Wall clock time and date at job start Wed Apr 1 2020 04:57:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52999 * 109.47317 * 2 1
4 4 O 1.42900 * 109.47616 * 179.97438 * 3 2 1
5 5 C 1.35647 * 117.00279 * 180.02562 * 4 3 2
6 6 C 1.39346 * 120.53790 * 0.02562 * 5 4 3
7 7 C 1.38308 * 118.43690 * 180.02562 * 6 5 4
8 8 C 1.38765 * 119.44526 * 359.97438 * 7 6 5
9 9 N 1.31376 * 121.06626 * 359.97438 * 8 7 6
10 10 C 1.32855 * 121.69916 * 359.73788 * 9 8 7
11 11 C 1.47829 * 119.78741 * 180.26819 * 10 9 8
12 12 O 1.21554 * 120.00554 * 180.27297 * 11 10 9
13 13 N 1.34774 * 119.99773 * 0.27721 * 11 10 9
14 14 C 1.47024 * 125.65353 * 0.02562 * 13 11 10
15 15 C 1.54320 * 107.27524 * 181.02294 * 14 13 11
16 16 H 1.08997 * 110.72247 * 263.82886 * 15 14 13
17 17 N 1.46498 * 110.72005 * 140.73340 * 15 14 13
18 18 C 1.36935 * 120.00014 * 86.45270 * 17 15 14
19 19 H 1.08000 * 119.99803 * 0.02562 * 18 17 15
20 20 C 1.38814 * 120.00091 * 179.97438 * 18 17 15
21 21 N 1.31623 * 120.00110 * 0.02562 * 20 18 17
22 22 Si 1.86801 * 120.00039 * 180.02562 * 20 18 17
23 23 H 1.48501 * 109.47033 * 60.00396 * 22 20 18
24 24 H 1.48497 * 109.46983 * 180.02562 * 22 20 18
25 25 H 1.48497 * 109.47024 * 300.00183 * 22 20 18
26 26 C 1.55159 * 102.93989 * 22.19419 * 15 14 13
27 27 C 1.53003 * 111.00270 * 82.57370 * 26 15 14
28 28 C 1.53005 * 111.00217 * 206.38369 * 26 15 14
29 29 C 1.47429 * 125.64902 * 179.71208 * 13 11 10
30 30 H 1.09002 * 109.47153 * 299.99641 * 1 2 3
31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3
32 32 H 1.09004 * 109.47261 * 59.99813 * 1 2 3
33 33 H 1.08996 * 109.47853 * 120.00331 * 2 1 3
34 34 H 1.09002 * 109.47153 * 240.00359 * 2 1 3
35 35 H 1.09001 * 109.47362 * 300.00732 * 3 2 1
36 36 H 1.09002 * 109.46716 * 60.00091 * 3 2 1
37 37 H 1.07993 * 120.78426 * 359.97438 * 6 5 4
38 38 H 1.07997 * 120.27641 * 179.97438 * 7 6 5
39 39 H 1.07998 * 119.46676 * 179.97438 * 8 7 6
40 40 H 1.08999 * 109.87713 * 300.44735 * 14 13 11
41 41 H 1.08998 * 109.88037 * 61.44627 * 14 13 11
42 42 H 0.97002 * 120.00352 * 266.45823 * 17 15 14
43 43 H 0.96999 * 119.99945 * 179.97438 * 21 20 18
44 44 H 1.08993 * 109.47540 * 60.00178 * 27 26 15
45 45 H 1.09003 * 109.46823 * 180.02562 * 27 26 15
46 46 H 1.08998 * 109.46714 * 299.99308 * 27 26 15
47 47 H 1.08992 * 109.47101 * 60.00032 * 28 26 15
48 48 H 1.08999 * 109.46853 * 180.02562 * 28 26 15
49 49 H 1.08999 * 109.46917 * 299.99800 * 28 26 15
50 50 H 1.08997 * 110.37035 * 274.74935 * 29 13 11
51 51 H 1.09007 * 110.36317 * 37.07233 * 29 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 8 3.4690 1.4425 0.0006
5 6 4.0848 2.6512 0.0012
6 6 3.3369 3.8269 0.0018
7 6 4.0096 5.0354 0.0019
8 6 5.3972 5.0437 0.0019
9 7 6.0819 3.9225 0.0024
10 6 5.4810 2.7376 0.0080
11 6 6.2931 1.5024 0.0143
12 8 5.7475 0.4162 0.0145
13 7 7.6386 1.5806 0.0200
14 6 8.4248 2.8229 0.0212
15 6 9.9149 2.4222 0.0020
16 1 10.3267 2.4201 1.0112
17 7 10.6816 3.3188 -0.8666
18 6 11.1832 4.4915 -0.3682
19 1 11.0138 4.7552 0.6653
20 6 11.9101 5.3408 -1.1912
21 7 12.1169 5.0192 -2.4506
22 14 12.5949 6.9402 -0.5111
23 1 13.5237 6.6444 0.6091
24 1 13.3260 7.6613 -1.5838
25 1 11.4787 7.7867 -0.0183
26 6 9.8807 0.9844 -0.5800
27 6 9.8095 1.0129 -2.1081
28 6 11.0869 0.1716 -0.1052
29 6 8.5658 0.4345 0.0326
30 1 -0.3633 0.5138 0.8900
31 1 -0.3633 -1.0277 -0.0005
32 1 -0.3634 0.5139 -0.8900
33 1 1.8934 -0.5138 0.8899
34 1 1.8933 -0.5138 -0.8900
35 1 1.6766 1.9564 -0.8899
36 1 1.6767 1.9563 0.8900
37 1 2.2574 3.7953 0.0013
38 1 3.4594 5.9647 0.0019
39 1 5.9228 5.9872 0.0016
40 1 8.1879 3.4123 -0.8646
41 1 8.2051 3.3998 0.9196
42 1 10.8340 3.0818 -1.7948
43 1 12.6245 5.6128 -3.0257
44 1 10.6846 1.5289 -2.5031
45 1 9.7862 -0.0079 -2.4898
46 1 8.9066 1.5377 -2.4200
47 1 11.0769 0.1085 0.9829
48 1 11.0382 -0.8317 -0.5282
49 1 12.0051 0.6593 -0.4324
50 1 8.7340 0.0937 1.0542
51 1 8.1734 -0.3777 -0.5793
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000996222682.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:57:31
Heat of formation + Delta-G solvation = -35.276307 kcal
Electronic energy + Delta-G solvation = -31576.640002 eV
Core-core repulsion = 27476.263526 eV
Total energy + Delta-G solvation = -4100.376475 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-42.06515 -40.90176 -39.38577 -39.03388 -35.82287 -34.94635 -34.60700 -33.25561
-32.59717 -31.57085 -29.10221 -28.31509 -27.91648 -27.51451 -25.83279 -25.25195
-23.95373 -22.94924 -22.32830 -20.97844 -20.11741 -19.11274 -19.09515 -18.47063
-17.78695 -17.47026 -17.06035 -16.88795 -16.34348 -15.99625 -15.72385 -15.56854
-15.42426 -15.19339 -14.82570 -14.75074 -14.45430 -14.24449 -14.17296 -13.75772
-13.69927 -13.41643 -13.31010 -13.04596 -12.97794 -12.94269 -12.79730 -12.77438
-12.54885 -12.48314 -12.12399 -12.07111 -11.94985 -11.86317 -11.63762 -11.48124
-11.33818 -11.14581 -10.93022 -10.84284 -10.42728 -9.73170 -9.38809 -8.96605
-7.88175 -5.16531 -0.36552 0.21295 1.51720 1.54021 1.59874 1.72987
1.92520 2.06085 2.61264 2.80970 3.12437 3.41975 3.50932 3.57360
3.69013 3.83522 3.87969 3.90464 3.93621 4.00475 4.10988 4.20486
4.24795 4.35512 4.44669 4.47086 4.50226 4.51659 4.52378 4.65439
4.75464 4.82140 4.85444 4.86860 4.97630 5.02113 5.06562 5.11169
5.12044 5.15602 5.22770 5.29271 5.31649 5.35963 5.44019 5.44836
5.56300 5.60440 6.21708 6.32794 6.49493 6.76297 7.15695 7.40822
8.13678 8.39453 9.34948
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.013222 B = 0.003021 C = 0.002557
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2117.104221 B = 9265.057536 C =10946.464479
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.123 4.123
3 C 0.042 3.958
4 O -0.302 6.302
5 C 0.129 3.871
6 C -0.171 4.171
7 C -0.084 4.084
8 C 0.043 3.957
9 N -0.436 5.436
10 C 0.004 3.996
11 C 0.573 3.427
12 O -0.559 6.559
13 N -0.598 5.598
14 C 0.120 3.880
15 C 0.168 3.832
16 H 0.064 0.936
17 N -0.719 5.719
18 C -0.235 4.235
19 H 0.076 0.924
20 C -0.071 4.071
21 N -0.969 5.969
22 Si 0.969 3.031
23 H -0.279 1.279
24 H -0.299 1.299
25 H -0.278 1.278
26 C -0.077 4.077
27 C -0.123 4.123
28 C -0.123 4.123
29 C 0.120 3.880
30 H 0.068 0.932
31 H 0.069 0.931
32 H 0.066 0.934
33 H 0.062 0.938
34 H 0.060 0.940
35 H 0.080 0.920
36 H 0.083 0.917
37 H 0.182 0.818
38 H 0.189 0.811
39 H 0.181 0.819
40 H 0.054 0.946
41 H 0.057 0.943
42 H 0.380 0.620
43 H 0.250 0.750
44 H 0.051 0.949
45 H 0.073 0.927
46 H 0.033 0.967
47 H 0.067 0.933
48 H 0.074 0.926
49 H 0.049 0.951
50 H 0.082 0.918
51 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.825 -5.463 6.197 24.274
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.160 4.160
3 C -0.033 4.033
4 O -0.213 6.213
5 C 0.078 3.922
6 C -0.197 4.197
7 C -0.103 4.103
8 C -0.119 4.119
9 N -0.148 5.148
10 C -0.133 4.133
11 C 0.362 3.638
12 O -0.439 6.439
13 N -0.329 5.329
14 C -0.006 4.006
15 C 0.057 3.943
16 H 0.082 0.918
17 N -0.361 5.361
18 C -0.367 4.367
19 H 0.093 0.907
20 C -0.263 4.263
21 N -0.619 5.619
22 Si 0.799 3.201
23 H -0.206 1.206
24 H -0.226 1.226
25 H -0.204 1.204
26 C -0.078 4.078
27 C -0.181 4.181
28 C -0.180 4.180
29 C -0.002 4.002
30 H 0.087 0.913
31 H 0.088 0.912
32 H 0.085 0.915
33 H 0.081 0.919
34 H 0.079 0.921
35 H 0.098 0.902
36 H 0.101 0.899
37 H 0.199 0.801
38 H 0.206 0.794
39 H 0.198 0.802
40 H 0.073 0.927
41 H 0.075 0.925
42 H 0.215 0.785
43 H 0.058 0.942
44 H 0.069 0.931
45 H 0.092 0.908
46 H 0.052 0.948
47 H 0.086 0.914
48 H 0.093 0.907
49 H 0.068 0.932
50 H 0.100 0.900
51 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -22.134 -6.153 6.303 23.822
hybrid contribution -0.212 1.140 -0.328 1.205
sum -22.346 -5.012 5.975 23.668
Atomic orbital electron populations
1.21662 0.91960 1.03242 1.03027 1.21477 0.97560 0.94112 1.02885
1.23341 0.76693 1.00228 1.02998 1.86368 1.23121 1.25427 1.86416
1.20146 0.91683 0.86880 0.93494 1.22137 1.02478 0.90529 1.04555
1.22684 0.94695 0.99931 0.93007 1.23328 0.93006 0.96340 0.99213
1.67925 1.40558 0.98000 1.08283 1.20472 0.89380 0.92595 1.10867
1.17750 0.80995 0.87987 0.77071 1.90745 1.71525 1.28862 1.52744
1.48336 1.04306 1.09783 1.70506 1.22801 0.91864 0.84902 1.01061
1.21496 0.89162 0.89224 0.94411 0.91840 1.42594 1.61735 1.20822
1.10912 1.19562 1.25197 0.96553 0.95390 0.90658 1.25469 1.02460
1.02255 0.96163 1.69809 1.46745 1.39196 1.06197 0.85276 0.78124
0.80035 0.76705 1.20556 1.22582 1.20408 1.21963 0.94799 0.95253
0.95829 1.21545 1.00673 1.01674 0.94181 1.21606 0.95579 0.99333
1.01503 1.22444 0.87788 0.88690 1.01299 0.91333 0.91238 0.91466
0.91926 0.92105 0.90152 0.89936 0.80078 0.79399 0.80234 0.92742
0.92502 0.78475 0.94172 0.93053 0.90815 0.94813 0.91423 0.90666
0.93235 0.90023 0.90577
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.35 9.91 71.98 0.71 -0.64 16
2 C -0.12 -1.98 6.30 30.59 0.19 -1.79 16
3 C 0.04 0.71 4.76 71.98 0.34 1.05 16
4 O -0.30 -8.61 8.20 -68.62 -0.56 -9.17 16
5 C 0.13 3.62 6.71 22.94 0.15 3.78 16
6 C -0.17 -3.10 9.13 22.55 0.21 -2.89 16
7 C -0.08 -1.37 10.10 22.41 0.23 -1.14 16
8 C 0.04 1.04 11.17 84.89 0.95 1.99 16
9 N -0.44 -14.48 6.84 -184.63 -1.26 -15.74 16
10 C 0.00 0.13 6.73 41.93 0.28 0.41 16
11 C 0.57 22.50 7.83 86.78 0.68 23.17 16
12 O -0.56 -23.79 15.39 17.10 0.26 -23.53 16
13 N -0.60 -22.40 3.31 -814.77 -2.70 -25.10 16
14 C 0.12 4.76 4.83 86.73 0.42 5.18 16
15 C 0.17 6.77 2.84 46.18 0.13 6.90 16
16 H 0.06 2.55 8.02 -2.39 -0.02 2.53 16
17 N -0.72 -35.59 5.08 -317.34 -1.61 -37.20 16
18 C -0.24 -12.75 9.98 84.03 0.84 -11.91 16
19 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16
20 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16
21 N -0.97 -58.50 13.06 21.65 0.28 -58.22 16
22 Si 0.97 45.52 29.55 68.60 2.03 47.55 16
23 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16
24 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16
25 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16
26 C -0.08 -2.60 0.87 -50.71 -0.04 -2.64 16
27 C -0.12 -4.36 7.95 71.98 0.57 -3.79 16
28 C -0.12 -3.52 8.68 71.98 0.62 -2.90 16
29 C 0.12 3.92 5.85 86.93 0.51 4.43 16
30 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16
31 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16
32 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16
33 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16
34 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16
35 H 0.08 1.04 7.70 -2.39 -0.02 1.02 16
36 H 0.08 1.03 7.70 -2.39 -0.02 1.01 16
37 H 0.18 1.78 6.46 -2.91 -0.02 1.76 16
38 H 0.19 1.29 8.06 -2.91 -0.02 1.27 16
39 H 0.18 3.61 8.06 -2.91 -0.02 3.59 16
40 H 0.05 2.46 7.29 -2.39 -0.02 2.45 16
41 H 0.06 2.30 7.53 -2.39 -0.02 2.28 16
42 H 0.38 20.12 5.28 -92.71 -0.49 19.63 16
43 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16
44 H 0.05 2.04 6.35 -2.39 -0.02 2.02 16
45 H 0.07 2.18 8.14 -2.39 -0.02 2.17 16
46 H 0.03 1.30 7.91 -2.39 -0.02 1.28 16
47 H 0.07 1.74 8.07 -2.39 -0.02 1.72 16
48 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16
49 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16
50 H 0.08 2.41 7.99 -2.39 -0.02 2.39 16
51 H 0.08 2.46 7.95 -2.38 -0.02 2.44 16
Total: -1.00 -74.65 407.55 4.13 -70.52
By element:
Atomic # 1 Polarization: 34.80 SS G_CDS: 0.43 Total: 35.24 kcal
Atomic # 6 Polarization: 8.39 SS G_CDS: 7.26 Total: 15.65 kcal
Atomic # 7 Polarization: -130.97 SS G_CDS: -5.29 Total: -136.26 kcal
Atomic # 8 Polarization: -32.40 SS G_CDS: -0.30 Total: -32.70 kcal
Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal
Total: -74.65 4.13 -70.52 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000996222682.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 35.243 kcal
(2) G-P(sol) polarization free energy of solvation -74.654 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.411 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.134 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.519 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.276 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds