Wall clock time and date at job start Wed Apr 1 2020 04:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47311 * 2 1 4 4 O 1.42902 * 109.47141 * 239.99998 * 2 1 3 5 5 C 1.35719 * 117.00547 * 271.05569 * 4 2 1 6 6 C 1.39230 * 120.37825 * 7.71985 * 5 4 2 7 7 C 1.38327 * 118.44661 * 179.76140 * 6 5 4 8 8 C 1.39471 * 119.12812 * 0.53244 * 7 6 5 9 9 C 1.47926 * 119.65513 * 179.72975 * 8 7 6 10 10 O 1.21548 * 120.00232 * 26.06803 * 9 8 7 11 11 N 1.34779 * 119.99722 * 206.07690 * 9 8 7 12 12 C 1.46918 * 120.63084 * 356.88406 * 11 9 8 13 13 C 1.53628 * 108.54462 * 126.37351 * 12 11 9 14 14 C 1.53034 * 109.24009 * 54.85580 * 13 12 11 15 15 N 1.46510 * 109.44735 * 178.50095 * 14 13 12 16 16 C 1.46500 * 119.99788 * 60.05724 * 15 14 13 17 17 C 1.36932 * 119.99656 * 240.06074 * 15 14 13 18 18 H 1.07994 * 120.00552 * 29.13420 * 17 15 14 19 19 C 1.38809 * 119.99697 * 209.12931 * 17 15 14 20 20 N 1.31623 * 120.00151 * 7.30553 * 19 17 15 21 21 Si 1.86799 * 120.00367 * 187.30104 * 19 17 15 22 22 H 1.48504 * 109.47073 * 59.99664 * 21 19 17 23 23 H 1.48494 * 109.47486 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47226 * 300.00320 * 21 19 17 25 25 C 1.53041 * 109.54052 * 298.50786 * 14 13 12 26 26 C 1.46931 * 120.62802 * 177.16891 * 11 9 8 27 27 N 1.32797 * 120.68656 * 359.70482 * 8 7 6 28 28 C 1.31380 * 121.69273 * 0.02562 * 27 8 7 29 29 H 1.08999 * 109.47339 * 59.99781 * 1 2 3 30 30 H 1.09003 * 109.47407 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47092 * 299.99691 * 1 2 3 32 32 H 1.08999 * 109.47339 * 120.00219 * 2 1 3 33 33 H 1.09000 * 109.46790 * 60.00125 * 3 2 1 34 34 H 1.08997 * 109.47343 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.47098 * 300.00366 * 3 2 1 36 36 H 1.08003 * 120.77702 * 0.02562 * 6 5 4 37 37 H 1.08000 * 120.43454 * 180.26317 * 7 6 5 38 38 H 1.09005 * 109.58920 * 246.20473 * 12 11 9 39 39 H 1.08996 * 109.59045 * 6.62507 * 12 11 9 40 40 H 1.09000 * 109.63010 * 294.85975 * 13 12 11 41 41 H 1.09001 * 109.42878 * 174.72272 * 13 12 11 42 42 H 1.08996 * 109.46327 * 58.53417 * 14 13 12 43 43 H 1.08999 * 109.46836 * 94.41155 * 16 15 14 44 44 H 1.09005 * 109.46756 * 214.40910 * 16 15 14 45 45 H 1.08998 * 109.47176 * 334.40995 * 16 15 14 46 46 H 0.97003 * 119.99955 * 180.02562 * 20 19 17 47 47 H 1.08999 * 109.49874 * 301.42003 * 25 14 13 48 48 H 1.08996 * 109.50106 * 181.31761 * 25 14 13 49 49 H 1.08996 * 109.58392 * 353.36249 * 26 11 9 50 50 H 1.08994 * 109.58924 * 113.65323 * 26 11 9 51 51 H 1.08002 * 119.59564 * 179.97438 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.1907 -2.0149 -1.0719 6 6 1.7714 -2.7048 0.0625 7 6 1.9747 -4.0720 0.1149 8 6 2.5989 -4.7072 -0.9585 9 6 2.8276 -6.1679 -0.9122 10 8 2.1057 -6.8750 -0.2366 11 7 3.8366 -6.7148 -1.6189 12 6 4.6751 -5.8831 -2.4929 13 6 6.1470 -6.1043 -2.1125 14 6 6.4647 -7.6000 -2.1749 15 7 7.8769 -7.8127 -1.8477 16 6 8.3975 -7.3951 -0.5436 17 6 8.7100 -8.4019 -2.7609 18 1 8.5177 -8.2908 -3.8178 19 6 9.8017 -9.1419 -2.3281 20 7 9.9565 -9.3985 -1.0465 21 14 11.0513 -9.7736 -3.5646 22 1 11.6587 -8.6258 -4.2850 23 1 12.1129 -10.5300 -2.8532 24 1 10.3753 -10.6677 -4.5388 25 6 5.5896 -8.3516 -1.1693 26 6 4.1149 -8.1550 -1.5347 27 7 2.9896 -4.0143 -2.0219 28 6 2.8066 -2.7160 -2.1052 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6766 1.9562 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.2946 -2.1852 0.8805 37 1 1.6582 -4.6395 0.9775 38 1 4.5164 -6.1700 -3.5324 39 1 4.4150 -4.8333 -2.3577 40 1 6.3232 -5.7367 -1.1016 41 1 6.7870 -5.5669 -2.8123 42 1 6.2647 -7.9721 -3.1797 43 1 8.3701 -8.2390 0.1457 44 1 9.4257 -7.0511 -0.6562 45 1 7.7842 -6.5845 -0.1502 46 1 10.7196 -9.9154 -0.7440 47 1 5.7711 -7.9629 -0.1672 48 1 5.8329 -9.4137 -1.1976 49 1 3.4852 -8.6045 -0.7669 50 1 3.9091 -8.6238 -2.4969 51 1 3.1382 -2.1860 -2.9859 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985818428.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:36 Heat of formation + Delta-G solvation = -17.187756 kcal Electronic energy + Delta-G solvation = -30940.160317 eV Core-core repulsion = 26840.568220 eV Total energy + Delta-G solvation = -4099.592097 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.17447 -40.99648 -39.47697 -38.81190 -36.71230 -34.40963 -33.98932 -33.41890 -32.35151 -31.53290 -30.96002 -28.18430 -28.01424 -26.83182 -25.47951 -24.93705 -23.99552 -23.62976 -22.33215 -21.48364 -20.20844 -19.39231 -18.75211 -18.58125 -17.94434 -17.24110 -16.86160 -16.68237 -16.29294 -16.02918 -15.82072 -15.65552 -15.17918 -15.14957 -15.10191 -14.79265 -14.66432 -14.33308 -14.25362 -13.99345 -13.75350 -13.47477 -13.41439 -13.17646 -13.06336 -12.94668 -12.81111 -12.72535 -12.61966 -12.35804 -12.24895 -12.07812 -11.97130 -11.86071 -11.73715 -11.59638 -11.37921 -11.25880 -10.91835 -10.64530 -10.19984 -9.77312 -9.45729 -8.66328 -7.79620 -5.35085 -0.35751 0.06121 1.47320 1.49445 1.55891 1.58611 1.85998 2.05086 2.51414 2.65218 3.07457 3.32850 3.47912 3.59372 3.64287 3.75034 3.83514 3.96282 3.97132 4.00605 4.15052 4.18777 4.23363 4.34321 4.40344 4.58198 4.61749 4.69500 4.72869 4.77211 4.79224 4.82861 4.85701 4.89231 4.91423 4.92105 5.01309 5.06061 5.10194 5.22694 5.25226 5.29399 5.31159 5.42374 5.50235 5.65427 5.67712 5.73176 6.15500 6.34095 6.39016 6.61163 7.03459 7.18329 7.89107 8.37444 9.22183 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018115 B = 0.002227 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.281566 B =12572.383022 C =13383.011757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.063 3.937 3 C -0.149 4.149 4 O -0.305 6.305 5 C 0.114 3.886 6 C -0.167 4.167 7 C -0.070 4.070 8 C 0.017 3.983 9 C 0.569 3.431 10 O -0.577 6.577 11 N -0.588 5.588 12 C 0.091 3.909 13 C -0.133 4.133 14 C 0.173 3.827 15 N -0.610 5.610 16 C 0.182 3.818 17 C -0.263 4.263 18 H 0.070 0.930 19 C -0.052 4.052 20 N -0.939 5.939 21 Si 0.970 3.030 22 H -0.277 1.277 23 H -0.297 1.297 24 H -0.274 1.274 25 C -0.129 4.129 26 C 0.121 3.879 27 N -0.420 5.420 28 C 0.066 3.934 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.175 0.825 37 H 0.151 0.849 38 H 0.078 0.922 39 H 0.145 0.855 40 H 0.046 0.954 41 H 0.072 0.928 42 H 0.061 0.939 43 H 0.001 0.999 44 H 0.011 0.989 45 H 0.023 0.977 46 H 0.247 0.753 47 H 0.042 0.958 48 H 0.056 0.944 49 H 0.082 0.918 50 H 0.082 0.918 51 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.727 23.009 1.828 31.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.008 3.992 3 C -0.206 4.206 4 O -0.217 6.217 5 C 0.064 3.936 6 C -0.193 4.193 7 C -0.091 4.091 8 C -0.119 4.119 9 C 0.357 3.643 10 O -0.458 6.458 11 N -0.318 5.318 12 C -0.031 4.031 13 C -0.173 4.173 14 C 0.066 3.934 15 N -0.333 5.333 16 C 0.037 3.963 17 C -0.394 4.394 18 H 0.087 0.913 19 C -0.247 4.247 20 N -0.585 5.585 21 Si 0.798 3.202 22 H -0.203 1.203 23 H -0.223 1.223 24 H -0.200 1.200 25 C -0.169 4.169 26 C -0.002 4.002 27 N -0.133 5.133 28 C -0.096 4.096 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.112 0.888 32 H 0.104 0.896 33 H 0.116 0.884 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.193 0.807 37 H 0.169 0.831 38 H 0.096 0.904 39 H 0.162 0.838 40 H 0.065 0.935 41 H 0.091 0.909 42 H 0.079 0.921 43 H 0.019 0.981 44 H 0.030 0.970 45 H 0.041 0.959 46 H 0.056 0.944 47 H 0.061 0.939 48 H 0.074 0.926 49 H 0.100 0.900 50 H 0.101 0.899 51 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -20.526 22.218 1.435 30.282 hybrid contribution 0.751 -0.637 0.582 1.144 sum -19.775 21.582 2.017 29.341 Atomic orbital electron populations 1.22373 0.93721 1.03124 1.04321 1.22899 0.95379 0.94453 0.86502 1.21916 1.02037 0.92456 1.04207 1.86143 1.80093 1.15755 1.39686 1.20432 0.93576 0.84676 0.94895 1.21961 1.03708 0.93956 0.99626 1.21965 0.93989 0.94810 0.98348 1.20765 1.03801 0.93355 0.93962 1.18184 0.80368 0.86969 0.78770 1.90733 1.48267 1.62702 1.44056 1.48101 1.30775 1.09198 1.43686 1.22921 0.87646 0.99264 0.93241 1.22382 0.96326 0.97462 1.01114 1.20551 0.82794 0.93524 0.96504 1.44120 1.04615 1.69657 1.14867 1.20412 0.94776 0.94369 0.86791 1.19489 1.06412 1.24408 0.89051 0.91257 1.25984 1.02505 0.98564 0.97674 1.70205 1.30566 1.43056 1.14667 0.85308 0.78452 0.78135 0.78316 1.20261 1.22287 1.20020 1.22262 0.94273 1.00696 0.99706 1.21607 0.95462 0.80394 1.02755 1.67497 1.14239 1.08004 1.23539 1.22781 0.98597 0.88748 0.99451 0.91534 0.92376 0.88775 0.89573 0.88367 0.91966 0.91425 0.80734 0.83110 0.90419 0.83835 0.93507 0.90926 0.92053 0.98055 0.97043 0.95906 0.94374 0.93905 0.92551 0.89987 0.89932 0.78980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.08 9.27 71.98 0.67 -0.41 16 2 C 0.06 0.50 2.83 30.59 0.09 0.59 16 3 C -0.15 -0.85 9.56 71.98 0.69 -0.16 16 4 O -0.30 -4.08 9.79 -90.40 -0.88 -4.97 16 5 C 0.11 1.78 6.66 22.75 0.15 1.93 16 6 C -0.17 -2.47 8.49 22.53 0.19 -2.28 16 7 C -0.07 -1.45 9.62 22.59 0.22 -1.24 16 8 C 0.02 0.43 6.40 41.86 0.27 0.70 16 9 C 0.57 18.29 7.57 86.81 0.66 18.95 16 10 O -0.58 -21.41 16.03 -3.87 -0.06 -21.47 16 11 N -0.59 -18.58 2.97 -821.36 -2.44 -21.02 16 12 C 0.09 2.62 6.06 86.51 0.52 3.15 16 13 C -0.13 -4.57 5.34 30.82 0.16 -4.41 16 14 C 0.17 7.12 2.55 45.01 0.11 7.23 16 15 N -0.61 -31.15 2.79 -702.64 -1.96 -33.12 16 16 C 0.18 9.36 8.05 127.77 1.03 10.39 16 17 C -0.26 -14.61 9.52 84.03 0.80 -13.81 16 18 H 0.07 3.70 7.84 -2.91 -0.02 3.68 16 19 C -0.05 -2.96 5.21 84.86 0.44 -2.52 16 20 N -0.94 -56.79 10.80 21.65 0.23 -56.55 16 21 Si 0.97 45.57 29.56 68.60 2.03 47.60 16 22 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 23 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 24 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 25 C -0.13 -5.03 5.34 30.68 0.16 -4.87 16 26 C 0.12 3.97 6.42 86.36 0.55 4.52 16 27 N -0.42 -9.69 6.46 -184.52 -1.19 -10.88 16 28 C 0.07 1.17 11.14 85.00 0.95 2.11 16 29 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.06 0.43 7.23 -2.39 -0.02 0.41 16 31 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 32 H 0.09 0.54 6.20 -2.39 -0.01 0.52 16 33 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 34 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.18 1.48 5.67 -2.91 -0.02 1.46 16 37 H 0.15 2.97 7.85 -2.91 -0.02 2.95 16 38 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 39 H 0.15 3.81 3.99 -49.68 -0.20 3.61 16 40 H 0.05 1.70 6.72 -2.39 -0.02 1.69 16 41 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 42 H 0.06 2.53 7.89 -2.39 -0.02 2.51 16 43 H 0.00 0.07 7.27 -2.39 -0.02 0.05 16 44 H 0.01 0.61 7.55 -2.38 -0.02 0.59 16 45 H 0.02 1.03 6.46 -2.39 -0.02 1.01 16 46 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 47 H 0.04 1.78 7.72 -2.39 -0.02 1.76 16 48 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 49 H 0.08 2.77 7.02 -2.39 -0.02 2.76 16 50 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 51 H 0.19 2.43 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -71.40 398.79 4.13 -67.27 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 0.74 Total: 13.25 kcal Atomic # 6 Polarization: 12.22 SS G_CDS: 7.67 Total: 19.88 kcal Atomic # 7 Polarization: -116.21 SS G_CDS: -5.36 Total: -121.57 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.95 Total: -26.44 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -71.40 4.13 -67.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985818428.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.086 kcal (2) G-P(sol) polarization free energy of solvation -71.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds