Wall clock time and date at job start Wed Apr 1 2020 04:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 O 1.42900 * 109.47616 * 179.97438 * 3 2 1 5 5 C 1.35647 * 117.00279 * 180.02562 * 4 3 2 6 6 C 1.39346 * 120.53790 * 0.02562 * 5 4 3 7 7 C 1.38308 * 118.43690 * 180.02562 * 6 5 4 8 8 C 1.38765 * 119.44526 * 359.97438 * 7 6 5 9 9 N 1.31376 * 121.06626 * 359.97438 * 8 7 6 10 10 C 1.32855 * 121.69916 * 359.73788 * 9 8 7 11 11 C 1.47829 * 119.78741 * 180.26819 * 10 9 8 12 12 O 1.21554 * 120.00554 * 180.27297 * 11 10 9 13 13 N 1.34774 * 119.99773 * 0.27721 * 11 10 9 14 14 C 1.47024 * 125.65353 * 0.02562 * 13 11 10 15 15 C 1.54320 * 107.27524 * 181.02294 * 14 13 11 16 16 H 1.08997 * 110.72247 * 263.82886 * 15 14 13 17 17 N 1.46498 * 110.72005 * 140.73340 * 15 14 13 18 18 C 1.36935 * 120.00014 * 86.45270 * 17 15 14 19 19 H 1.08000 * 119.99803 * 0.02562 * 18 17 15 20 20 C 1.38814 * 120.00091 * 179.97438 * 18 17 15 21 21 N 1.31623 * 120.00110 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00039 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47033 * 60.00396 * 22 20 18 24 24 H 1.48497 * 109.46983 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47024 * 300.00183 * 22 20 18 26 26 C 1.55159 * 102.93989 * 22.19419 * 15 14 13 27 27 C 1.53003 * 111.00270 * 82.57370 * 26 15 14 28 28 C 1.53005 * 111.00217 * 206.38369 * 26 15 14 29 29 C 1.47429 * 125.64902 * 179.71208 * 13 11 10 30 30 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 33 33 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 34 34 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 35 35 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 36 36 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 37 37 H 1.07993 * 120.78426 * 359.97438 * 6 5 4 38 38 H 1.07997 * 120.27641 * 179.97438 * 7 6 5 39 39 H 1.07998 * 119.46676 * 179.97438 * 8 7 6 40 40 H 1.08999 * 109.87713 * 300.44735 * 14 13 11 41 41 H 1.08998 * 109.88037 * 61.44627 * 14 13 11 42 42 H 0.97002 * 120.00352 * 266.45823 * 17 15 14 43 43 H 0.96999 * 119.99945 * 179.97438 * 21 20 18 44 44 H 1.08993 * 109.47540 * 60.00178 * 27 26 15 45 45 H 1.09003 * 109.46823 * 180.02562 * 27 26 15 46 46 H 1.08998 * 109.46714 * 299.99308 * 27 26 15 47 47 H 1.08992 * 109.47101 * 60.00032 * 28 26 15 48 48 H 1.08999 * 109.46853 * 180.02562 * 28 26 15 49 49 H 1.08999 * 109.46917 * 299.99800 * 28 26 15 50 50 H 1.08997 * 110.37035 * 274.74935 * 29 13 11 51 51 H 1.09007 * 110.36317 * 37.07233 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0848 2.6512 0.0012 6 6 3.3369 3.8269 0.0018 7 6 4.0096 5.0354 0.0019 8 6 5.3972 5.0437 0.0019 9 7 6.0819 3.9225 0.0024 10 6 5.4810 2.7376 0.0080 11 6 6.2931 1.5024 0.0143 12 8 5.7475 0.4162 0.0145 13 7 7.6386 1.5806 0.0200 14 6 8.4248 2.8229 0.0212 15 6 9.9149 2.4222 0.0020 16 1 10.3267 2.4201 1.0112 17 7 10.6816 3.3188 -0.8666 18 6 11.1832 4.4915 -0.3682 19 1 11.0138 4.7552 0.6653 20 6 11.9101 5.3408 -1.1912 21 7 12.1169 5.0192 -2.4506 22 14 12.5949 6.9402 -0.5111 23 1 13.5237 6.6444 0.6091 24 1 13.3260 7.6613 -1.5838 25 1 11.4787 7.7867 -0.0183 26 6 9.8807 0.9844 -0.5800 27 6 9.8095 1.0129 -2.1081 28 6 11.0869 0.1716 -0.1052 29 6 8.5658 0.4345 0.0326 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.6766 1.9564 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 2.2574 3.7953 0.0013 38 1 3.4594 5.9647 0.0019 39 1 5.9228 5.9872 0.0016 40 1 8.1879 3.4123 -0.8646 41 1 8.2051 3.3998 0.9196 42 1 10.8340 3.0818 -1.7948 43 1 12.6245 5.6128 -3.0257 44 1 10.6846 1.5289 -2.5031 45 1 9.7862 -0.0079 -2.4898 46 1 8.9066 1.5377 -2.4200 47 1 11.0769 0.1085 0.9829 48 1 11.0382 -0.8317 -0.5282 49 1 12.0051 0.6593 -0.4324 50 1 8.7340 0.0937 1.0542 51 1 8.1734 -0.3777 -0.5793 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996222682.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:32 Heat of formation + Delta-G solvation = -16.361438 kcal Electronic energy + Delta-G solvation = -31575.819791 eV Core-core repulsion = 27476.263526 eV Total energy + Delta-G solvation = -4099.556265 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.98036 -39.54996 -38.40776 -37.57731 -34.30730 -33.96025 -33.16695 -32.19445 -30.70275 -30.56790 -27.40535 -27.03096 -26.89788 -26.43861 -24.36647 -23.69708 -23.02375 -21.82917 -21.17023 -19.70777 -18.60297 -18.16682 -17.31698 -17.08327 -16.67365 -16.60404 -15.66629 -15.52122 -14.94312 -14.71916 -14.61418 -14.34241 -14.01575 -13.89006 -13.74333 -13.56993 -13.13921 -12.95522 -12.83859 -12.55470 -12.43829 -12.33471 -12.16488 -11.94534 -11.89463 -11.81432 -11.44755 -11.29027 -11.10810 -10.97028 -10.95072 -10.82922 -10.47550 -10.40729 -10.17866 -9.95846 -9.91667 -9.68147 -9.55734 -9.40797 -8.83847 -8.56932 -8.03896 -6.96199 -5.75983 -3.04692 0.65688 1.14931 2.86967 2.98193 3.29281 3.44891 3.49699 3.50300 3.92307 4.27262 4.42381 4.49275 4.54563 4.60748 4.64679 4.82003 4.87703 4.95292 5.00936 5.04490 5.19174 5.23382 5.29670 5.30793 5.38762 5.61400 5.62357 5.70172 5.74532 5.75707 5.83148 5.89346 5.92362 5.95937 5.98252 6.09972 6.13939 6.26510 6.29525 6.40233 6.46984 6.54284 6.76247 6.79629 6.81068 6.87324 7.08734 7.14360 7.72307 7.78143 7.97593 8.42663 8.53713 9.54449 10.10586 10.45915 11.46476 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013222 B = 0.003021 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.104221 B = 9265.057536 C =10946.464479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C 0.050 3.950 4 O -0.272 6.272 5 C 0.135 3.865 6 C -0.181 4.181 7 C -0.110 4.110 8 C 0.058 3.942 9 N -0.401 5.401 10 C 0.051 3.949 11 C 0.580 3.420 12 O -0.533 6.533 13 N -0.594 5.594 14 C 0.094 3.906 15 C 0.174 3.826 16 H 0.062 0.938 17 N -0.711 5.711 18 C -0.239 4.239 19 H 0.070 0.930 20 C -0.011 4.011 21 N -0.933 5.933 22 Si 0.906 3.094 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.286 1.286 26 C -0.086 4.086 27 C -0.131 4.131 28 C -0.128 4.128 29 C 0.119 3.881 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.166 0.834 40 H 0.081 0.919 41 H 0.062 0.938 42 H 0.389 0.611 43 H 0.255 0.745 44 H 0.072 0.928 45 H 0.047 0.953 46 H 0.053 0.947 47 H 0.052 0.948 48 H 0.049 0.951 49 H 0.067 0.933 50 H 0.065 0.935 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.405 -6.262 4.990 21.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.025 4.025 4 O -0.182 6.182 5 C 0.084 3.916 6 C -0.207 4.207 7 C -0.130 4.130 8 C -0.102 4.102 9 N -0.112 5.112 10 C -0.089 4.089 11 C 0.367 3.633 12 O -0.410 6.410 13 N -0.326 5.326 14 C -0.031 4.031 15 C 0.062 3.938 16 H 0.080 0.920 17 N -0.353 5.353 18 C -0.370 4.370 19 H 0.088 0.912 20 C -0.207 4.207 21 N -0.581 5.581 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.213 1.213 26 C -0.088 4.088 27 C -0.188 4.188 28 C -0.186 4.186 29 C -0.004 4.004 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.160 0.840 38 H 0.159 0.841 39 H 0.184 0.816 40 H 0.099 0.901 41 H 0.081 0.919 42 H 0.226 0.774 43 H 0.065 0.935 44 H 0.091 0.909 45 H 0.066 0.934 46 H 0.072 0.928 47 H 0.071 0.929 48 H 0.068 0.932 49 H 0.086 0.914 50 H 0.083 0.917 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.689 -6.912 5.054 21.471 hybrid contribution -0.807 1.392 0.029 1.609 sum -20.496 -5.520 5.083 21.827 Atomic orbital electron populations 1.21695 0.94357 1.02543 1.01998 1.21447 0.95618 0.94611 1.04302 1.23001 0.78989 0.99388 1.01137 1.86402 1.20483 1.24780 1.86504 1.19994 0.92218 0.85551 0.93841 1.21686 1.00768 0.91899 1.06376 1.22215 0.95873 0.98258 0.96679 1.22868 0.91207 0.96891 0.99257 1.68088 1.38918 0.97229 1.07011 1.20716 0.88229 0.93187 1.06720 1.17267 0.80924 0.87193 0.77949 1.90788 1.71169 1.27696 1.51389 1.48308 1.04049 1.09912 1.70294 1.23302 0.92371 0.84774 1.02653 1.21331 0.89560 0.88014 0.94869 0.91988 1.42493 1.61245 1.20740 1.10841 1.19207 1.26498 0.96004 0.95286 0.91166 1.24717 1.01205 0.98975 0.95800 1.69647 1.45329 1.38127 1.04968 0.86285 0.78738 0.83693 0.77551 1.21322 1.21830 1.21284 1.22014 0.93435 0.96964 0.96364 1.21631 1.02807 1.00731 0.93669 1.21644 0.97799 0.98703 1.00458 1.22365 0.88603 0.89090 1.00357 0.92482 0.91682 0.92461 0.90556 0.90529 0.92049 0.92087 0.84001 0.84145 0.81644 0.90100 0.91936 0.77420 0.93473 0.90930 0.93425 0.92782 0.92867 0.93194 0.91367 0.91652 0.90893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.91 37.16 0.37 -0.50 16 2 C -0.12 -1.04 6.30 -26.73 -0.17 -1.20 16 3 C 0.05 0.47 4.76 37.16 0.18 0.65 16 4 O -0.27 -3.90 8.20 -40.59 -0.33 -4.24 16 5 C 0.13 1.94 6.71 -38.55 -0.26 1.68 16 6 C -0.18 -1.93 9.13 -39.14 -0.36 -2.29 16 7 C -0.11 -1.10 10.10 -39.36 -0.40 -1.50 16 8 C 0.06 0.74 11.17 -17.55 -0.20 0.54 16 9 N -0.40 -6.54 6.84 -9.71 -0.07 -6.61 16 10 C 0.05 0.86 6.73 -82.88 -0.56 0.30 16 11 C 0.58 10.96 7.83 -12.34 -0.10 10.86 16 12 O -0.53 -10.95 15.39 -16.63 -0.26 -11.21 16 13 N -0.59 -10.80 3.31 -171.50 -0.57 -11.37 16 14 C 0.09 1.81 4.83 -3.07 -0.01 1.80 16 15 C 0.17 3.45 2.84 -66.10 -0.19 3.26 16 16 H 0.06 1.24 8.02 -51.93 -0.42 0.82 16 17 N -0.71 -17.09 5.08 -51.65 -0.26 -17.35 16 18 C -0.24 -6.38 9.98 -15.06 -0.15 -6.53 16 19 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 20 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 21 N -0.93 -27.41 13.06 55.49 0.72 -26.69 16 22 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 C -0.09 -1.45 0.87 -152.24 -0.13 -1.58 16 27 C -0.13 -2.27 7.95 37.16 0.30 -1.97 16 28 C -0.13 -1.92 8.68 37.16 0.32 -1.59 16 29 C 0.12 1.95 5.85 -2.41 -0.01 1.93 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.49 7.70 -51.93 -0.40 0.09 16 36 H 0.06 0.47 7.70 -51.93 -0.40 0.07 16 37 H 0.14 1.06 6.46 -52.49 -0.34 0.72 16 38 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.17 1.78 8.06 -52.49 -0.42 1.35 16 40 H 0.08 1.73 7.29 -51.93 -0.38 1.36 16 41 H 0.06 1.21 7.53 -51.93 -0.39 0.82 16 42 H 0.39 9.88 5.28 -40.82 -0.22 9.67 16 43 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.07 1.39 6.35 -51.93 -0.33 1.06 16 45 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.05 1.00 7.91 -51.93 -0.41 0.59 16 47 H 0.05 0.73 8.07 -51.93 -0.42 0.31 16 48 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 49 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 50 H 0.07 1.00 7.99 -51.93 -0.41 0.58 16 51 H 0.07 1.19 7.95 -51.93 -0.41 0.78 16 LS Contribution 407.55 15.07 6.14 6.14 Total: -1.00 -32.60 407.55 -9.41 -42.01 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -8.30 Total: 8.94 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -1.47 Total: 3.46 kcal Atomic # 7 Polarization: -61.84 SS G_CDS: -0.17 Total: -62.01 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.59 Total: -15.44 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.60 -9.41 -42.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996222682.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.647 kcal (2) G-P(sol) polarization free energy of solvation -32.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds