Wall clock time and date at job start Wed Apr 1 2020 05:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47245 * 2 1 4 4 O 1.42904 * 109.46878 * 119.99253 * 2 1 3 5 5 C 1.35665 * 116.99707 * 84.50011 * 4 2 1 6 6 C 1.38943 * 120.57963 * 4.70877 * 5 4 2 7 7 N 1.31621 * 120.79355 * 180.02562 * 6 5 4 8 8 C 1.31910 * 122.14836 * 359.97187 * 7 6 5 9 9 C 1.37962 * 121.07191 * 359.71183 * 8 7 6 10 10 C 1.39954 * 119.07036 * 0.58809 * 9 8 7 11 11 C 1.47835 * 120.96425 * 179.70670 * 10 9 8 12 12 O 1.21544 * 120.00136 * 215.80315 * 11 10 9 13 13 N 1.34782 * 120.00041 * 35.79523 * 11 10 9 14 14 C 1.48147 * 127.83694 * 356.15416 * 13 11 10 15 15 C 1.54391 * 104.61507 * 140.41749 * 14 13 11 16 16 H 1.09003 * 110.33919 * 264.99313 * 15 14 13 17 17 N 1.46500 * 110.34156 * 142.73685 * 15 14 13 18 18 C 1.36941 * 119.99994 * 89.46121 * 17 15 14 19 19 H 1.08004 * 119.99597 * 0.02562 * 18 17 15 20 20 C 1.38816 * 119.99953 * 179.97438 * 18 17 15 21 21 N 1.31622 * 119.99703 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99689 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47021 * 90.00176 * 22 20 18 24 24 H 1.48500 * 109.46568 * 209.99708 * 22 20 18 25 25 H 1.48495 * 109.47332 * 329.99874 * 22 20 18 26 26 C 1.54283 * 104.96130 * 23.86516 * 15 14 13 27 27 C 1.52999 * 110.34454 * 118.87257 * 26 15 14 28 28 C 1.53003 * 110.34304 * 241.02089 * 26 15 14 29 29 C 1.48311 * 127.77046 * 176.08486 * 13 11 10 30 30 H 1.08993 * 109.47210 * 300.00769 * 1 2 3 31 31 H 1.09000 * 109.46415 * 60.00320 * 1 2 3 32 32 H 1.09001 * 109.46788 * 180.02562 * 1 2 3 33 33 H 1.08991 * 109.47583 * 239.99615 * 2 1 3 34 34 H 1.08997 * 109.47790 * 179.97438 * 3 2 1 35 35 H 1.09011 * 109.47170 * 299.99683 * 3 2 1 36 36 H 1.09001 * 109.47659 * 59.99188 * 3 2 1 37 37 H 1.07995 * 119.60402 * 0.02562 * 6 5 4 38 38 H 1.08000 * 119.46290 * 180.02562 * 8 7 6 39 39 H 1.08005 * 120.46508 * 180.29463 * 9 8 7 40 40 H 1.08999 * 110.40606 * 21.63313 * 14 13 11 41 41 H 1.08994 * 110.40337 * 259.19968 * 14 13 11 42 42 H 0.97003 * 119.99822 * 269.45717 * 17 15 14 43 43 H 0.96996 * 119.99204 * 179.97438 * 21 20 18 44 44 H 1.08994 * 109.47322 * 181.47151 * 27 26 15 45 45 H 1.09007 * 109.46608 * 301.47452 * 27 26 15 46 46 H 1.09003 * 109.47103 * 61.46791 * 27 26 15 47 47 H 1.08991 * 109.47387 * 298.52905 * 28 26 15 48 48 H 1.09004 * 109.46696 * 58.52922 * 28 26 15 49 49 H 1.09001 * 109.47263 * 178.52610 * 28 26 15 50 50 H 1.08999 * 110.38408 * 100.78628 * 29 13 11 51 51 H 1.09001 * 110.50342 * 338.30798 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 2.1023 -2.0252 1.1017 6 6 1.8416 -2.6959 -0.0868 7 7 1.9330 -4.0071 -0.1547 8 6 2.2725 -4.7419 0.8869 9 6 2.5556 -4.1613 2.1060 10 6 2.4669 -2.7705 2.2337 11 6 2.7548 -2.1051 3.5221 12 8 2.1179 -1.1251 3.8557 13 7 3.7236 -2.5852 4.3268 14 6 4.5462 -3.8019 4.1327 15 6 5.9611 -3.3936 4.5962 16 1 6.5612 -3.0735 3.7444 17 7 6.6117 -4.5087 5.2887 18 6 7.3539 -5.4154 4.5799 19 1 7.4598 -5.3081 3.5104 20 6 7.9708 -6.4717 5.2361 21 7 7.8420 -6.6020 6.5395 22 14 8.9837 -7.7081 4.2692 23 1 10.3946 -7.2494 4.2046 24 1 8.9235 -9.0308 4.9415 25 1 8.4383 -7.8268 2.8932 26 6 5.7377 -2.2160 5.5677 27 6 6.2632 -2.5686 6.9607 28 6 6.4282 -0.9555 5.0432 29 6 4.2077 -2.0132 5.6067 30 1 -0.3633 0.5139 0.8898 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8898 34 1 3.1300 1.4426 0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.6766 1.9564 0.8899 37 1 1.5605 -2.1345 -0.9656 38 1 2.3346 -5.8151 0.7824 39 1 2.8372 -4.7720 2.9511 40 1 4.5586 -4.0885 3.0812 41 1 4.1664 -4.6191 4.7459 42 1 6.5169 -4.6047 6.2493 43 1 8.2728 -7.3403 6.9979 44 1 6.0748 -1.7382 7.6410 45 1 5.7538 -3.4604 7.3261 46 1 7.3352 -2.7587 6.9073 47 1 7.5016 -1.1315 4.9733 48 1 6.0353 -0.7097 4.0566 49 1 6.2396 -0.1270 5.7261 50 1 3.7744 -2.5502 6.4505 51 1 3.9664 -0.9519 5.6661 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996098491.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:25 Heat of formation + Delta-G solvation = -9.384116 kcal Electronic energy + Delta-G solvation = -31943.130167 eV Core-core repulsion = 27843.876461 eV Total energy + Delta-G solvation = -4099.253706 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.14337 -39.77060 -38.58382 -37.81421 -34.20251 -33.75850 -33.37254 -32.06572 -30.84065 -30.33848 -27.73602 -27.58832 -26.96794 -26.52260 -24.71665 -23.81994 -23.55988 -21.87838 -21.29669 -20.01504 -18.60945 -18.09984 -17.47719 -17.21869 -16.81433 -16.05830 -15.69248 -15.45160 -14.90400 -14.78173 -14.62890 -14.46892 -14.11514 -13.92966 -13.79196 -13.54624 -13.35742 -13.26109 -12.88154 -12.71807 -12.65353 -12.50816 -12.34223 -12.11072 -11.90284 -11.73956 -11.58271 -11.37374 -11.25626 -11.10685 -10.98223 -10.95830 -10.59094 -10.50286 -10.23398 -10.12640 -9.93778 -9.73522 -9.68034 -9.43208 -9.03988 -8.62047 -8.39608 -7.08912 -5.87561 -3.17448 0.71601 0.98967 2.81674 2.89294 3.09756 3.37552 3.43806 3.44761 3.68347 4.18024 4.35342 4.43371 4.51912 4.56105 4.59935 4.72010 4.77203 4.94653 5.02802 5.08828 5.19336 5.22365 5.32813 5.39124 5.42712 5.45948 5.46914 5.55917 5.63258 5.64923 5.78289 5.78758 5.84618 5.85229 5.88928 5.97630 6.03172 6.13695 6.20954 6.28577 6.30903 6.32830 6.40652 6.48813 6.59711 6.81116 6.92281 7.06732 7.61684 7.73948 7.76945 8.29268 8.32444 9.43211 9.97500 10.32716 11.34500 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012456 B = 0.003230 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.348126 B = 8666.317938 C =10037.693725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.070 3.930 3 C -0.148 4.148 4 O -0.280 6.280 5 C 0.131 3.869 6 C 0.008 3.992 7 N -0.436 5.436 8 C 0.053 3.947 9 C -0.099 4.099 10 C -0.117 4.117 11 C 0.581 3.419 12 O -0.531 6.531 13 N -0.612 5.612 14 C 0.066 3.934 15 C 0.177 3.823 16 H 0.063 0.937 17 N -0.715 5.715 18 C -0.247 4.247 19 H 0.071 0.929 20 C -0.008 4.008 21 N -0.930 5.930 22 Si 0.906 3.094 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.281 1.281 26 C -0.089 4.089 27 C -0.129 4.129 28 C -0.130 4.130 29 C 0.120 3.880 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.163 0.837 38 H 0.165 0.835 39 H 0.154 0.846 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.391 0.609 43 H 0.256 0.744 44 H 0.045 0.955 45 H 0.062 0.938 46 H 0.072 0.928 47 H 0.060 0.940 48 H 0.049 0.951 49 H 0.051 0.949 50 H 0.071 0.929 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.085 12.041 -10.492 20.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.014 3.986 3 C -0.205 4.205 4 O -0.191 6.191 5 C 0.081 3.919 6 C -0.152 4.152 7 N -0.145 5.145 8 C -0.103 4.103 9 C -0.119 4.119 10 C -0.128 4.128 11 C 0.369 3.631 12 O -0.408 6.408 13 N -0.345 5.345 14 C -0.059 4.059 15 C 0.064 3.936 16 H 0.081 0.919 17 N -0.358 5.358 18 C -0.378 4.378 19 H 0.089 0.911 20 C -0.204 4.204 21 N -0.577 5.577 22 Si 0.737 3.263 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 C -0.090 4.090 27 C -0.187 4.187 28 C -0.188 4.188 29 C -0.003 4.003 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.180 0.820 38 H 0.182 0.818 39 H 0.172 0.828 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.229 0.771 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.081 0.919 46 H 0.091 0.909 47 H 0.079 0.921 48 H 0.068 0.932 49 H 0.070 0.930 50 H 0.089 0.911 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.519 12.231 -11.081 20.715 hybrid contribution 0.679 -0.626 0.352 0.988 sum -11.841 11.606 -10.729 19.748 Atomic orbital electron populations 1.22352 0.94648 1.03133 1.03427 1.22584 0.94707 0.94124 0.87203 1.21835 1.02265 0.93138 1.03222 1.86316 1.79332 1.14724 1.38708 1.19994 0.93982 0.84290 0.93667 1.22918 1.04640 0.91270 0.96344 1.67354 1.09136 1.06188 1.31858 1.22611 0.98998 1.00623 0.88071 1.22584 0.95798 0.93167 1.00334 1.19727 1.06224 0.93473 0.93398 1.17422 0.79550 0.83422 0.82665 1.90775 1.49332 1.26498 1.74198 1.48913 1.35374 1.27488 1.22706 1.23950 0.93538 0.86605 1.01815 1.21103 0.90630 0.87838 0.94016 0.91890 1.42720 1.58191 1.27016 1.07843 1.19258 1.23331 1.03398 0.91855 0.91145 1.24734 1.00921 0.99100 0.95656 1.69651 1.48179 1.32979 1.06903 0.86217 0.80279 0.80879 0.78956 1.21688 1.21754 1.20667 1.21773 0.93291 0.96489 0.97487 1.21677 1.02797 1.00430 0.93805 1.21787 1.00648 0.96040 1.00285 1.22480 0.93342 0.99376 0.85055 0.91030 0.90792 0.92007 0.90745 0.91531 0.90382 0.91124 0.81994 0.81773 0.82810 0.90753 0.90182 0.77101 0.93365 0.93620 0.91908 0.90915 0.92123 0.93154 0.93025 0.91076 0.90411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.44 9.35 37.16 0.35 -1.09 16 2 C 0.07 0.65 2.87 -26.73 -0.08 0.57 16 3 C -0.15 -1.15 9.56 37.16 0.36 -0.80 16 4 O -0.28 -3.85 8.62 -34.50 -0.30 -4.15 16 5 C 0.13 1.82 6.56 -38.53 -0.25 1.57 16 6 C 0.01 0.09 9.70 -17.38 -0.17 -0.07 16 7 N -0.44 -5.66 10.32 -13.17 -0.14 -5.80 16 8 C 0.05 0.65 11.16 -17.62 -0.20 0.45 16 9 C -0.10 -1.30 7.91 -39.04 -0.31 -1.61 16 10 C -0.12 -1.77 5.62 -104.54 -0.59 -2.35 16 11 C 0.58 9.99 7.50 -12.33 -0.09 9.90 16 12 O -0.53 -10.49 16.39 -10.48 -0.17 -10.66 16 13 N -0.61 -9.91 3.32 -170.29 -0.57 -10.47 16 14 C 0.07 1.10 5.09 -2.41 -0.01 1.09 16 15 C 0.18 3.24 3.35 -66.53 -0.22 3.02 16 16 H 0.06 1.21 7.66 -51.93 -0.40 0.82 16 17 N -0.71 -16.10 4.59 -52.06 -0.24 -16.34 16 18 C -0.25 -6.31 9.96 -15.06 -0.15 -6.46 16 19 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 20 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 21 N -0.93 -26.30 13.06 55.49 0.72 -25.57 16 22 Si 0.91 21.26 29.55 -169.99 -5.02 16.24 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 C -0.09 -1.40 1.03 -153.11 -0.16 -1.55 16 27 C -0.13 -2.06 7.11 37.16 0.26 -1.80 16 28 C -0.13 -1.88 8.23 37.16 0.31 -1.57 16 29 C 0.12 1.85 6.14 -2.32 -0.01 1.83 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.53 7.62 -51.93 -0.40 0.14 16 33 H 0.07 0.57 5.88 -51.93 -0.31 0.26 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.16 1.50 5.82 -52.49 -0.31 1.19 16 38 H 0.17 1.57 8.06 -52.49 -0.42 1.15 16 39 H 0.15 1.91 6.01 -52.48 -0.32 1.60 16 40 H 0.07 1.18 5.69 -51.93 -0.30 0.89 16 41 H 0.08 1.38 8.02 -51.93 -0.42 0.97 16 42 H 0.39 9.26 5.09 -40.82 -0.21 9.05 16 43 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.06 1.07 6.86 -51.93 -0.36 0.71 16 46 H 0.07 1.31 7.84 -51.93 -0.41 0.90 16 47 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.07 1.06 7.85 -51.93 -0.41 0.65 16 51 H 0.08 1.19 7.64 -51.93 -0.40 0.80 16 LS Contribution 403.27 15.07 6.08 6.08 Total: -1.00 -31.24 403.27 -8.67 -39.92 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -7.98 Total: 9.94 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -1.06 Total: 0.81 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: -0.22 Total: -58.18 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.47 Total: -14.81 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.24 -8.67 -39.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996098491.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.534 kcal (2) G-P(sol) polarization free energy of solvation -31.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds