Wall clock time and date at job start Wed Apr 1 2020 04:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.47031 * 2 1 4 4 O 1.42896 * 109.47176 * 119.99457 * 2 1 3 5 5 C 1.35668 * 117.00034 * 90.00042 * 4 2 1 6 6 C 1.39282 * 119.62001 * 179.97438 * 5 4 2 7 7 C 1.38330 * 119.30379 * 179.72353 * 6 5 4 8 8 C 1.38781 * 118.56081 * 0.28078 * 7 6 5 9 9 C 1.39128 * 119.18857 * 359.97438 * 8 7 6 10 10 C 1.48144 * 119.68853 * 179.97438 * 9 8 7 11 11 O 1.21518 * 120.00386 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00216 * 180.02562 * 10 9 8 13 13 C 1.47023 * 125.64323 * 0.02562 * 12 10 9 14 14 C 1.54324 * 107.26964 * 181.02359 * 13 12 10 15 15 H 1.09007 * 110.71974 * 140.73871 * 14 13 12 16 16 N 1.46503 * 110.72095 * 263.82946 * 14 13 12 17 17 C 1.36938 * 120.00200 * 273.55136 * 16 14 13 18 18 H 1.07998 * 119.99705 * 359.97438 * 17 16 14 19 19 C 1.38815 * 120.00033 * 180.02562 * 17 16 14 20 20 N 1.31620 * 119.99816 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00001 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47151 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47153 * 119.99463 * 21 19 17 24 24 H 1.48495 * 109.47038 * 239.99647 * 21 19 17 25 25 C 1.55154 * 102.94284 * 22.19363 * 14 13 12 26 26 C 1.52995 * 111.00065 * 82.57206 * 25 14 13 27 27 C 1.52996 * 111.00441 * 206.38401 * 25 14 13 28 28 C 1.47420 * 125.65205 * 179.72050 * 12 10 9 29 29 N 1.31906 * 119.61363 * 0.32089 * 5 4 2 30 30 H 1.08997 * 109.47331 * 300.00250 * 1 2 3 31 31 H 1.09003 * 109.47047 * 60.00202 * 1 2 3 32 32 H 1.08996 * 109.47077 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47331 * 239.99750 * 2 1 3 34 34 H 1.08996 * 109.47026 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.47040 * 299.99802 * 3 2 1 36 36 H 1.08997 * 109.47267 * 59.99711 * 3 2 1 37 37 H 1.08002 * 120.34994 * 0.02562 * 6 5 4 38 38 H 1.08006 * 120.71798 * 180.29918 * 7 6 5 39 39 H 1.08007 * 120.40453 * 179.97438 * 8 7 6 40 40 H 1.08997 * 109.88920 * 300.44479 * 13 12 10 41 41 H 1.09001 * 109.88302 * 61.45148 * 13 12 10 42 42 H 0.97001 * 119.99631 * 93.54355 * 16 14 13 43 43 H 0.96996 * 119.99669 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.47383 * 60.00568 * 26 25 14 45 45 H 1.09004 * 109.46829 * 180.02562 * 26 25 14 46 46 H 1.09001 * 109.47691 * 299.99863 * 26 25 14 47 47 H 1.09002 * 109.47292 * 60.00229 * 27 25 14 48 48 H 1.09005 * 109.47161 * 179.97438 * 27 25 14 49 49 H 1.09004 * 109.47575 * 300.00311 * 27 25 14 50 50 H 1.09002 * 110.36730 * 274.74108 * 28 12 10 51 51 H 1.08999 * 110.37073 * 37.06880 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6735 1.1668 5 6 2.2117 -2.0107 1.0654 6 6 2.6760 -2.7216 2.1695 7 6 2.8776 -4.0857 2.0606 8 6 2.6137 -4.7004 0.8446 9 6 2.1568 -3.9301 -0.2200 10 6 1.8721 -4.5747 -1.5231 11 8 2.0374 -5.7710 -1.6583 12 7 1.4299 -3.8344 -2.5589 13 6 1.1879 -2.3844 -2.5341 14 6 0.6665 -1.9829 -3.9300 15 1 -0.1226 -1.2356 -3.8467 16 7 1.7604 -1.4874 -4.7691 17 6 2.1204 -0.1673 -4.7158 18 1 1.5976 0.5087 -4.0554 19 6 3.1565 0.3023 -5.5113 20 7 3.7933 -0.5214 -6.3164 21 14 3.6471 2.1033 -5.4390 22 1 2.7822 2.8131 -4.4626 23 1 5.0661 2.2132 -5.0154 24 1 3.4825 2.7154 -6.7819 25 6 0.1071 -3.3177 -4.4891 26 6 -1.3090 -3.5782 -3.9719 27 6 0.1397 -3.3281 -6.0187 28 6 1.1146 -4.3433 -3.9061 29 7 1.9758 -2.6214 -0.0797 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 3.1300 1.4426 -0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 2.8719 -2.2138 3.1024 38 1 3.2324 -4.6601 2.9036 39 1 2.7611 -5.7638 0.7263 40 1 0.4412 -2.1460 -1.7768 41 1 2.1170 -1.8572 -2.3171 42 1 2.2298 -2.0945 -5.3624 43 1 4.5176 -0.1933 -6.8720 44 1 -1.9652 -2.7661 -4.2847 45 1 -1.6769 -4.5202 -4.3788 46 1 -1.2938 -3.6344 -2.8835 47 1 1.1677 -3.2094 -6.3611 48 1 -0.2575 -4.2752 -6.3842 49 1 -0.4675 -2.5074 -6.4007 50 1 2.0161 -4.3824 -4.5175 51 1 0.6560 -5.3300 -3.8412 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996465015.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:01 Heat of formation + Delta-G solvation = -34.579054 kcal Electronic energy + Delta-G solvation = -32978.791425 eV Core-core repulsion = 28878.445185 eV Total energy + Delta-G solvation = -4100.346240 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.09240 -41.01392 -39.67530 -38.71183 -35.75650 -34.85061 -34.18639 -33.44278 -32.58780 -31.34805 -29.46777 -28.16422 -28.09235 -27.89585 -25.91905 -25.26003 -24.36233 -23.02141 -22.17873 -21.25797 -20.24092 -19.09770 -18.90255 -18.47762 -17.28916 -17.11223 -16.90330 -16.85253 -16.45255 -16.39245 -15.80626 -15.49881 -15.39116 -15.15632 -14.72709 -14.59653 -14.51758 -14.13668 -13.95448 -13.78558 -13.51247 -13.27841 -13.23367 -13.13894 -13.06356 -13.05266 -12.87391 -12.85033 -12.79045 -12.64477 -12.14673 -12.03780 -11.97166 -11.88795 -11.62582 -11.50152 -11.44869 -11.23734 -10.98407 -10.97611 -10.48098 -9.79878 -9.47593 -8.97345 -7.90454 -5.17880 -0.40805 0.25922 1.48005 1.48754 1.57701 1.63369 1.88238 2.01193 2.57766 2.78190 2.90904 3.40506 3.43980 3.72461 3.81478 3.88296 3.91826 3.97233 4.01677 4.04738 4.06964 4.20658 4.28941 4.35289 4.46313 4.50390 4.58989 4.67597 4.71509 4.78410 4.83042 4.84846 4.88511 4.88681 4.96582 4.98981 5.05454 5.07907 5.09482 5.12080 5.21740 5.25482 5.30600 5.36163 5.39381 5.41955 5.55705 5.60710 6.19641 6.30544 6.43212 6.60148 7.00491 7.38321 8.11861 8.35946 9.33351 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008259 B = 0.005118 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3389.302586 B = 5470.050754 C = 7382.645214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.072 3.928 3 C -0.146 4.146 4 O -0.305 6.305 5 C 0.300 3.700 6 C -0.160 4.160 7 C -0.033 4.033 8 C -0.151 4.151 9 C 0.095 3.905 10 C 0.570 3.430 11 O -0.572 6.572 12 N -0.587 5.587 13 C 0.114 3.886 14 C 0.165 3.835 15 H 0.076 0.924 16 N -0.721 5.721 17 C -0.225 4.225 18 H 0.082 0.918 19 C -0.072 4.072 20 N -0.970 5.970 21 Si 0.960 3.040 22 H -0.258 1.258 23 H -0.303 1.303 24 H -0.298 1.298 25 C -0.077 4.077 26 C -0.121 4.121 27 C -0.118 4.118 28 C 0.117 3.883 29 N -0.521 5.521 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.175 0.825 38 H 0.194 0.806 39 H 0.153 0.847 40 H 0.075 0.925 41 H 0.050 0.950 42 H 0.374 0.626 43 H 0.247 0.753 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.049 0.951 47 H 0.038 0.962 48 H 0.072 0.928 49 H 0.059 0.941 50 H 0.048 0.952 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.875 -3.846 17.148 19.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.016 3.984 3 C -0.203 4.203 4 O -0.212 6.212 5 C 0.118 3.882 6 C -0.181 4.181 7 C -0.058 4.058 8 C -0.173 4.173 9 C -0.041 4.041 10 C 0.358 3.642 11 O -0.453 6.453 12 N -0.317 5.317 13 C -0.011 4.011 14 C 0.055 3.945 15 H 0.094 0.906 16 N -0.361 5.361 17 C -0.357 4.357 18 H 0.099 0.901 19 C -0.264 4.264 20 N -0.621 5.621 21 Si 0.790 3.210 22 H -0.182 1.182 23 H -0.231 1.231 24 H -0.225 1.225 25 C -0.078 4.078 26 C -0.179 4.179 27 C -0.176 4.176 28 C -0.005 4.005 29 N -0.248 5.248 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.192 0.808 38 H 0.211 0.789 39 H 0.171 0.829 40 H 0.093 0.907 41 H 0.069 0.931 42 H 0.208 0.792 43 H 0.056 0.944 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.068 0.932 47 H 0.057 0.943 48 H 0.091 0.909 49 H 0.078 0.922 50 H 0.067 0.933 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.055 -3.621 16.644 19.291 hybrid contribution 1.356 0.343 -0.331 1.438 sum -7.698 -3.278 16.313 18.334 Atomic orbital electron populations 1.22142 0.93603 1.02206 1.03594 1.22548 0.95423 0.93431 0.87013 1.21878 1.01527 0.93094 1.03830 1.86264 1.80381 1.15565 1.39021 1.20274 0.92634 0.85296 0.89975 1.21718 1.02469 0.94776 0.99096 1.21876 0.93308 0.93172 0.97450 1.22150 0.99897 1.02379 0.92849 1.20618 1.00173 0.88906 0.94390 1.17992 0.77383 0.85421 0.83361 1.90714 1.55626 1.14984 1.84000 1.48344 1.62203 1.10404 1.10725 1.22994 1.00418 0.78267 0.99397 1.21592 0.90218 0.94068 0.88656 0.90590 1.42604 1.38237 1.07397 1.47877 1.19611 1.11674 0.86734 1.17648 0.90058 1.25419 0.99833 1.01149 1.00032 1.69819 1.26428 1.35375 1.30500 0.85259 0.77306 0.81241 0.77184 1.18160 1.23103 1.22540 1.22013 0.95592 0.93752 0.96468 1.21627 0.93006 1.02798 1.00460 1.21497 1.01445 1.01987 0.92648 1.22407 0.97859 0.98294 0.81936 1.67359 1.20842 1.11084 1.25527 0.90732 0.90234 0.93229 0.91070 0.92769 0.89992 0.90118 0.80758 0.78905 0.82891 0.90696 0.93124 0.79195 0.94399 0.90955 0.90887 0.93205 0.94340 0.90912 0.92231 0.93348 0.89941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.62 9.28 71.98 0.67 -2.95 16 2 C 0.07 1.94 3.11 30.60 0.10 2.03 16 3 C -0.15 -3.48 9.56 71.98 0.69 -2.79 16 4 O -0.30 -8.18 9.76 -89.85 -0.88 -9.06 16 5 C 0.30 8.10 7.46 84.93 0.63 8.74 16 6 C -0.16 -3.08 10.05 22.54 0.23 -2.85 16 7 C -0.03 -0.56 10.16 22.42 0.23 -0.33 16 8 C -0.15 -3.68 9.63 22.61 0.22 -3.46 16 9 C 0.09 3.02 6.72 41.84 0.28 3.30 16 10 C 0.57 21.08 7.84 86.87 0.68 21.76 16 11 O -0.57 -23.09 16.57 -3.77 -0.06 -23.15 16 12 N -0.59 -21.34 3.31 -814.42 -2.70 -24.04 16 13 C 0.11 4.13 4.15 86.73 0.36 4.49 16 14 C 0.16 6.08 2.86 46.18 0.13 6.21 16 15 H 0.08 2.70 8.03 -2.38 -0.02 2.68 16 16 N -0.72 -33.95 4.61 -317.31 -1.46 -35.41 16 17 C -0.22 -11.62 9.98 84.03 0.84 -10.79 16 18 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 19 C -0.07 -3.99 5.50 84.86 0.47 -3.53 16 20 N -0.97 -58.31 13.06 21.65 0.28 -58.02 16 21 Si 0.96 44.74 29.55 68.60 2.03 46.77 16 22 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 23 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 24 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 25 C -0.08 -2.37 0.83 -50.72 -0.04 -2.42 16 26 C -0.12 -2.94 8.59 71.98 0.62 -2.32 16 27 C -0.12 -3.68 8.22 71.98 0.59 -3.09 16 28 C 0.12 4.04 5.82 86.93 0.51 4.55 16 29 N -0.52 -16.33 5.23 -298.21 -1.56 -17.89 16 30 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.05 1.22 7.62 -2.39 -0.02 1.20 16 33 H 0.07 2.38 4.95 -2.39 -0.01 2.37 16 34 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.17 2.24 8.06 -2.91 -0.02 2.21 16 38 H 0.19 1.41 8.06 -2.91 -0.02 1.39 16 39 H 0.15 3.51 7.63 -2.91 -0.02 3.48 16 40 H 0.07 2.49 6.60 -2.39 -0.02 2.47 16 41 H 0.05 2.17 6.24 -2.39 -0.01 2.16 16 42 H 0.37 19.44 6.10 -92.71 -0.57 18.88 16 43 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 44 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 46 H 0.05 1.24 7.91 -2.39 -0.02 1.23 16 47 H 0.04 1.44 6.38 -2.39 -0.02 1.43 16 48 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 49 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 50 H 0.05 1.89 7.99 -2.39 -0.02 1.87 16 51 H 0.08 2.64 7.95 -2.39 -0.02 2.63 16 Total: -1.00 -68.42 406.11 3.21 -65.21 By element: Atomic # 1 Polarization: 38.66 SS G_CDS: 0.37 Total: 39.02 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: 7.19 Total: 16.58 kcal Atomic # 7 Polarization: -129.93 SS G_CDS: -5.44 Total: -135.37 kcal Atomic # 8 Polarization: -31.27 SS G_CDS: -0.94 Total: -32.21 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -68.42 3.21 -65.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996465015.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.630 kcal (2) G-P(sol) polarization free energy of solvation -68.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds