Wall clock time and date at job start Wed Apr 1 2020 04:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46973 * 2 1 4 4 O 1.42895 * 109.47015 * 120.00005 * 2 1 3 5 5 C 1.35421 * 116.99991 * 90.00237 * 4 2 1 6 6 N 1.32236 * 119.80162 * 359.97438 * 5 4 2 7 7 C 1.31881 * 121.80189 * 180.02562 * 6 5 4 8 8 C 1.38354 * 121.18612 * 0.02562 * 7 6 5 9 9 C 1.38340 * 119.45954 * 0.02562 * 8 7 6 10 10 C 1.39988 * 118.34851 * 359.97438 * 9 8 7 11 11 C 1.47519 * 120.59676 * 180.02562 * 10 9 8 12 12 O 1.21588 * 120.00462 * 229.94353 * 11 10 9 13 13 N 1.34780 * 120.00144 * 49.94901 * 11 10 9 14 14 C 1.46931 * 120.62509 * 5.12219 * 13 11 10 15 15 C 1.53619 * 108.54491 * 126.37047 * 14 13 11 16 16 C 1.53039 * 109.24371 * 54.85005 * 15 14 13 17 17 N 1.46495 * 109.45046 * 178.49679 * 16 15 14 18 18 C 1.46502 * 119.99899 * 60.06877 * 17 16 15 19 19 C 1.36939 * 120.00556 * 240.06315 * 17 16 15 20 20 H 1.08001 * 119.99408 * 19.42306 * 19 17 16 21 21 C 1.38810 * 120.00263 * 199.42690 * 19 17 16 22 22 N 1.31615 * 120.00247 * 15.95662 * 21 19 17 23 23 Si 1.86797 * 119.99777 * 195.95540 * 21 19 17 24 24 H 1.48502 * 109.47060 * 94.97414 * 23 21 19 25 25 H 1.48501 * 109.47116 * 214.97209 * 23 21 19 26 26 H 1.48501 * 109.47460 * 334.97647 * 23 21 19 27 27 C 1.53042 * 109.53933 * 298.51481 * 16 15 14 28 28 C 1.46924 * 120.63586 * 185.39784 * 13 11 10 29 29 H 1.09001 * 109.47190 * 59.99885 * 1 2 3 30 30 H 1.08998 * 109.46829 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46955 * 299.99949 * 1 2 3 32 32 H 1.08999 * 109.46955 * 240.00050 * 2 1 3 33 33 H 1.08998 * 109.47263 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47257 * 300.00074 * 3 2 1 35 35 H 1.09007 * 109.47305 * 59.99884 * 3 2 1 36 36 H 1.08000 * 119.40773 * 179.71786 * 7 6 5 37 37 H 1.08002 * 120.27316 * 180.02562 * 8 7 6 38 38 H 1.08001 * 120.82502 * 179.97438 * 9 8 7 39 39 H 1.09000 * 109.58267 * 246.20189 * 14 13 11 40 40 H 1.09002 * 109.58947 * 6.62211 * 14 13 11 41 41 H 1.09000 * 109.63403 * 294.86514 * 15 14 13 42 42 H 1.08995 * 109.43247 * 174.72211 * 15 14 13 43 43 H 1.09003 * 109.46022 * 58.53390 * 16 15 14 44 44 H 1.08994 * 109.47695 * 95.06315 * 18 17 16 45 45 H 1.09006 * 109.47006 * 215.06449 * 18 17 16 46 46 H 1.09008 * 109.46758 * 335.06032 * 18 17 16 47 47 H 0.96994 * 120.00210 * 180.02562 * 22 21 19 48 48 H 1.08996 * 109.49384 * 301.41343 * 27 16 15 49 49 H 1.09003 * 109.52151 * 181.32843 * 27 16 15 50 50 H 1.09001 * 109.58379 * 353.37485 * 28 13 11 51 51 H 1.08997 * 109.58494 * 113.65221 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.2113 -2.0084 1.0654 6 7 1.9695 -2.6254 -0.0789 7 6 2.1548 -3.9233 -0.2213 8 6 2.6128 -4.7010 0.8274 9 6 2.8809 -4.1075 2.0479 10 6 2.6768 -2.7285 2.1757 11 6 2.9475 -2.0447 3.4545 12 8 2.1108 -1.3072 3.9386 13 7 4.1223 -2.2375 4.0864 14 6 5.1862 -3.0352 3.4615 15 6 6.4744 -2.1986 3.4378 16 6 6.7951 -1.7261 4.8576 17 7 8.0423 -0.9577 4.8460 18 6 8.1453 0.2594 4.0371 19 6 9.1119 -1.3770 5.5912 20 1 9.1659 -2.4012 5.9296 21 6 10.1266 -0.4857 5.9118 22 7 9.9298 0.8093 5.7837 23 14 11.7714 -1.1243 6.5250 24 1 12.7147 -1.2386 5.3838 25 1 12.3240 -0.1825 7.5315 26 1 11.5833 -2.4595 7.1472 27 6 5.6565 -0.8423 5.3723 28 6 4.3612 -1.6589 5.4156 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.9406 -4.3884 -1.1722 37 1 2.7597 -5.7626 0.6943 38 1 3.2388 -4.6936 2.8815 39 1 5.3485 -3.9447 4.0399 40 1 4.8982 -3.2943 2.4426 41 1 6.3374 -1.3337 2.7888 42 1 7.2962 -2.8087 3.0631 43 1 6.9075 -2.5909 5.5115 44 1 7.9219 1.1277 4.6569 45 1 9.1566 0.3471 3.6398 46 1 7.4341 0.2089 3.2125 47 1 10.6390 1.4321 6.0073 48 1 5.5273 0.0098 4.7050 49 1 5.8960 -0.4867 6.3745 50 1 3.5287 -1.0095 5.6864 51 1 4.4551 -2.4584 6.1505 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985822345.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:23 Heat of formation + Delta-G solvation = -7.094835 kcal Electronic energy + Delta-G solvation = -31834.860025 eV Core-core repulsion = 27735.705590 eV Total energy + Delta-G solvation = -4099.154435 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.20112 -39.61698 -38.39339 -37.38862 -35.05325 -33.47016 -33.17668 -31.99650 -30.90578 -30.27527 -29.56816 -27.44126 -26.00296 -25.52801 -24.30903 -23.91442 -22.75399 -22.04412 -21.33293 -20.17399 -18.90827 -18.45456 -17.31101 -17.03921 -16.73789 -16.11874 -15.72620 -15.51659 -15.00234 -14.84846 -14.59073 -14.24804 -13.95725 -13.92494 -13.67240 -13.41229 -13.32923 -13.28557 -12.92781 -12.59573 -12.50699 -12.46151 -12.33557 -12.22049 -12.12444 -11.68137 -11.46476 -11.13719 -10.97775 -10.93781 -10.85960 -10.78233 -10.38423 -10.24771 -10.22412 -10.16868 -9.99326 -9.81990 -9.63907 -9.48616 -8.73165 -8.54654 -8.40652 -6.77740 -5.70922 -3.13712 0.59353 0.99500 2.69869 2.83074 3.08887 3.38418 3.44870 3.46566 3.53272 3.96411 4.45713 4.50594 4.51772 4.67985 4.72824 4.79196 4.85767 5.01562 5.07304 5.15714 5.26184 5.36873 5.38886 5.43220 5.50694 5.54396 5.57248 5.59388 5.62195 5.65682 5.75510 5.81142 5.89771 5.95283 6.00186 6.04853 6.13411 6.17696 6.26797 6.40027 6.55225 6.64968 6.81404 6.99734 7.02746 7.08893 7.41420 7.47332 7.58246 7.74200 7.82383 8.27332 8.39540 9.24621 9.89407 10.37789 11.34048 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015134 B = 0.002745 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.636073 B =10197.541944 C =10827.789659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.080 3.920 3 C -0.152 4.152 4 O -0.280 6.280 5 C 0.369 3.631 6 N -0.543 5.543 7 C 0.158 3.842 8 C -0.220 4.220 9 C -0.009 4.009 10 C -0.198 4.198 11 C 0.570 3.430 12 O -0.529 6.529 13 N -0.600 5.600 14 C 0.107 3.893 15 C -0.146 4.146 16 C 0.180 3.820 17 N -0.596 5.596 18 C 0.165 3.835 19 C -0.254 4.254 20 H 0.069 0.931 21 C 0.000 4.000 22 N -0.906 5.906 23 Si 0.903 3.097 24 H -0.289 1.289 25 H -0.292 1.292 26 H -0.280 1.280 27 C -0.144 4.144 28 C 0.115 3.885 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.163 0.837 37 H 0.143 0.857 38 H 0.146 0.854 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.027 0.973 45 H 0.041 0.959 46 H -0.002 1.002 47 H 0.251 0.749 48 H 0.060 0.940 49 H 0.076 0.924 50 H 0.086 0.914 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.469 -9.355 -13.222 23.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.024 3.976 3 C -0.209 4.209 4 O -0.186 6.186 5 C 0.189 3.811 6 N -0.267 5.267 7 C 0.001 3.999 8 C -0.240 4.240 9 C -0.035 4.035 10 C -0.204 4.204 11 C 0.357 3.643 12 O -0.405 6.405 13 N -0.333 5.333 14 C -0.017 4.017 15 C -0.187 4.187 16 C 0.072 3.928 17 N -0.318 5.318 18 C 0.020 3.980 19 C -0.383 4.383 20 H 0.087 0.913 21 C -0.198 4.198 22 N -0.551 5.551 23 Si 0.733 3.267 24 H -0.217 1.217 25 H -0.219 1.219 26 H -0.205 1.205 27 C -0.185 4.185 28 C -0.007 4.007 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.107 0.893 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.180 0.820 37 H 0.161 0.839 38 H 0.164 0.836 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.081 0.919 44 H 0.046 0.954 45 H 0.060 0.940 46 H 0.016 0.984 47 H 0.062 0.938 48 H 0.078 0.922 49 H 0.094 0.906 50 H 0.105 0.895 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.032 -8.067 -13.374 23.856 hybrid contribution 1.295 -0.767 0.766 1.689 sum -16.737 -8.834 -12.608 22.740 Atomic orbital electron populations 1.22203 0.94763 1.02758 1.02698 1.22423 0.94543 0.93076 0.87599 1.21913 1.02270 0.93671 1.03067 1.86437 1.78642 1.15169 1.38326 1.19696 0.88128 0.85010 0.88246 1.67371 1.22628 1.12756 1.23940 1.22606 0.90806 0.87636 0.98807 1.21905 1.06139 1.02020 0.93957 1.21640 0.91783 0.92053 0.98033 1.19922 1.10797 0.94629 0.95088 1.17787 0.82041 0.81053 0.83455 1.90779 1.46153 1.37031 1.66562 1.48066 1.13779 1.52136 1.19351 1.22027 0.87732 0.94098 0.97810 1.22549 0.95238 0.99717 1.01154 1.20263 0.86015 0.93787 0.92749 1.43991 1.08827 1.27294 1.51670 1.20730 0.97624 0.88524 0.91118 1.19251 0.97460 0.93990 1.27625 0.91284 1.24934 0.99573 0.95088 1.00240 1.70105 1.31957 1.00314 1.52749 0.86260 0.84485 0.77878 0.78066 1.21653 1.21878 1.20511 1.22500 0.93966 0.99279 1.02735 1.21712 0.99293 0.97590 0.82100 0.91114 0.92153 0.91722 0.89300 0.91632 0.90460 0.91357 0.82007 0.83890 0.83588 0.91265 0.90505 0.91978 0.90804 0.91907 0.95427 0.94041 0.98391 0.93828 0.92170 0.90576 0.89542 0.91602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 9.53 37.16 0.35 -1.30 16 2 C 0.08 0.91 3.11 -26.73 -0.08 0.82 16 3 C -0.15 -1.52 9.56 37.16 0.36 -1.16 16 4 O -0.28 -4.20 8.85 -25.70 -0.23 -4.42 16 5 C 0.37 5.12 7.45 -16.61 -0.12 5.00 16 6 N -0.54 -6.29 8.64 -12.98 -0.11 -6.40 16 7 C 0.16 1.33 11.17 -17.49 -0.20 1.14 16 8 C -0.22 -1.67 10.09 -39.50 -0.40 -2.07 16 9 C -0.01 -0.09 7.72 -38.89 -0.30 -0.39 16 10 C -0.20 -2.68 4.79 -104.69 -0.50 -3.18 16 11 C 0.57 9.21 6.94 -12.48 -0.09 9.12 16 12 O -0.53 -10.32 16.01 -2.46 -0.04 -10.35 16 13 N -0.60 -8.98 2.97 -173.74 -0.52 -9.49 16 14 C 0.11 1.39 5.41 -3.49 -0.02 1.37 16 15 C -0.15 -2.41 5.34 -26.39 -0.14 -2.55 16 16 C 0.18 3.52 2.55 -67.89 -0.17 3.35 16 17 N -0.60 -14.60 2.82 -173.43 -0.49 -15.09 16 18 C 0.16 4.08 8.04 59.85 0.48 4.56 16 19 C -0.25 -6.84 9.62 -15.06 -0.14 -6.98 16 20 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 21 C 0.00 0.00 5.05 -17.43 -0.09 -0.09 16 22 N -0.91 -26.42 10.67 55.49 0.59 -25.83 16 23 Si 0.90 21.71 29.58 -169.99 -5.03 16.68 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 C -0.14 -2.67 5.34 -26.61 -0.14 -2.81 16 28 C 0.12 1.80 6.44 -3.71 -0.02 1.78 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.09 0.98 6.98 -51.93 -0.36 0.61 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 36 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.14 0.64 8.06 -52.49 -0.42 0.21 16 38 H 0.15 1.14 7.50 -52.49 -0.39 0.74 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.08 0.89 5.17 -51.93 -0.27 0.62 16 41 H 0.06 1.12 6.72 -51.93 -0.35 0.77 16 42 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.06 1.22 7.84 -51.93 -0.41 0.81 16 44 H 0.03 0.75 7.42 -51.93 -0.39 0.36 16 45 H 0.04 1.11 7.17 -51.93 -0.37 0.73 16 46 H 0.00 -0.05 6.47 -51.92 -0.34 -0.39 16 47 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 48 H 0.06 1.21 7.72 -51.93 -0.40 0.81 16 49 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 50 H 0.09 1.42 7.00 -51.93 -0.36 1.06 16 51 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 402.64 15.07 6.07 6.07 Total: -1.00 -33.51 402.64 -9.24 -42.75 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -8.26 Total: -0.51 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: -1.23 Total: 6.61 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: -0.52 Total: -56.81 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -0.27 Total: -14.78 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.51 -9.24 -42.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985822345.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.654 kcal (2) G-P(sol) polarization free energy of solvation -33.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds