Wall clock time and date at job start Wed Apr 1 2020 05:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.46623 * 2 1 4 4 C 1.53113 * 109.45870 * 240.02004 * 2 1 3 5 5 C 1.53619 * 109.55738 * 169.94293 * 4 2 1 6 6 C 1.50601 * 108.24793 * 50.29024 * 5 4 2 7 7 O 1.33189 * 129.60205 * 162.69155 * 6 5 4 8 8 N 1.21432 * 111.57233 * 180.19211 * 7 6 5 9 9 C 1.31504 * 111.52175 * 359.96748 * 8 7 6 10 10 C 1.48330 * 127.15018 * 179.97438 * 9 8 7 11 11 O 1.21496 * 119.99533 * 180.02562 * 10 9 8 12 12 N 1.34775 * 120.00493 * 0.02562 * 10 9 8 13 13 C 1.47426 * 125.64489 * 0.04380 * 12 10 9 14 14 C 1.54914 * 104.82992 * 204.09098 * 13 12 10 15 15 H 1.09004 * 111.00278 * 81.10732 * 14 13 12 16 16 N 1.46505 * 111.00202 * 204.91694 * 14 13 12 17 17 C 1.36935 * 120.00217 * 273.54861 * 16 14 13 18 18 H 1.08006 * 119.99642 * 359.97438 * 17 16 14 19 19 C 1.38808 * 120.00007 * 180.02562 * 17 16 14 20 20 N 1.31620 * 120.00356 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99913 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47566 * 89.99661 * 21 19 17 23 23 H 1.48503 * 109.47218 * 210.00283 * 21 19 17 24 24 H 1.48502 * 109.47082 * 329.99719 * 21 19 17 25 25 C 1.55405 * 101.66697 * 323.07703 * 14 13 12 26 26 C 1.53004 * 110.69383 * 277.04914 * 25 14 13 27 27 C 1.52995 * 110.85058 * 153.70010 * 25 14 13 28 28 C 1.47018 * 125.64993 * 180.02562 * 12 10 9 29 29 C 1.35381 * 123.76384 * 343.10315 * 6 5 4 30 30 C 1.50056 * 124.93510 * 359.70311 * 29 6 5 31 31 H 1.08997 * 109.46973 * 300.00755 * 1 2 3 32 32 H 1.08998 * 109.47320 * 60.01498 * 1 2 3 33 33 H 1.09007 * 109.46868 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.42943 * 290.20644 * 4 2 1 35 35 H 1.08996 * 109.42855 * 50.10267 * 4 2 1 36 36 H 1.08993 * 110.17043 * 290.34791 * 5 4 2 37 37 H 1.09006 * 109.28886 * 169.71652 * 5 4 2 38 38 H 1.08999 * 110.36956 * 322.93474 * 13 12 10 39 39 H 1.09003 * 110.36599 * 85.25378 * 13 12 10 40 40 H 0.96998 * 119.99743 * 93.55096 * 16 14 13 41 41 H 0.96989 * 120.00348 * 180.02562 * 20 19 17 42 42 H 1.08999 * 109.47052 * 174.82391 * 26 25 14 43 43 H 1.08993 * 109.46847 * 294.82366 * 26 25 14 44 44 H 1.09005 * 109.46970 * 54.82480 * 26 25 14 45 45 H 1.08999 * 109.47083 * 305.08524 * 27 25 14 46 46 H 1.09002 * 109.47293 * 65.08533 * 27 25 14 47 47 H 1.09000 * 109.47062 * 185.08628 * 27 25 14 48 48 H 1.09002 * 109.88241 * 298.39592 * 28 12 10 49 49 H 1.09000 * 109.88049 * 59.40721 * 28 12 10 50 50 H 1.08997 * 109.71091 * 103.76750 * 30 29 6 51 51 H 1.09007 * 109.70951 * 224.39842 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2505 5 6 3.5552 -0.5075 -1.3855 6 6 4.1987 -0.8461 -0.0667 7 8 5.4738 -1.1105 0.2128 8 7 5.6323 -1.3469 1.3933 9 6 4.4992 -1.2732 2.0565 10 6 4.2949 -1.4971 3.5085 11 8 3.1835 -1.3950 3.9884 12 7 5.3422 -1.8139 4.2955 13 6 6.7380 -1.9687 3.8470 14 6 7.3926 -2.8964 4.9010 15 1 7.1574 -3.9418 4.7010 16 7 8.8417 -2.6884 4.9560 17 6 9.6647 -3.3731 4.1021 18 1 9.2454 -4.0669 3.3884 19 6 11.0377 -3.1763 4.1546 20 7 11.5487 -2.3312 5.0248 21 14 12.1603 -4.1099 2.9894 22 1 12.3453 -3.3231 1.7437 23 1 13.4782 -4.3262 3.6387 24 1 11.5497 -5.4228 2.6595 25 6 6.7096 -2.4146 6.2111 26 6 7.4186 -1.1780 6.7672 27 6 6.6766 -3.5354 7.2520 28 6 5.2819 -2.0619 5.7434 29 6 3.5182 -0.9426 1.0997 30 6 2.0418 -0.7236 1.2539 31 1 -0.3633 0.5139 0.8899 32 1 -0.3634 0.5136 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 1.8260 -1.7869 -1.1671 35 1 1.5391 -0.3189 -2.1309 36 1 3.7668 0.5306 -1.6416 37 1 3.9438 -1.1649 -2.1634 38 1 6.7706 -2.4323 2.8611 39 1 7.2402 -1.0014 3.8291 40 1 9.2182 -2.0656 5.5972 41 1 12.5081 -2.1934 5.0612 42 1 6.8706 -0.8031 7.6317 43 1 8.4320 -1.4444 7.0670 44 1 7.4580 -0.4056 5.9991 45 1 6.1961 -4.4150 6.8236 46 1 7.6951 -3.7861 7.5486 47 1 6.1150 -3.2038 8.1254 48 1 4.9338 -1.1667 6.2586 49 1 4.6081 -2.8936 5.9492 50 1 1.5363 -1.6838 1.3563 51 1 1.8510 -0.1112 2.1353 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996474702.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:55 Heat of formation + Delta-G solvation = 29.591804 kcal Electronic energy + Delta-G solvation = -31753.627653 eV Core-core repulsion = 27656.064070 eV Total energy + Delta-G solvation = -4097.563583 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -45.08188 -40.00101 -38.48790 -37.89265 -34.25419 -33.94016 -33.08275 -32.61992 -30.80879 -30.46565 -27.67901 -27.41430 -27.02577 -26.65368 -24.28683 -23.89262 -23.40351 -22.15567 -21.36825 -20.06408 -19.06797 -18.63535 -17.78796 -17.28020 -17.09293 -16.57176 -15.74460 -15.51578 -15.17228 -14.66912 -14.49516 -14.16069 -14.04384 -13.92516 -13.71668 -13.56155 -13.48529 -13.01475 -12.90330 -12.81095 -12.75402 -12.41461 -12.13163 -12.03843 -11.97309 -11.61764 -11.36398 -11.30495 -11.21889 -11.01342 -10.97753 -10.89933 -10.78358 -10.60079 -10.47242 -10.23989 -10.18525 -10.05569 -9.81460 -9.66129 -9.17879 -8.98632 -8.39827 -7.05820 -5.83167 -3.13060 1.17967 1.63301 2.79017 3.02102 3.27721 3.41686 3.47363 3.48253 3.99238 4.26800 4.35591 4.42444 4.54621 4.70837 4.74118 4.84647 4.95602 5.04362 5.08002 5.11465 5.15173 5.28453 5.35028 5.42249 5.47371 5.50820 5.52456 5.57599 5.61357 5.69058 5.74118 5.76677 5.77612 5.83394 5.92186 5.98625 6.01545 6.05822 6.10409 6.15088 6.27245 6.32150 6.33966 6.51566 6.54656 6.65790 6.71141 6.90611 7.63301 7.67329 7.98450 8.24008 8.35225 9.47422 10.00604 10.36360 11.39079 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012343 B = 0.003109 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.880518 B = 9003.425210 C =10888.711276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 H 0.075 0.925 4 C -0.113 4.113 5 C -0.034 4.034 6 C -0.045 4.045 7 O 0.128 5.872 8 N -0.319 5.319 9 C -0.014 4.014 10 C 0.607 3.393 11 O -0.537 6.537 12 N -0.595 5.595 13 C 0.073 3.927 14 C 0.181 3.819 15 H 0.064 0.936 16 N -0.709 5.709 17 C -0.245 4.245 18 H 0.071 0.929 19 C -0.008 4.008 20 N -0.931 5.931 21 Si 0.907 3.093 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C -0.086 4.086 26 C -0.134 4.134 27 C -0.129 4.129 28 C 0.122 3.878 29 C -0.154 4.154 30 C -0.037 4.037 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.390 0.610 41 H 0.256 0.744 42 H 0.049 0.951 43 H 0.073 0.927 44 H 0.055 0.945 45 H 0.053 0.947 46 H 0.068 0.932 47 H 0.050 0.950 48 H 0.067 0.933 49 H 0.069 0.931 50 H 0.082 0.918 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.585 4.610 -8.859 22.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 H 0.094 0.906 4 C -0.151 4.151 5 C -0.072 4.072 6 C -0.109 4.109 7 O 0.054 5.946 8 N -0.020 5.020 9 C -0.172 4.172 10 C 0.393 3.607 11 O -0.414 6.414 12 N -0.328 5.328 13 C -0.053 4.053 14 C 0.069 3.931 15 H 0.082 0.918 16 N -0.351 5.351 17 C -0.376 4.376 18 H 0.089 0.911 19 C -0.204 4.204 20 N -0.579 5.579 21 Si 0.738 3.262 22 H -0.216 1.216 23 H -0.218 1.218 24 H -0.207 1.207 25 C -0.088 4.088 26 C -0.191 4.191 27 C -0.186 4.186 28 C -0.001 4.001 29 C -0.159 4.159 30 C -0.074 4.074 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.227 0.773 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.091 0.909 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.087 0.913 47 H 0.070 0.930 48 H 0.085 0.915 49 H 0.087 0.913 50 H 0.100 0.900 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -19.840 4.272 -8.306 21.928 hybrid contribution 0.301 -0.088 -0.513 0.601 sum -19.539 4.184 -8.819 21.842 Atomic orbital electron populations 1.21800 0.94360 1.02157 1.01986 1.21326 0.96145 0.99887 0.94131 0.90618 1.21761 0.93022 1.01807 0.98494 1.20274 0.94312 1.03130 0.89509 1.24122 0.83798 1.04097 0.98872 1.84755 1.26802 1.62311 1.20693 1.74862 1.22067 1.15424 0.89659 1.22933 0.90113 1.07261 0.96850 1.16481 0.83735 0.77800 0.82647 1.90741 1.23307 1.53316 1.74070 1.48352 1.08986 1.66235 1.09207 1.23735 0.78357 1.01904 1.01292 1.21398 0.85777 0.96056 0.89908 0.91836 1.42425 0.98410 1.51161 1.43072 1.19243 0.88107 1.18203 1.12005 0.91095 1.24733 0.96759 0.99682 0.99275 1.69649 1.11688 1.38647 1.37872 0.86189 0.80318 0.79368 0.80309 1.21587 1.21762 1.20697 1.21897 0.93163 0.96783 0.96909 1.21721 1.01104 0.96242 1.00072 1.21687 1.02717 0.96851 0.97360 1.22104 0.97579 1.00855 0.79529 1.20591 0.98474 1.06153 0.90692 1.20025 0.87328 1.01590 0.98473 0.92287 0.92432 0.92415 0.90956 0.90099 0.88712 0.88898 0.89882 0.91111 0.77324 0.93385 0.93154 0.90864 0.92566 0.92784 0.91290 0.93047 0.91481 0.91319 0.89977 0.89384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.16 37.15 0.34 -0.55 16 2 C -0.10 -0.72 2.70 -90.28 -0.24 -0.96 16 3 H 0.08 0.57 8.12 -51.93 -0.42 0.15 16 4 C -0.11 -0.69 5.20 -26.35 -0.14 -0.83 16 5 C -0.03 -0.24 6.31 -27.61 -0.17 -0.41 16 6 C -0.04 -0.52 7.38 -35.38 -0.26 -0.78 16 7 O 0.13 1.87 11.18 19.19 0.21 2.08 16 8 N -0.32 -5.45 9.36 33.29 0.31 -5.14 16 9 C -0.01 -0.23 7.00 -82.82 -0.58 -0.81 16 10 C 0.61 10.95 7.88 -12.11 -0.10 10.85 16 11 O -0.54 -10.20 16.41 5.37 0.09 -10.11 16 12 N -0.60 -10.56 3.33 -171.45 -0.57 -11.13 16 13 C 0.07 1.40 5.56 -2.53 -0.01 1.39 16 14 C 0.18 3.59 2.93 -65.64 -0.19 3.40 16 15 H 0.06 1.30 8.03 -51.93 -0.42 0.89 16 16 N -0.71 -17.06 5.17 -51.21 -0.26 -17.32 16 17 C -0.24 -6.61 9.98 -15.06 -0.15 -6.76 16 18 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 19 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 20 N -0.93 -27.36 13.06 55.49 0.72 -26.63 16 21 Si 0.91 22.15 29.55 -169.99 -5.02 17.12 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C -0.09 -1.41 0.86 -152.54 -0.13 -1.54 16 26 C -0.13 -2.18 7.60 37.16 0.28 -1.90 16 27 C -0.13 -1.88 8.50 37.15 0.32 -1.56 16 28 C 0.12 1.93 6.04 -3.07 -0.02 1.91 16 29 C -0.15 -2.06 6.04 -104.92 -0.63 -2.70 16 30 C -0.04 -0.40 4.97 -27.91 -0.14 -0.54 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 34 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 35 H 0.08 0.34 8.11 -51.93 -0.42 -0.08 16 36 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 1.70 6.24 -51.93 -0.32 1.37 16 39 H 0.07 1.48 7.73 -51.93 -0.40 1.08 16 40 H 0.39 9.79 5.38 -40.82 -0.22 9.57 16 41 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.07 1.32 6.66 -51.93 -0.35 0.97 16 44 H 0.06 0.97 7.46 -51.93 -0.39 0.58 16 45 H 0.05 0.76 8.13 -51.93 -0.42 0.33 16 46 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 47 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 48 H 0.07 1.02 7.84 -51.93 -0.41 0.61 16 49 H 0.07 1.04 7.82 -51.93 -0.41 0.63 16 50 H 0.08 0.89 8.12 -51.93 -0.42 0.46 16 51 H 0.09 1.06 7.84 -51.92 -0.41 0.66 16 LS Contribution 399.86 15.07 6.03 6.03 Total: -1.00 -31.33 399.86 -8.77 -40.11 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -8.35 Total: 7.11 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -1.93 Total: -2.11 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: 0.20 Total: -60.22 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: 0.30 Total: -8.03 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.33 -8.77 -40.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996474702.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.698 kcal (2) G-P(sol) polarization free energy of solvation -31.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds