Wall clock time and date at job start Wed Apr 1 2020 04:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46973 * 2 1 4 4 O 1.42895 * 109.47015 * 120.00005 * 2 1 3 5 5 C 1.35421 * 116.99991 * 90.00237 * 4 2 1 6 6 N 1.32236 * 119.80162 * 359.97438 * 5 4 2 7 7 C 1.31881 * 121.80189 * 180.02562 * 6 5 4 8 8 C 1.38354 * 121.18612 * 0.02562 * 7 6 5 9 9 C 1.38340 * 119.45954 * 0.02562 * 8 7 6 10 10 C 1.39988 * 118.34851 * 359.97438 * 9 8 7 11 11 C 1.47519 * 120.59676 * 180.02562 * 10 9 8 12 12 O 1.21588 * 120.00462 * 229.94353 * 11 10 9 13 13 N 1.34780 * 120.00144 * 49.94901 * 11 10 9 14 14 C 1.46931 * 120.62509 * 5.12219 * 13 11 10 15 15 C 1.53619 * 108.54491 * 126.37047 * 14 13 11 16 16 C 1.53039 * 109.24371 * 54.85005 * 15 14 13 17 17 N 1.46495 * 109.45046 * 178.49679 * 16 15 14 18 18 C 1.46502 * 119.99899 * 60.06877 * 17 16 15 19 19 C 1.36939 * 120.00556 * 240.06315 * 17 16 15 20 20 H 1.08001 * 119.99408 * 19.42306 * 19 17 16 21 21 C 1.38810 * 120.00263 * 199.42690 * 19 17 16 22 22 N 1.31615 * 120.00247 * 15.95662 * 21 19 17 23 23 Si 1.86797 * 119.99777 * 195.95540 * 21 19 17 24 24 H 1.48502 * 109.47060 * 94.97414 * 23 21 19 25 25 H 1.48501 * 109.47116 * 214.97209 * 23 21 19 26 26 H 1.48501 * 109.47460 * 334.97647 * 23 21 19 27 27 C 1.53042 * 109.53933 * 298.51481 * 16 15 14 28 28 C 1.46924 * 120.63586 * 185.39784 * 13 11 10 29 29 H 1.09001 * 109.47190 * 59.99885 * 1 2 3 30 30 H 1.08998 * 109.46829 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46955 * 299.99949 * 1 2 3 32 32 H 1.08999 * 109.46955 * 240.00050 * 2 1 3 33 33 H 1.08998 * 109.47263 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47257 * 300.00074 * 3 2 1 35 35 H 1.09007 * 109.47305 * 59.99884 * 3 2 1 36 36 H 1.08000 * 119.40773 * 179.71786 * 7 6 5 37 37 H 1.08002 * 120.27316 * 180.02562 * 8 7 6 38 38 H 1.08001 * 120.82502 * 179.97438 * 9 8 7 39 39 H 1.09000 * 109.58267 * 246.20189 * 14 13 11 40 40 H 1.09002 * 109.58947 * 6.62211 * 14 13 11 41 41 H 1.09000 * 109.63403 * 294.86514 * 15 14 13 42 42 H 1.08995 * 109.43247 * 174.72211 * 15 14 13 43 43 H 1.09003 * 109.46022 * 58.53390 * 16 15 14 44 44 H 1.08994 * 109.47695 * 95.06315 * 18 17 16 45 45 H 1.09006 * 109.47006 * 215.06449 * 18 17 16 46 46 H 1.09008 * 109.46758 * 335.06032 * 18 17 16 47 47 H 0.96994 * 120.00210 * 180.02562 * 22 21 19 48 48 H 1.08996 * 109.49384 * 301.41343 * 27 16 15 49 49 H 1.09003 * 109.52151 * 181.32843 * 27 16 15 50 50 H 1.09001 * 109.58379 * 353.37485 * 28 13 11 51 51 H 1.08997 * 109.58494 * 113.65221 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.2113 -2.0084 1.0654 6 7 1.9695 -2.6254 -0.0789 7 6 2.1548 -3.9233 -0.2213 8 6 2.6128 -4.7010 0.8274 9 6 2.8809 -4.1075 2.0479 10 6 2.6768 -2.7285 2.1757 11 6 2.9475 -2.0447 3.4545 12 8 2.1108 -1.3072 3.9386 13 7 4.1223 -2.2375 4.0864 14 6 5.1862 -3.0352 3.4615 15 6 6.4744 -2.1986 3.4378 16 6 6.7951 -1.7261 4.8576 17 7 8.0423 -0.9577 4.8460 18 6 8.1453 0.2594 4.0371 19 6 9.1119 -1.3770 5.5912 20 1 9.1659 -2.4012 5.9296 21 6 10.1266 -0.4857 5.9118 22 7 9.9298 0.8093 5.7837 23 14 11.7714 -1.1243 6.5250 24 1 12.7147 -1.2386 5.3838 25 1 12.3240 -0.1825 7.5315 26 1 11.5833 -2.4595 7.1472 27 6 5.6565 -0.8423 5.3723 28 6 4.3612 -1.6589 5.4156 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.9406 -4.3884 -1.1722 37 1 2.7597 -5.7626 0.6943 38 1 3.2388 -4.6936 2.8815 39 1 5.3485 -3.9447 4.0399 40 1 4.8982 -3.2943 2.4426 41 1 6.3374 -1.3337 2.7888 42 1 7.2962 -2.8087 3.0631 43 1 6.9075 -2.5909 5.5115 44 1 7.9219 1.1277 4.6569 45 1 9.1566 0.3471 3.6398 46 1 7.4341 0.2089 3.2125 47 1 10.6390 1.4321 6.0073 48 1 5.5273 0.0098 4.7050 49 1 5.8960 -0.4867 6.3745 50 1 3.5287 -1.0095 5.6864 51 1 4.4551 -2.4584 6.1505 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985822345.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:22 Heat of formation + Delta-G solvation = -28.370764 kcal Electronic energy + Delta-G solvation = -31835.782619 eV Core-core repulsion = 27735.705590 eV Total energy + Delta-G solvation = -4100.077029 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.11370 -40.78475 -39.25620 -38.86989 -36.71905 -34.37201 -34.25075 -33.51682 -32.04777 -31.53951 -31.00208 -28.23913 -28.06152 -26.81900 -25.39666 -24.92617 -24.05713 -23.55374 -22.19612 -21.49307 -20.19095 -19.39802 -18.76214 -18.41367 -17.94302 -17.24507 -16.95810 -16.64954 -16.29483 -15.95539 -15.72131 -15.47641 -15.31553 -15.09890 -14.96978 -14.84124 -14.47162 -14.32776 -14.17110 -13.98533 -13.67057 -13.36840 -13.32475 -13.24916 -13.18771 -13.11464 -12.90795 -12.81530 -12.64455 -12.37414 -12.22502 -12.06050 -11.96190 -11.83189 -11.78860 -11.66242 -11.30865 -11.22053 -10.85372 -10.61392 -10.50655 -9.73608 -9.49126 -8.81219 -7.80617 -5.25687 -0.19886 0.25678 1.47995 1.49158 1.57541 1.58335 1.97257 1.99273 2.52408 2.73282 3.18854 3.32361 3.48739 3.62825 3.80465 3.85804 3.93674 3.98019 3.99291 4.05611 4.15929 4.20548 4.22516 4.28130 4.36724 4.51564 4.54784 4.62768 4.68805 4.75816 4.76572 4.78052 4.80701 4.83497 4.89053 4.93734 4.96893 5.06971 5.11391 5.15881 5.19238 5.21989 5.35101 5.47255 5.49601 5.58134 5.66006 5.69477 6.23767 6.32466 6.35874 6.77436 7.07771 7.15506 7.89108 8.33989 9.23446 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015134 B = 0.002745 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.636073 B =10197.541944 C =10827.789659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.074 3.926 3 C -0.149 4.149 4 O -0.315 6.315 5 C 0.344 3.656 6 N -0.555 5.555 7 C 0.158 3.842 8 C -0.200 4.200 9 C -0.007 4.007 10 C -0.228 4.228 11 C 0.568 3.432 12 O -0.575 6.575 13 N -0.600 5.600 14 C 0.115 3.885 15 C -0.136 4.136 16 C 0.175 3.825 17 N -0.611 5.611 18 C 0.186 3.814 19 C -0.257 4.257 20 H 0.080 0.920 21 C -0.059 4.059 22 N -0.943 5.943 23 Si 0.969 3.031 24 H -0.290 1.290 25 H -0.300 1.300 26 H -0.263 1.263 27 C -0.133 4.133 28 C 0.125 3.875 29 H 0.096 0.904 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.092 0.908 33 H 0.052 0.948 34 H 0.106 0.894 35 H 0.055 0.945 36 H 0.202 0.798 37 H 0.187 0.813 38 H 0.170 0.830 39 H 0.104 0.896 40 H 0.098 0.902 41 H 0.040 0.960 42 H 0.080 0.920 43 H 0.072 0.928 44 H -0.005 1.005 45 H 0.015 0.985 46 H 0.020 0.980 47 H 0.245 0.755 48 H 0.033 0.967 49 H 0.056 0.944 50 H 0.073 0.927 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.993 -13.421 -14.856 26.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.018 3.982 3 C -0.206 4.206 4 O -0.222 6.222 5 C 0.165 3.835 6 N -0.279 5.279 7 C 0.001 3.999 8 C -0.220 4.220 9 C -0.032 4.032 10 C -0.234 4.234 11 C 0.357 3.643 12 O -0.455 6.455 13 N -0.332 5.332 14 C -0.007 4.007 15 C -0.175 4.175 16 C 0.069 3.931 17 N -0.333 5.333 18 C 0.040 3.960 19 C -0.387 4.387 20 H 0.098 0.902 21 C -0.254 4.254 22 N -0.590 5.590 23 Si 0.797 3.203 24 H -0.217 1.217 25 H -0.228 1.228 26 H -0.187 1.187 27 C -0.173 4.173 28 C 0.002 3.998 29 H 0.115 0.885 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.110 0.890 33 H 0.072 0.928 34 H 0.124 0.876 35 H 0.074 0.926 36 H 0.218 0.782 37 H 0.204 0.796 38 H 0.187 0.813 39 H 0.122 0.878 40 H 0.116 0.884 41 H 0.059 0.941 42 H 0.099 0.901 43 H 0.090 0.910 44 H 0.013 0.987 45 H 0.034 0.966 46 H 0.038 0.962 47 H 0.054 0.946 48 H 0.052 0.948 49 H 0.075 0.925 50 H 0.092 0.908 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -18.570 -12.190 -15.024 26.817 hybrid contribution 1.391 0.421 1.190 1.879 sum -17.179 -11.769 -13.834 25.000 Atomic orbital electron populations 1.22147 0.93816 1.02346 1.03312 1.22619 0.95343 0.93264 0.86951 1.21937 1.01466 0.93376 1.03842 1.86394 1.79307 1.16470 1.40018 1.19908 0.89402 0.84829 0.89320 1.67428 1.23045 1.14429 1.22976 1.23425 0.89108 0.86616 1.00740 1.22376 1.03433 1.03831 0.92332 1.21985 0.91139 0.90341 0.99780 1.19881 1.13607 0.96292 0.93661 1.18280 0.81583 0.80351 0.84056 1.90743 1.47691 1.39189 1.67901 1.48127 1.14111 1.52027 1.18936 1.22140 0.84986 0.93919 0.99697 1.22372 0.97519 0.99581 0.98076 1.20519 0.84141 0.93386 0.95088 1.44240 1.10368 1.27331 1.51333 1.20358 0.96466 0.88020 0.91127 1.19666 0.98035 0.94354 1.26624 0.90224 1.25745 1.02962 0.95281 1.01397 1.70285 1.32562 1.01493 1.54668 0.85215 0.80188 0.77696 0.77164 1.21674 1.22766 1.18726 1.22299 0.95473 0.98735 1.00798 1.21542 0.96819 0.97895 0.83547 0.88490 0.93001 0.93003 0.88976 0.92849 0.87555 0.92632 0.78181 0.79605 0.81282 0.87834 0.88380 0.94098 0.90119 0.90961 0.98661 0.96613 0.96204 0.94550 0.94772 0.92537 0.90848 0.88863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.14 9.53 71.98 0.69 -2.45 16 2 C 0.07 1.71 3.11 30.59 0.10 1.81 16 3 C -0.15 -3.07 9.56 71.98 0.69 -2.38 16 4 O -0.31 -9.83 8.85 -79.75 -0.71 -10.53 16 5 C 0.34 9.44 7.45 85.13 0.63 10.07 16 6 N -0.55 -11.85 8.64 -308.00 -2.66 -14.51 16 7 C 0.16 2.02 11.17 84.71 0.95 2.96 16 8 C -0.20 -2.02 10.09 22.32 0.23 -1.80 16 9 C -0.01 -0.11 7.72 22.72 0.18 0.07 16 10 C -0.23 -5.89 4.79 -19.91 -0.10 -5.99 16 11 C 0.57 18.32 6.94 86.69 0.60 18.92 16 12 O -0.58 -23.36 16.01 3.42 0.05 -23.31 16 13 N -0.60 -17.26 2.97 -821.85 -2.44 -19.70 16 14 C 0.11 2.64 5.41 86.51 0.47 3.11 16 15 C -0.14 -4.25 5.34 30.82 0.16 -4.08 16 16 C 0.18 6.74 2.55 45.02 0.11 6.85 16 17 N -0.61 -30.23 2.82 -702.62 -1.98 -32.21 16 18 C 0.19 9.56 8.04 127.77 1.03 10.59 16 19 C -0.26 -13.80 9.62 84.03 0.81 -12.99 16 20 H 0.08 4.05 7.81 -2.91 -0.02 4.02 16 21 C -0.06 -3.33 5.05 84.86 0.43 -2.90 16 22 N -0.94 -56.83 10.67 21.65 0.23 -56.60 16 23 Si 0.97 44.91 29.58 68.60 2.03 46.94 16 24 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 25 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 26 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 27 C -0.13 -5.02 5.34 30.67 0.16 -4.85 16 28 C 0.12 3.86 6.44 86.36 0.56 4.42 16 29 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.05 1.13 8.14 -2.39 -0.02 1.12 16 32 H 0.09 2.01 6.98 -2.39 -0.02 1.99 16 33 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 36 H 0.20 0.90 8.06 -2.91 -0.02 0.88 16 37 H 0.19 0.33 8.06 -2.91 -0.02 0.31 16 38 H 0.17 1.79 7.50 -2.91 -0.02 1.77 16 39 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.10 1.92 5.17 -2.39 -0.01 1.91 16 41 H 0.04 1.45 6.72 -2.39 -0.02 1.43 16 42 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 43 H 0.07 2.65 7.84 -2.39 -0.02 2.63 16 44 H 0.00 -0.28 7.42 -2.39 -0.02 -0.30 16 45 H 0.02 0.85 7.17 -2.38 -0.02 0.84 16 46 H 0.02 0.90 6.47 -2.38 -0.02 0.89 16 47 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 48 H 0.03 1.44 7.72 -2.39 -0.02 1.42 16 49 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 50 H 0.07 2.50 7.00 -2.39 -0.02 2.48 16 51 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -78.28 402.64 3.13 -75.14 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 0.92 Total: 13.42 kcal Atomic # 6 Polarization: 13.67 SS G_CDS: 7.69 Total: 21.35 kcal Atomic # 7 Polarization: -116.17 SS G_CDS: -6.85 Total: -123.02 kcal Atomic # 8 Polarization: -33.19 SS G_CDS: -0.65 Total: -33.84 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -78.28 3.13 -75.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985822345.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.772 kcal (2) G-P(sol) polarization free energy of solvation -78.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds