Wall clock time and date at job start Wed Apr 1 2020 04:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.47031 * 2 1 4 4 O 1.42896 * 109.47176 * 119.99457 * 2 1 3 5 5 C 1.35668 * 117.00034 * 90.00042 * 4 2 1 6 6 C 1.39282 * 119.62001 * 179.97438 * 5 4 2 7 7 C 1.38330 * 119.30379 * 179.72353 * 6 5 4 8 8 C 1.38781 * 118.56081 * 0.28078 * 7 6 5 9 9 C 1.39128 * 119.18857 * 359.97438 * 8 7 6 10 10 C 1.48144 * 119.68853 * 179.97438 * 9 8 7 11 11 O 1.21518 * 120.00386 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00216 * 180.02562 * 10 9 8 13 13 C 1.47023 * 125.64323 * 0.02562 * 12 10 9 14 14 C 1.54324 * 107.26964 * 181.02359 * 13 12 10 15 15 H 1.09007 * 110.71974 * 140.73871 * 14 13 12 16 16 N 1.46503 * 110.72095 * 263.82946 * 14 13 12 17 17 C 1.36938 * 120.00200 * 273.55136 * 16 14 13 18 18 H 1.07998 * 119.99705 * 359.97438 * 17 16 14 19 19 C 1.38815 * 120.00033 * 180.02562 * 17 16 14 20 20 N 1.31620 * 119.99816 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00001 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47151 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47153 * 119.99463 * 21 19 17 24 24 H 1.48495 * 109.47038 * 239.99647 * 21 19 17 25 25 C 1.55154 * 102.94284 * 22.19363 * 14 13 12 26 26 C 1.52995 * 111.00065 * 82.57206 * 25 14 13 27 27 C 1.52996 * 111.00441 * 206.38401 * 25 14 13 28 28 C 1.47420 * 125.65205 * 179.72050 * 12 10 9 29 29 N 1.31906 * 119.61363 * 0.32089 * 5 4 2 30 30 H 1.08997 * 109.47331 * 300.00250 * 1 2 3 31 31 H 1.09003 * 109.47047 * 60.00202 * 1 2 3 32 32 H 1.08996 * 109.47077 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47331 * 239.99750 * 2 1 3 34 34 H 1.08996 * 109.47026 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.47040 * 299.99802 * 3 2 1 36 36 H 1.08997 * 109.47267 * 59.99711 * 3 2 1 37 37 H 1.08002 * 120.34994 * 0.02562 * 6 5 4 38 38 H 1.08006 * 120.71798 * 180.29918 * 7 6 5 39 39 H 1.08007 * 120.40453 * 179.97438 * 8 7 6 40 40 H 1.08997 * 109.88920 * 300.44479 * 13 12 10 41 41 H 1.09001 * 109.88302 * 61.45148 * 13 12 10 42 42 H 0.97001 * 119.99631 * 93.54355 * 16 14 13 43 43 H 0.96996 * 119.99669 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.47383 * 60.00568 * 26 25 14 45 45 H 1.09004 * 109.46829 * 180.02562 * 26 25 14 46 46 H 1.09001 * 109.47691 * 299.99863 * 26 25 14 47 47 H 1.09002 * 109.47292 * 60.00229 * 27 25 14 48 48 H 1.09005 * 109.47161 * 179.97438 * 27 25 14 49 49 H 1.09004 * 109.47575 * 300.00311 * 27 25 14 50 50 H 1.09002 * 110.36730 * 274.74108 * 28 12 10 51 51 H 1.08999 * 110.37073 * 37.06880 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6735 1.1668 5 6 2.2117 -2.0107 1.0654 6 6 2.6760 -2.7216 2.1695 7 6 2.8776 -4.0857 2.0606 8 6 2.6137 -4.7004 0.8446 9 6 2.1568 -3.9301 -0.2200 10 6 1.8721 -4.5747 -1.5231 11 8 2.0374 -5.7710 -1.6583 12 7 1.4299 -3.8344 -2.5589 13 6 1.1879 -2.3844 -2.5341 14 6 0.6665 -1.9829 -3.9300 15 1 -0.1226 -1.2356 -3.8467 16 7 1.7604 -1.4874 -4.7691 17 6 2.1204 -0.1673 -4.7158 18 1 1.5976 0.5087 -4.0554 19 6 3.1565 0.3023 -5.5113 20 7 3.7933 -0.5214 -6.3164 21 14 3.6471 2.1033 -5.4390 22 1 2.7822 2.8131 -4.4626 23 1 5.0661 2.2132 -5.0154 24 1 3.4825 2.7154 -6.7819 25 6 0.1071 -3.3177 -4.4891 26 6 -1.3090 -3.5782 -3.9719 27 6 0.1397 -3.3281 -6.0187 28 6 1.1146 -4.3433 -3.9061 29 7 1.9758 -2.6214 -0.0797 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 3.1300 1.4426 -0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 2.8719 -2.2138 3.1024 38 1 3.2324 -4.6601 2.9036 39 1 2.7611 -5.7638 0.7263 40 1 0.4412 -2.1460 -1.7768 41 1 2.1170 -1.8572 -2.3171 42 1 2.2298 -2.0945 -5.3624 43 1 4.5176 -0.1933 -6.8720 44 1 -1.9652 -2.7661 -4.2847 45 1 -1.6769 -4.5202 -4.3788 46 1 -1.2938 -3.6344 -2.8835 47 1 1.1677 -3.2094 -6.3611 48 1 -0.2575 -4.2752 -6.3842 49 1 -0.4675 -2.5074 -6.4007 50 1 2.0161 -4.3824 -4.5175 51 1 0.6560 -5.3300 -3.8412 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996465015.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:02 Heat of formation + Delta-G solvation = -16.515414 kcal Electronic energy + Delta-G solvation = -32978.008127 eV Core-core repulsion = 28878.445185 eV Total energy + Delta-G solvation = -4099.562942 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.95805 -39.71215 -38.45145 -37.45108 -34.01637 -33.49192 -33.10650 -32.36570 -30.75111 -30.28695 -27.93580 -27.17898 -26.80412 -26.56168 -24.53116 -23.71195 -23.28119 -21.51779 -21.13368 -20.03837 -18.78734 -17.77981 -17.35885 -17.07093 -16.12822 -15.88657 -15.74980 -15.61979 -15.15200 -14.77728 -14.40005 -14.17771 -13.93229 -13.86129 -13.59944 -13.44528 -13.04113 -12.92919 -12.64016 -12.43824 -12.32791 -12.26391 -12.16086 -11.97990 -11.87410 -11.78066 -11.61850 -11.46093 -11.00387 -10.94270 -10.86894 -10.72899 -10.57341 -10.39324 -10.23963 -10.13256 -10.01706 -9.79237 -9.65778 -9.44299 -8.94581 -8.60931 -8.14906 -7.03728 -5.83741 -3.12805 0.66341 1.21536 2.90375 2.99742 3.21136 3.37721 3.42370 3.46032 3.89323 4.07877 4.51445 4.65672 4.83834 4.90554 4.93461 4.99252 5.05797 5.12591 5.14039 5.25116 5.31720 5.42304 5.49449 5.63466 5.64543 5.76787 5.77313 5.81477 5.83555 5.84430 5.91109 5.95323 5.97836 6.03854 6.14774 6.17999 6.21100 6.22841 6.29190 6.33940 6.37213 6.40410 6.46125 6.67197 6.67882 6.88697 6.93083 7.26018 7.63281 7.66846 7.86183 8.33918 8.37519 9.46132 10.01808 10.36704 11.38701 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008259 B = 0.005118 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3389.302586 B = 5470.050754 C = 7382.645214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.074 3.926 3 C -0.149 4.149 4 O -0.302 6.302 5 C 0.323 3.677 6 C -0.175 4.175 7 C -0.050 4.050 8 C -0.156 4.156 9 C 0.131 3.869 10 C 0.576 3.424 11 O -0.548 6.548 12 N -0.582 5.582 13 C 0.091 3.909 14 C 0.173 3.827 15 H 0.068 0.932 16 N -0.712 5.712 17 C -0.240 4.240 18 H 0.071 0.929 19 C -0.008 4.008 20 N -0.929 5.929 21 Si 0.902 3.098 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.089 4.089 26 C -0.129 4.129 27 C -0.125 4.125 28 C 0.118 3.882 29 N -0.503 5.503 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.102 0.898 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.143 0.857 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.061 0.939 41 H 0.082 0.918 42 H 0.386 0.614 43 H 0.255 0.745 44 H 0.058 0.942 45 H 0.053 0.947 46 H 0.051 0.949 47 H 0.069 0.931 48 H 0.045 0.955 49 H 0.060 0.940 50 H 0.072 0.928 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.355 -4.041 14.295 16.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.019 3.981 3 C -0.206 4.206 4 O -0.210 6.210 5 C 0.142 3.858 6 C -0.196 4.196 7 C -0.075 4.075 8 C -0.177 4.177 9 C -0.007 4.007 10 C 0.363 3.637 11 O -0.426 6.426 12 N -0.312 5.312 13 C -0.035 4.035 14 C 0.060 3.940 15 H 0.086 0.914 16 N -0.354 5.354 17 C -0.371 4.371 18 H 0.089 0.911 19 C -0.205 4.205 20 N -0.577 5.577 21 Si 0.734 3.266 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.091 4.091 26 C -0.187 4.187 27 C -0.182 4.182 28 C -0.004 4.004 29 N -0.229 5.229 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.120 0.880 34 H 0.082 0.918 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.161 0.839 38 H 0.164 0.836 39 H 0.166 0.834 40 H 0.079 0.921 41 H 0.100 0.900 42 H 0.222 0.778 43 H 0.065 0.935 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.088 0.912 48 H 0.064 0.936 49 H 0.079 0.921 50 H 0.091 0.909 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.483 -3.817 13.754 16.116 hybrid contribution 0.889 0.477 0.430 1.096 sum -6.595 -3.340 14.184 15.995 Atomic orbital electron populations 1.22216 0.94914 1.02600 1.02634 1.22572 0.94367 0.93169 0.88041 1.21892 1.02154 0.93717 1.02862 1.86278 1.80021 1.15422 1.39230 1.19860 0.91449 0.85132 0.89358 1.21260 1.04913 0.94415 0.99022 1.21379 0.95245 0.93428 0.97447 1.21924 1.01046 1.02183 0.92554 1.20786 0.97018 0.88278 0.94586 1.17509 0.78191 0.85534 0.82486 1.90752 1.54549 1.14038 1.83298 1.48248 1.62011 1.10463 1.10428 1.23386 1.01743 0.78466 0.99885 1.21362 0.91292 0.92476 0.88823 0.91415 1.42457 1.37213 1.08256 1.47433 1.19215 1.12919 0.85598 1.19366 0.91085 1.24714 0.98891 0.97633 0.99254 1.69659 1.25449 1.33753 1.28819 0.86196 0.78106 0.85069 0.77267 1.20472 1.21948 1.21884 1.22048 0.94315 0.96189 0.96538 1.21672 0.95073 1.01238 1.00673 1.21572 1.03346 1.00583 0.92730 1.22401 0.98388 0.97265 0.82317 1.67551 1.20040 1.11065 1.24231 0.92345 0.90612 0.92222 0.88012 0.91798 0.89985 0.92111 0.83936 0.83627 0.83435 0.92059 0.90024 0.77812 0.93491 0.92300 0.92812 0.92941 0.91190 0.93645 0.92071 0.90933 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 9.28 37.16 0.34 -1.66 16 2 C 0.07 1.02 3.11 -26.73 -0.08 0.94 16 3 C -0.15 -1.85 9.56 37.16 0.36 -1.50 16 4 O -0.30 -4.24 9.76 -18.71 -0.18 -4.42 16 5 C 0.32 4.58 7.46 -17.13 -0.13 4.45 16 6 C -0.18 -1.97 10.05 -39.16 -0.39 -2.36 16 7 C -0.05 -0.51 10.16 -39.35 -0.40 -0.91 16 8 C -0.16 -2.02 9.63 -39.05 -0.38 -2.40 16 9 C 0.13 2.08 6.72 -83.03 -0.56 1.52 16 10 C 0.58 10.43 7.84 -12.19 -0.10 10.34 16 11 O -0.55 -10.84 16.57 5.35 0.09 -10.76 16 12 N -0.58 -10.31 3.31 -171.38 -0.57 -10.88 16 13 C 0.09 1.60 4.15 -3.06 -0.01 1.59 16 14 C 0.17 3.16 2.86 -66.10 -0.19 2.97 16 15 H 0.07 1.23 8.03 -51.93 -0.42 0.81 16 16 N -0.71 -16.28 4.61 -51.65 -0.24 -16.52 16 17 C -0.24 -6.11 9.98 -15.06 -0.15 -6.26 16 18 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 19 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 20 N -0.93 -26.86 13.06 55.49 0.72 -26.13 16 21 Si 0.90 21.39 29.55 -169.99 -5.02 16.36 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 C -0.09 -1.40 0.83 -152.25 -0.13 -1.52 16 26 C -0.13 -1.70 8.59 37.16 0.32 -1.38 16 27 C -0.12 -1.95 8.22 37.16 0.31 -1.65 16 28 C 0.12 2.00 5.82 -2.41 -0.01 1.99 16 29 N -0.50 -7.88 5.23 -9.88 -0.05 -7.93 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.76 7.62 -51.93 -0.40 0.37 16 33 H 0.10 1.66 4.95 -51.93 -0.26 1.40 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 38 H 0.15 0.95 8.06 -52.48 -0.42 0.53 16 39 H 0.15 1.80 7.63 -52.48 -0.40 1.40 16 40 H 0.06 1.01 6.60 -51.93 -0.34 0.66 16 41 H 0.08 1.67 6.24 -51.93 -0.32 1.35 16 42 H 0.39 9.56 6.10 -40.82 -0.25 9.31 16 43 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.05 0.71 7.91 -51.93 -0.41 0.30 16 47 H 0.07 1.27 6.38 -51.93 -0.33 0.94 16 48 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 50 H 0.07 1.33 7.99 -51.93 -0.41 0.92 16 51 H 0.07 1.15 7.95 -51.93 -0.41 0.74 16 LS Contribution 406.11 15.07 6.12 6.12 Total: -1.00 -30.10 406.11 -8.58 -38.68 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -8.15 Total: 11.65 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -1.30 Total: 3.83 kcal Atomic # 7 Polarization: -61.32 SS G_CDS: -0.13 Total: -61.45 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.09 Total: -15.18 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -30.10 -8.58 -38.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996465015.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.161 kcal (2) G-P(sol) polarization free energy of solvation -30.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds