Wall clock time and date at job start Wed Apr 1 2020 04:43:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.52998 * 109.46973 * 2 1
4 4 O 1.42895 * 109.47015 * 120.00005 * 2 1 3
5 5 C 1.35421 * 116.99991 * 90.00237 * 4 2 1
6 6 N 1.32236 * 119.80162 * 359.97438 * 5 4 2
7 7 C 1.31881 * 121.80189 * 180.02562 * 6 5 4
8 8 C 1.38354 * 121.18612 * 0.02562 * 7 6 5
9 9 C 1.38340 * 119.45954 * 0.02562 * 8 7 6
10 10 C 1.39988 * 118.34851 * 359.97438 * 9 8 7
11 11 C 1.47519 * 120.59676 * 180.02562 * 10 9 8
12 12 O 1.21588 * 120.00462 * 229.94353 * 11 10 9
13 13 N 1.34780 * 120.00144 * 49.94901 * 11 10 9
14 14 C 1.46931 * 120.62509 * 5.12219 * 13 11 10
15 15 C 1.53619 * 108.54491 * 126.37047 * 14 13 11
16 16 C 1.53039 * 109.24371 * 54.85005 * 15 14 13
17 17 N 1.46495 * 109.45046 * 178.49679 * 16 15 14
18 18 C 1.46502 * 119.99899 * 60.06877 * 17 16 15
19 19 C 1.36939 * 120.00556 * 240.06315 * 17 16 15
20 20 H 1.08001 * 119.99408 * 19.42306 * 19 17 16
21 21 C 1.38810 * 120.00263 * 199.42690 * 19 17 16
22 22 N 1.31615 * 120.00247 * 15.95662 * 21 19 17
23 23 Si 1.86797 * 119.99777 * 195.95540 * 21 19 17
24 24 H 1.48502 * 109.47060 * 94.97414 * 23 21 19
25 25 H 1.48501 * 109.47116 * 214.97209 * 23 21 19
26 26 H 1.48501 * 109.47460 * 334.97647 * 23 21 19
27 27 C 1.53042 * 109.53933 * 298.51481 * 16 15 14
28 28 C 1.46924 * 120.63586 * 185.39784 * 13 11 10
29 29 H 1.09001 * 109.47190 * 59.99885 * 1 2 3
30 30 H 1.08998 * 109.46829 * 179.97438 * 1 2 3
31 31 H 1.08999 * 109.46955 * 299.99949 * 1 2 3
32 32 H 1.08999 * 109.46955 * 240.00050 * 2 1 3
33 33 H 1.08998 * 109.47263 * 180.02562 * 3 2 1
34 34 H 1.09001 * 109.47257 * 300.00074 * 3 2 1
35 35 H 1.09007 * 109.47305 * 59.99884 * 3 2 1
36 36 H 1.08000 * 119.40773 * 179.71786 * 7 6 5
37 37 H 1.08002 * 120.27316 * 180.02562 * 8 7 6
38 38 H 1.08001 * 120.82502 * 179.97438 * 9 8 7
39 39 H 1.09000 * 109.58267 * 246.20189 * 14 13 11
40 40 H 1.09002 * 109.58947 * 6.62211 * 14 13 11
41 41 H 1.09000 * 109.63403 * 294.86514 * 15 14 13
42 42 H 1.08995 * 109.43247 * 174.72211 * 15 14 13
43 43 H 1.09003 * 109.46022 * 58.53390 * 16 15 14
44 44 H 1.08994 * 109.47695 * 95.06315 * 18 17 16
45 45 H 1.09006 * 109.47006 * 215.06449 * 18 17 16
46 46 H 1.09008 * 109.46758 * 335.06032 * 18 17 16
47 47 H 0.96994 * 120.00210 * 180.02562 * 22 21 19
48 48 H 1.08996 * 109.49384 * 301.41343 * 27 16 15
49 49 H 1.09003 * 109.52151 * 181.32843 * 27 16 15
50 50 H 1.09001 * 109.58379 * 353.37485 * 28 13 11
51 51 H 1.08997 * 109.58494 * 113.65221 * 28 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 8 2.0063 -0.6736 1.1667
5 6 2.2113 -2.0084 1.0654
6 7 1.9695 -2.6254 -0.0789
7 6 2.1548 -3.9233 -0.2213
8 6 2.6128 -4.7010 0.8274
9 6 2.8809 -4.1075 2.0479
10 6 2.6768 -2.7285 2.1757
11 6 2.9475 -2.0447 3.4545
12 8 2.1108 -1.3072 3.9386
13 7 4.1223 -2.2375 4.0864
14 6 5.1862 -3.0352 3.4615
15 6 6.4744 -2.1986 3.4378
16 6 6.7951 -1.7261 4.8576
17 7 8.0423 -0.9577 4.8460
18 6 8.1453 0.2594 4.0371
19 6 9.1119 -1.3770 5.5912
20 1 9.1659 -2.4012 5.9296
21 6 10.1266 -0.4857 5.9118
22 7 9.9298 0.8093 5.7837
23 14 11.7714 -1.1243 6.5250
24 1 12.7147 -1.2386 5.3838
25 1 12.3240 -0.1825 7.5315
26 1 11.5833 -2.4595 7.1472
27 6 5.6565 -0.8423 5.3723
28 6 4.3612 -1.6589 5.4156
29 1 -0.3633 0.5139 -0.8900
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3633 0.5138 0.8900
32 1 1.8933 -0.5138 -0.8900
33 1 3.1300 1.4426 -0.0005
34 1 1.6766 1.9563 -0.8900
35 1 1.6766 1.9564 0.8900
36 1 1.9406 -4.3884 -1.1722
37 1 2.7597 -5.7626 0.6943
38 1 3.2388 -4.6936 2.8815
39 1 5.3485 -3.9447 4.0399
40 1 4.8982 -3.2943 2.4426
41 1 6.3374 -1.3337 2.7888
42 1 7.2962 -2.8087 3.0631
43 1 6.9075 -2.5909 5.5115
44 1 7.9219 1.1277 4.6569
45 1 9.1566 0.3471 3.6398
46 1 7.4341 0.2089 3.2125
47 1 10.6390 1.4321 6.0073
48 1 5.5273 0.0098 4.7050
49 1 5.8960 -0.4867 6.3745
50 1 3.5287 -1.0095 5.6864
51 1 4.4551 -2.4584 6.1505
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000985822345.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:43:23
Heat of formation + Delta-G solvation = -7.094835 kcal
Electronic energy + Delta-G solvation = -31834.860025 eV
Core-core repulsion = 27735.705590 eV
Total energy + Delta-G solvation = -4099.154435 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.07 seconds
Orbital eigenvalues (eV)
-41.20112 -39.61698 -38.39339 -37.38862 -35.05325 -33.47016 -33.17668 -31.99650
-30.90578 -30.27527 -29.56816 -27.44126 -26.00296 -25.52801 -24.30903 -23.91442
-22.75399 -22.04412 -21.33293 -20.17399 -18.90827 -18.45456 -17.31101 -17.03921
-16.73789 -16.11874 -15.72620 -15.51659 -15.00234 -14.84846 -14.59073 -14.24804
-13.95725 -13.92494 -13.67240 -13.41229 -13.32923 -13.28557 -12.92781 -12.59573
-12.50699 -12.46151 -12.33557 -12.22049 -12.12444 -11.68137 -11.46476 -11.13719
-10.97775 -10.93781 -10.85960 -10.78233 -10.38423 -10.24771 -10.22412 -10.16868
-9.99326 -9.81990 -9.63907 -9.48616 -8.73165 -8.54654 -8.40652 -6.77740
-5.70922 -3.13712 0.59353 0.99500 2.69869 2.83074 3.08887 3.38418
3.44870 3.46566 3.53272 3.96411 4.45713 4.50594 4.51772 4.67985
4.72824 4.79196 4.85767 5.01562 5.07304 5.15714 5.26184 5.36873
5.38886 5.43220 5.50694 5.54396 5.57248 5.59388 5.62195 5.65682
5.75510 5.81142 5.89771 5.95283 6.00186 6.04853 6.13411 6.17696
6.26797 6.40027 6.55225 6.64968 6.81404 6.99734 7.02746 7.08893
7.41420 7.47332 7.58246 7.74200 7.82383 8.27332 8.39540 9.24621
9.89407 10.37789 11.34048
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.015134 B = 0.002745 C = 0.002585
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1849.636073 B =10197.541944 C =10827.789659
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.167 4.167
2 C 0.080 3.920
3 C -0.152 4.152
4 O -0.280 6.280
5 C 0.369 3.631
6 N -0.543 5.543
7 C 0.158 3.842
8 C -0.220 4.220
9 C -0.009 4.009
10 C -0.198 4.198
11 C 0.570 3.430
12 O -0.529 6.529
13 N -0.600 5.600
14 C 0.107 3.893
15 C -0.146 4.146
16 C 0.180 3.820
17 N -0.596 5.596
18 C 0.165 3.835
19 C -0.254 4.254
20 H 0.069 0.931
21 C 0.000 4.000
22 N -0.906 5.906
23 Si 0.903 3.097
24 H -0.289 1.289
25 H -0.292 1.292
26 H -0.280 1.280
27 C -0.144 4.144
28 C 0.115 3.885
29 H 0.070 0.930
30 H 0.059 0.941
31 H 0.064 0.936
32 H 0.089 0.911
33 H 0.065 0.935
34 H 0.077 0.923
35 H 0.067 0.933
36 H 0.163 0.837
37 H 0.143 0.857
38 H 0.146 0.854
39 H 0.069 0.931
40 H 0.077 0.923
41 H 0.062 0.938
42 H 0.073 0.927
43 H 0.063 0.937
44 H 0.027 0.973
45 H 0.041 0.959
46 H -0.002 1.002
47 H 0.251 0.749
48 H 0.060 0.940
49 H 0.076 0.924
50 H 0.086 0.914
51 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.469 -9.355 -13.222 23.822
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.224 4.224
2 C 0.024 3.976
3 C -0.209 4.209
4 O -0.186 6.186
5 C 0.189 3.811
6 N -0.267 5.267
7 C 0.001 3.999
8 C -0.240 4.240
9 C -0.035 4.035
10 C -0.204 4.204
11 C 0.357 3.643
12 O -0.405 6.405
13 N -0.333 5.333
14 C -0.017 4.017
15 C -0.187 4.187
16 C 0.072 3.928
17 N -0.318 5.318
18 C 0.020 3.980
19 C -0.383 4.383
20 H 0.087 0.913
21 C -0.198 4.198
22 N -0.551 5.551
23 Si 0.733 3.267
24 H -0.217 1.217
25 H -0.219 1.219
26 H -0.205 1.205
27 C -0.185 4.185
28 C -0.007 4.007
29 H 0.089 0.911
30 H 0.078 0.922
31 H 0.083 0.917
32 H 0.107 0.893
33 H 0.084 0.916
34 H 0.095 0.905
35 H 0.086 0.914
36 H 0.180 0.820
37 H 0.161 0.839
38 H 0.164 0.836
39 H 0.087 0.913
40 H 0.095 0.905
41 H 0.080 0.920
42 H 0.092 0.908
43 H 0.081 0.919
44 H 0.046 0.954
45 H 0.060 0.940
46 H 0.016 0.984
47 H 0.062 0.938
48 H 0.078 0.922
49 H 0.094 0.906
50 H 0.105 0.895
51 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -18.032 -8.067 -13.374 23.856
hybrid contribution 1.295 -0.767 0.766 1.689
sum -16.737 -8.834 -12.608 22.740
Atomic orbital electron populations
1.22203 0.94763 1.02758 1.02698 1.22423 0.94543 0.93076 0.87599
1.21913 1.02270 0.93671 1.03067 1.86437 1.78642 1.15169 1.38326
1.19696 0.88128 0.85010 0.88246 1.67371 1.22628 1.12756 1.23940
1.22606 0.90806 0.87636 0.98807 1.21905 1.06139 1.02020 0.93957
1.21640 0.91783 0.92053 0.98033 1.19922 1.10797 0.94629 0.95088
1.17787 0.82041 0.81053 0.83455 1.90779 1.46153 1.37031 1.66562
1.48066 1.13779 1.52136 1.19351 1.22027 0.87732 0.94098 0.97810
1.22549 0.95238 0.99717 1.01154 1.20263 0.86015 0.93787 0.92749
1.43991 1.08827 1.27294 1.51670 1.20730 0.97624 0.88524 0.91118
1.19251 0.97460 0.93990 1.27625 0.91284 1.24934 0.99573 0.95088
1.00240 1.70105 1.31957 1.00314 1.52749 0.86260 0.84485 0.77878
0.78066 1.21653 1.21878 1.20511 1.22500 0.93966 0.99279 1.02735
1.21712 0.99293 0.97590 0.82100 0.91114 0.92153 0.91722 0.89300
0.91632 0.90460 0.91357 0.82007 0.83890 0.83588 0.91265 0.90505
0.91978 0.90804 0.91907 0.95427 0.94041 0.98391 0.93828 0.92170
0.90576 0.89542 0.91602
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.65 9.53 37.16 0.35 -1.30 16
2 C 0.08 0.91 3.11 -26.73 -0.08 0.82 16
3 C -0.15 -1.52 9.56 37.16 0.36 -1.16 16
4 O -0.28 -4.20 8.85 -25.70 -0.23 -4.42 16
5 C 0.37 5.12 7.45 -16.61 -0.12 5.00 16
6 N -0.54 -6.29 8.64 -12.98 -0.11 -6.40 16
7 C 0.16 1.33 11.17 -17.49 -0.20 1.14 16
8 C -0.22 -1.67 10.09 -39.50 -0.40 -2.07 16
9 C -0.01 -0.09 7.72 -38.89 -0.30 -0.39 16
10 C -0.20 -2.68 4.79 -104.69 -0.50 -3.18 16
11 C 0.57 9.21 6.94 -12.48 -0.09 9.12 16
12 O -0.53 -10.32 16.01 -2.46 -0.04 -10.35 16
13 N -0.60 -8.98 2.97 -173.74 -0.52 -9.49 16
14 C 0.11 1.39 5.41 -3.49 -0.02 1.37 16
15 C -0.15 -2.41 5.34 -26.39 -0.14 -2.55 16
16 C 0.18 3.52 2.55 -67.89 -0.17 3.35 16
17 N -0.60 -14.60 2.82 -173.43 -0.49 -15.09 16
18 C 0.16 4.08 8.04 59.85 0.48 4.56 16
19 C -0.25 -6.84 9.62 -15.06 -0.14 -6.98 16
20 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16
21 C 0.00 0.00 5.05 -17.43 -0.09 -0.09 16
22 N -0.91 -26.42 10.67 55.49 0.59 -25.83 16
23 Si 0.90 21.71 29.58 -169.99 -5.03 16.68 16
24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16
25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16
26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
27 C -0.14 -2.67 5.34 -26.61 -0.14 -2.81 16
28 C 0.12 1.80 6.44 -3.71 -0.02 1.78 16
29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16
31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16
32 H 0.09 0.98 6.98 -51.93 -0.36 0.61 16
33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16
35 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16
36 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16
37 H 0.14 0.64 8.06 -52.49 -0.42 0.21 16
38 H 0.15 1.14 7.50 -52.49 -0.39 0.74 16
39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16
40 H 0.08 0.89 5.17 -51.93 -0.27 0.62 16
41 H 0.06 1.12 6.72 -51.93 -0.35 0.77 16
42 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16
43 H 0.06 1.22 7.84 -51.93 -0.41 0.81 16
44 H 0.03 0.75 7.42 -51.93 -0.39 0.36 16
45 H 0.04 1.11 7.17 -51.93 -0.37 0.73 16
46 H 0.00 -0.05 6.47 -51.92 -0.34 -0.39 16
47 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16
48 H 0.06 1.21 7.72 -51.93 -0.40 0.81 16
49 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16
50 H 0.09 1.42 7.00 -51.93 -0.36 1.06 16
51 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16
LS Contribution 402.64 15.07 6.07 6.07
Total: -1.00 -33.51 402.64 -9.24 -42.75
By element:
Atomic # 1 Polarization: 7.74 SS G_CDS: -8.26 Total: -0.51 kcal
Atomic # 6 Polarization: 7.84 SS G_CDS: -1.23 Total: 6.61 kcal
Atomic # 7 Polarization: -56.29 SS G_CDS: -0.52 Total: -56.81 kcal
Atomic # 8 Polarization: -14.51 SS G_CDS: -0.27 Total: -14.78 kcal
Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal
Total LS contribution 6.07 Total: 6.07 kcal
Total: -33.51 -9.24 -42.75 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000985822345.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 35.654 kcal
(2) G-P(sol) polarization free energy of solvation -33.510 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.144 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.238 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.749 kcal
(6) G-S(sol) free energy of system = (1) + (5) -7.095 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.07 seconds