Wall clock time and date at job start Wed Apr 1 2020 04:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 O 1.42900 * 109.47616 * 179.97438 * 3 2 1 5 5 C 1.35647 * 117.00279 * 180.02562 * 4 3 2 6 6 C 1.39346 * 120.53790 * 0.02562 * 5 4 3 7 7 C 1.38308 * 118.43690 * 180.02562 * 6 5 4 8 8 C 1.38765 * 119.44526 * 359.97438 * 7 6 5 9 9 N 1.31376 * 121.06626 * 359.97438 * 8 7 6 10 10 C 1.32855 * 121.69916 * 359.73788 * 9 8 7 11 11 C 1.47829 * 119.78741 * 180.26819 * 10 9 8 12 12 O 1.21554 * 120.00554 * 180.27297 * 11 10 9 13 13 N 1.34774 * 119.99773 * 0.27721 * 11 10 9 14 14 C 1.47024 * 125.65353 * 0.02562 * 13 11 10 15 15 C 1.54320 * 107.27524 * 181.02294 * 14 13 11 16 16 H 1.08997 * 110.72247 * 263.82886 * 15 14 13 17 17 N 1.46498 * 110.72005 * 140.73340 * 15 14 13 18 18 C 1.36935 * 120.00014 * 86.45270 * 17 15 14 19 19 H 1.08000 * 119.99803 * 0.02562 * 18 17 15 20 20 C 1.38814 * 120.00091 * 179.97438 * 18 17 15 21 21 N 1.31623 * 120.00110 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00039 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47033 * 60.00396 * 22 20 18 24 24 H 1.48497 * 109.46983 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47024 * 300.00183 * 22 20 18 26 26 C 1.55159 * 102.93989 * 22.19419 * 15 14 13 27 27 C 1.53003 * 111.00270 * 82.57370 * 26 15 14 28 28 C 1.53005 * 111.00217 * 206.38369 * 26 15 14 29 29 C 1.47429 * 125.64902 * 179.71208 * 13 11 10 30 30 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 33 33 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 34 34 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 35 35 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 36 36 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 37 37 H 1.07993 * 120.78426 * 359.97438 * 6 5 4 38 38 H 1.07997 * 120.27641 * 179.97438 * 7 6 5 39 39 H 1.07998 * 119.46676 * 179.97438 * 8 7 6 40 40 H 1.08999 * 109.87713 * 300.44735 * 14 13 11 41 41 H 1.08998 * 109.88037 * 61.44627 * 14 13 11 42 42 H 0.97002 * 120.00352 * 266.45823 * 17 15 14 43 43 H 0.96999 * 119.99945 * 179.97438 * 21 20 18 44 44 H 1.08993 * 109.47540 * 60.00178 * 27 26 15 45 45 H 1.09003 * 109.46823 * 180.02562 * 27 26 15 46 46 H 1.08998 * 109.46714 * 299.99308 * 27 26 15 47 47 H 1.08992 * 109.47101 * 60.00032 * 28 26 15 48 48 H 1.08999 * 109.46853 * 180.02562 * 28 26 15 49 49 H 1.08999 * 109.46917 * 299.99800 * 28 26 15 50 50 H 1.08997 * 110.37035 * 274.74935 * 29 13 11 51 51 H 1.09007 * 110.36317 * 37.07233 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0848 2.6512 0.0012 6 6 3.3369 3.8269 0.0018 7 6 4.0096 5.0354 0.0019 8 6 5.3972 5.0437 0.0019 9 7 6.0819 3.9225 0.0024 10 6 5.4810 2.7376 0.0080 11 6 6.2931 1.5024 0.0143 12 8 5.7475 0.4162 0.0145 13 7 7.6386 1.5806 0.0200 14 6 8.4248 2.8229 0.0212 15 6 9.9149 2.4222 0.0020 16 1 10.3267 2.4201 1.0112 17 7 10.6816 3.3188 -0.8666 18 6 11.1832 4.4915 -0.3682 19 1 11.0138 4.7552 0.6653 20 6 11.9101 5.3408 -1.1912 21 7 12.1169 5.0192 -2.4506 22 14 12.5949 6.9402 -0.5111 23 1 13.5237 6.6444 0.6091 24 1 13.3260 7.6613 -1.5838 25 1 11.4787 7.7867 -0.0183 26 6 9.8807 0.9844 -0.5800 27 6 9.8095 1.0129 -2.1081 28 6 11.0869 0.1716 -0.1052 29 6 8.5658 0.4345 0.0326 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.6766 1.9564 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 2.2574 3.7953 0.0013 38 1 3.4594 5.9647 0.0019 39 1 5.9228 5.9872 0.0016 40 1 8.1879 3.4123 -0.8646 41 1 8.2051 3.3998 0.9196 42 1 10.8340 3.0818 -1.7948 43 1 12.6245 5.6128 -3.0257 44 1 10.6846 1.5289 -2.5031 45 1 9.7862 -0.0079 -2.4898 46 1 8.9066 1.5377 -2.4200 47 1 11.0769 0.1085 0.9829 48 1 11.0382 -0.8317 -0.5282 49 1 12.0051 0.6593 -0.4324 50 1 8.7340 0.0937 1.0542 51 1 8.1734 -0.3777 -0.5793 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996222682.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:31 Heat of formation + Delta-G solvation = -35.276307 kcal Electronic energy + Delta-G solvation = -31576.640002 eV Core-core repulsion = 27476.263526 eV Total energy + Delta-G solvation = -4100.376475 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.06515 -40.90176 -39.38577 -39.03388 -35.82287 -34.94635 -34.60700 -33.25561 -32.59717 -31.57085 -29.10221 -28.31509 -27.91648 -27.51451 -25.83279 -25.25195 -23.95373 -22.94924 -22.32830 -20.97844 -20.11741 -19.11274 -19.09515 -18.47063 -17.78695 -17.47026 -17.06035 -16.88795 -16.34348 -15.99625 -15.72385 -15.56854 -15.42426 -15.19339 -14.82570 -14.75074 -14.45430 -14.24449 -14.17296 -13.75772 -13.69927 -13.41643 -13.31010 -13.04596 -12.97794 -12.94269 -12.79730 -12.77438 -12.54885 -12.48314 -12.12399 -12.07111 -11.94985 -11.86317 -11.63762 -11.48124 -11.33818 -11.14581 -10.93022 -10.84284 -10.42728 -9.73170 -9.38809 -8.96605 -7.88175 -5.16531 -0.36552 0.21295 1.51720 1.54021 1.59874 1.72987 1.92520 2.06085 2.61264 2.80970 3.12437 3.41975 3.50932 3.57360 3.69013 3.83522 3.87969 3.90464 3.93621 4.00475 4.10988 4.20486 4.24795 4.35512 4.44669 4.47086 4.50226 4.51659 4.52378 4.65439 4.75464 4.82140 4.85444 4.86860 4.97630 5.02113 5.06562 5.11169 5.12044 5.15602 5.22770 5.29271 5.31649 5.35963 5.44019 5.44836 5.56300 5.60440 6.21708 6.32794 6.49493 6.76297 7.15695 7.40822 8.13678 8.39453 9.34948 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013222 B = 0.003021 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.104221 B = 9265.057536 C =10946.464479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.123 4.123 3 C 0.042 3.958 4 O -0.302 6.302 5 C 0.129 3.871 6 C -0.171 4.171 7 C -0.084 4.084 8 C 0.043 3.957 9 N -0.436 5.436 10 C 0.004 3.996 11 C 0.573 3.427 12 O -0.559 6.559 13 N -0.598 5.598 14 C 0.120 3.880 15 C 0.168 3.832 16 H 0.064 0.936 17 N -0.719 5.719 18 C -0.235 4.235 19 H 0.076 0.924 20 C -0.071 4.071 21 N -0.969 5.969 22 Si 0.969 3.031 23 H -0.279 1.279 24 H -0.299 1.299 25 H -0.278 1.278 26 C -0.077 4.077 27 C -0.123 4.123 28 C -0.123 4.123 29 C 0.120 3.880 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.182 0.818 38 H 0.189 0.811 39 H 0.181 0.819 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.380 0.620 43 H 0.250 0.750 44 H 0.051 0.949 45 H 0.073 0.927 46 H 0.033 0.967 47 H 0.067 0.933 48 H 0.074 0.926 49 H 0.049 0.951 50 H 0.082 0.918 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.825 -5.463 6.197 24.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.160 4.160 3 C -0.033 4.033 4 O -0.213 6.213 5 C 0.078 3.922 6 C -0.197 4.197 7 C -0.103 4.103 8 C -0.119 4.119 9 N -0.148 5.148 10 C -0.133 4.133 11 C 0.362 3.638 12 O -0.439 6.439 13 N -0.329 5.329 14 C -0.006 4.006 15 C 0.057 3.943 16 H 0.082 0.918 17 N -0.361 5.361 18 C -0.367 4.367 19 H 0.093 0.907 20 C -0.263 4.263 21 N -0.619 5.619 22 Si 0.799 3.201 23 H -0.206 1.206 24 H -0.226 1.226 25 H -0.204 1.204 26 C -0.078 4.078 27 C -0.181 4.181 28 C -0.180 4.180 29 C -0.002 4.002 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.199 0.801 38 H 0.206 0.794 39 H 0.198 0.802 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.215 0.785 43 H 0.058 0.942 44 H 0.069 0.931 45 H 0.092 0.908 46 H 0.052 0.948 47 H 0.086 0.914 48 H 0.093 0.907 49 H 0.068 0.932 50 H 0.100 0.900 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -22.134 -6.153 6.303 23.822 hybrid contribution -0.212 1.140 -0.328 1.205 sum -22.346 -5.012 5.975 23.668 Atomic orbital electron populations 1.21662 0.91960 1.03242 1.03027 1.21477 0.97560 0.94112 1.02885 1.23341 0.76693 1.00228 1.02998 1.86368 1.23121 1.25427 1.86416 1.20146 0.91683 0.86880 0.93494 1.22137 1.02478 0.90529 1.04555 1.22684 0.94695 0.99931 0.93007 1.23328 0.93006 0.96340 0.99213 1.67925 1.40558 0.98000 1.08283 1.20472 0.89380 0.92595 1.10867 1.17750 0.80995 0.87987 0.77071 1.90745 1.71525 1.28862 1.52744 1.48336 1.04306 1.09783 1.70506 1.22801 0.91864 0.84902 1.01061 1.21496 0.89162 0.89224 0.94411 0.91840 1.42594 1.61735 1.20822 1.10912 1.19562 1.25197 0.96553 0.95390 0.90658 1.25469 1.02460 1.02255 0.96163 1.69809 1.46745 1.39196 1.06197 0.85276 0.78124 0.80035 0.76705 1.20556 1.22582 1.20408 1.21963 0.94799 0.95253 0.95829 1.21545 1.00673 1.01674 0.94181 1.21606 0.95579 0.99333 1.01503 1.22444 0.87788 0.88690 1.01299 0.91333 0.91238 0.91466 0.91926 0.92105 0.90152 0.89936 0.80078 0.79399 0.80234 0.92742 0.92502 0.78475 0.94172 0.93053 0.90815 0.94813 0.91423 0.90666 0.93235 0.90023 0.90577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.91 71.98 0.71 -0.64 16 2 C -0.12 -1.98 6.30 30.59 0.19 -1.79 16 3 C 0.04 0.71 4.76 71.98 0.34 1.05 16 4 O -0.30 -8.61 8.20 -68.62 -0.56 -9.17 16 5 C 0.13 3.62 6.71 22.94 0.15 3.78 16 6 C -0.17 -3.10 9.13 22.55 0.21 -2.89 16 7 C -0.08 -1.37 10.10 22.41 0.23 -1.14 16 8 C 0.04 1.04 11.17 84.89 0.95 1.99 16 9 N -0.44 -14.48 6.84 -184.63 -1.26 -15.74 16 10 C 0.00 0.13 6.73 41.93 0.28 0.41 16 11 C 0.57 22.50 7.83 86.78 0.68 23.17 16 12 O -0.56 -23.79 15.39 17.10 0.26 -23.53 16 13 N -0.60 -22.40 3.31 -814.77 -2.70 -25.10 16 14 C 0.12 4.76 4.83 86.73 0.42 5.18 16 15 C 0.17 6.77 2.84 46.18 0.13 6.90 16 16 H 0.06 2.55 8.02 -2.39 -0.02 2.53 16 17 N -0.72 -35.59 5.08 -317.34 -1.61 -37.20 16 18 C -0.24 -12.75 9.98 84.03 0.84 -11.91 16 19 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 20 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 21 N -0.97 -58.50 13.06 21.65 0.28 -58.22 16 22 Si 0.97 45.52 29.55 68.60 2.03 47.55 16 23 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 24 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 25 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 26 C -0.08 -2.60 0.87 -50.71 -0.04 -2.64 16 27 C -0.12 -4.36 7.95 71.98 0.57 -3.79 16 28 C -0.12 -3.52 8.68 71.98 0.62 -2.90 16 29 C 0.12 3.92 5.85 86.93 0.51 4.43 16 30 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 33 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.08 1.04 7.70 -2.39 -0.02 1.02 16 36 H 0.08 1.03 7.70 -2.39 -0.02 1.01 16 37 H 0.18 1.78 6.46 -2.91 -0.02 1.76 16 38 H 0.19 1.29 8.06 -2.91 -0.02 1.27 16 39 H 0.18 3.61 8.06 -2.91 -0.02 3.59 16 40 H 0.05 2.46 7.29 -2.39 -0.02 2.45 16 41 H 0.06 2.30 7.53 -2.39 -0.02 2.28 16 42 H 0.38 20.12 5.28 -92.71 -0.49 19.63 16 43 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 44 H 0.05 2.04 6.35 -2.39 -0.02 2.02 16 45 H 0.07 2.18 8.14 -2.39 -0.02 2.17 16 46 H 0.03 1.30 7.91 -2.39 -0.02 1.28 16 47 H 0.07 1.74 8.07 -2.39 -0.02 1.72 16 48 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 49 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 50 H 0.08 2.41 7.99 -2.39 -0.02 2.39 16 51 H 0.08 2.46 7.95 -2.38 -0.02 2.44 16 Total: -1.00 -74.65 407.55 4.13 -70.52 By element: Atomic # 1 Polarization: 34.80 SS G_CDS: 0.43 Total: 35.24 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: 7.26 Total: 15.65 kcal Atomic # 7 Polarization: -130.97 SS G_CDS: -5.29 Total: -136.26 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -0.30 Total: -32.70 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -74.65 4.13 -70.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996222682.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.243 kcal (2) G-P(sol) polarization free energy of solvation -74.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds