 6.88925 7.09703 7.12131 7.41957 7.42373 7.63380 7.81473 7.84755 8.25650 8.49718 9.30409 9.92563 10.45743 11.36744 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018115 B = 0.002227 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.281566 B =12572.383022 C =13383.011757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.073 3.927 3 C -0.150 4.150 4 O -0.300 6.300 5 C 0.103 3.897 6 C -0.176 4.176 7 C -0.069 4.069 8 C 0.046 3.954 9 C 0.571 3.429 10 O -0.547 6.547 11 N -0.582 5.582 12 C 0.082 3.918 13 C -0.147 4.147 14 C 0.178 3.822 15 N -0.595 5.595 16 C 0.163 3.837 17 C -0.255 4.255 18 H 0.064 0.936 19 C 0.005 3.995 20 N -0.906 5.906 21 Si 0.904 3.096 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.283 1.283 25 C -0.142 4.142 26 C 0.111 3.889 27 N -0.407 5.407 28 C 0.069 3.931 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.146 0.854 37 H 0.149 0.851 38 H 0.066 0.934 39 H 0.129 0.871 40 H 0.057 0.943 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.030 0.970 44 H 0.035 0.965 45 H -0.003 1.003 46 H 0.252 0.748 47 H 0.058 0.942 48 H 0.076 0.924 49 H 0.085 0.915 50 H 0.067 0.933 51 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.276 20.465 2.589 28.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.017 3.983 3 C -0.207 4.207 4 O -0.212 6.212 5 C 0.054 3.946 6 C -0.202 4.202 7 C -0.090 4.090 8 C -0.091 4.091 9 C 0.358 3.642 10 O -0.426 6.426 11 N -0.313 5.313 12 C -0.041 4.041 13 C -0.187 4.187 14 C 0.070 3.930 15 N -0.317 5.317 16 C 0.018 3.982 17 C -0.385 4.385 18 H 0.082 0.918 19 C -0.194 4.194 20 N -0.551 5.551 21 Si 0.734 3.266 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.209 1.209 25 C -0.183 4.183 26 C -0.011 4.011 27 N -0.119 5.119 28 C -0.092 4.092 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.164 0.836 37 H 0.167 0.833 38 H 0.084 0.916 39 H 0.146 0.854 40 H 0.075 0.925 41 H 0.089 0.911 42 H 0.080 0.920 43 H 0.048 0.952 44 H 0.054 0.946 45 H 0.015 0.985 46 H 0.062 0.938 47 H 0.076 0.924 48 H 0.094 0.906 49 H 0.103 0.897 50 H 0.085 0.915 51 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -19.040 19.646 2.215 27.449 hybrid contribution 0.405 -0.033 0.329 0.523 sum -18.635 19.614 2.544 27.174 Atomic orbital electron populations 1.22373 0.94598 1.03250 1.03513 1.22584 0.94639 0.93980 0.87137 1.21884 1.02387 0.93176 1.03296 1.86124 1.80397 1.16502 1.38159 1.20394 0.94861 0.84058 0.95297 1.21719 1.04528 0.94980 0.98973 1.21888 0.94415 0.93786 0.98908 1.21098 1.00997 0.94765 0.92276 1.17740 0.81050 0.85690 0.79755 1.90764 1.47292 1.61573 1.42939 1.48038 1.30414 1.09504 1.43315 1.22883 0.89901 0.98303 0.92998 1.22565 0.94302 1.00194 1.01641 1.20348 0.84958 0.91318 0.96422 1.43883 1.02788 1.69644 1.15372 1.20735 0.95651 0.94860 0.86930 1.19127 1.06031 1.25032 0.88334 0.91797 1.25198 1.00374 0.97832 0.95977 1.70021 1.30134 1.42024 1.12893 0.86356 0.81046 0.78676 0.80532 1.21079 1.21706 1.20913 1.22486 0.92470 1.02341 1.00975 1.21781 0.97815 0.79401 1.02096 1.67724 1.13468 1.06917 1.23780 1.22430 0.98864 0.89459 0.98407 0.91141 0.91819 0.90687 0.90545 0.90318 0.91390 0.91243 0.83608 0.83335 0.91601 0.85427 0.92452 0.91063 0.91956 0.95186 0.94575 0.98456 0.93754 0.92356 0.90570 0.89689 0.91488 0.81133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.82 9.27 37.15 0.34 -0.47 16 2 C 0.07 0.40 2.83 -26.74 -0.08 0.32 16 3 C -0.15 -0.63 9.56 37.16 0.36 -0.28 16 4 O -0.30 -2.44 9.79 -18.86 -0.18 -2.62 16 5 C 0.10 0.94 6.66 -38.84 -0.26 0.68 16 6 C -0.18 -1.53 8.49 -39.18 -0.33 -1.86 16 7 C -0.07 -0.77 9.62 -39.09 -0.38 -1.14 16 8 C 0.05 0.62 6.40 -83.02 -0.53 0.08 16 9 C 0.57 9.29 7.57 -12.29 -0.09 9.19 16 10 O -0.55 -10.10 16.03 5.32 0.09 -10.02 16 11 N -0.58 -9.39 2.97 -173.58 -0.51 -9.90 16 12 C 0.08 1.23 6.06 -3.49 -0.02 1.21 16 13 C -0.15 -2.58 5.34 -26.39 -0.14 -2.73 16 14 C 0.18 3.66 2.55 -67.89 -0.17 3.48 16 15 N -0.60 -14.97 2.79 -173.44 -0.48 -15.46 16 16 C 0.16 4.08 8.05 59.85 0.48 4.57 16 17 C -0.26 -7.03 9.52 -15.06 -0.14 -7.18 16 18 H 0.06 1.72 7.84 -52.49 -0.41 1.31 16 19 C 0.00 0.14 5.21 -17.43 -0.09 0.05 16 20 N -0.91 -26.68 10.80 55.49 0.60 -26.08 16 21 Si 0.90 21.98 29.56 -169.99 -5.02 16.95 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 C -0.14 -2.72 5.34 -26.61 -0.14 -2.87 16 26 C 0.11 1.84 6.42 -3.70 -0.02 1.82 16 27 N -0.41 -5.04 6.46 -9.68 -0.06 -5.10 16 28 C 0.07 0.70 11.14 -17.38 -0.19 0.50 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.33 7.23 -51.93 -0.38 -0.05 16 31 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.08 0.37 6.20 -51.93 -0.32 0.05 16 33 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.15 0.87 5.67 -52.48 -0.30 0.58 16 37 H 0.15 1.53 7.85 -52.49 -0.41 1.12 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.13 1.80 3.99 -75.89 -0.30 1.50 16 40 H 0.06 1.06 6.72 -51.93 -0.35 0.72 16 41 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.06 1.30 7.89 -51.93 -0.41 0.89 16 43 H 0.03 0.82 7.27 -51.93 -0.38 0.44 16 44 H 0.04 0.96 7.55 -51.93 -0.39 0.57 16 45 H 0.00 -0.07 6.46 -51.93 -0.34 -0.40 16 46 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 47 H 0.06 1.18 7.72 -51.93 -0.40 0.78 16 48 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 49 H 0.08 1.42 7.02 -51.93 -0.36 1.06 16 50 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 51 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 398.79 15.07 6.01 6.01 Total: -1.00 -32.55 398.79 -9.11 -41.66 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -8.11 Total: -0.82 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: -1.41 Total: 5.38 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: -0.46 Total: -56.54 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -0.10 Total: -12.64 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.55 -9.11 -41.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985818428.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.078 kcal (2) G-P(sol) polarization free energy of solvation -32.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds