Wall clock time and date at job start Wed Apr 1 2020 05:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.46623 * 2 1 4 4 C 1.53113 * 109.45870 * 240.02004 * 2 1 3 5 5 C 1.53619 * 109.55738 * 169.94293 * 4 2 1 6 6 C 1.50601 * 108.24793 * 50.29024 * 5 4 2 7 7 O 1.33189 * 129.60205 * 162.69155 * 6 5 4 8 8 N 1.21432 * 111.57233 * 180.19211 * 7 6 5 9 9 C 1.31504 * 111.52175 * 359.96748 * 8 7 6 10 10 C 1.48330 * 127.15018 * 179.97438 * 9 8 7 11 11 O 1.21496 * 119.99533 * 180.02562 * 10 9 8 12 12 N 1.34775 * 120.00493 * 0.02562 * 10 9 8 13 13 C 1.47426 * 125.64489 * 0.04380 * 12 10 9 14 14 C 1.54914 * 104.82992 * 204.09098 * 13 12 10 15 15 H 1.09004 * 111.00278 * 81.10732 * 14 13 12 16 16 N 1.46505 * 111.00202 * 204.91694 * 14 13 12 17 17 C 1.36935 * 120.00217 * 273.54861 * 16 14 13 18 18 H 1.08006 * 119.99642 * 359.97438 * 17 16 14 19 19 C 1.38808 * 120.00007 * 180.02562 * 17 16 14 20 20 N 1.31620 * 120.00356 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99913 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47566 * 89.99661 * 21 19 17 23 23 H 1.48503 * 109.47218 * 210.00283 * 21 19 17 24 24 H 1.48502 * 109.47082 * 329.99719 * 21 19 17 25 25 C 1.55405 * 101.66697 * 323.07703 * 14 13 12 26 26 C 1.53004 * 110.69383 * 277.04914 * 25 14 13 27 27 C 1.52995 * 110.85058 * 153.70010 * 25 14 13 28 28 C 1.47018 * 125.64993 * 180.02562 * 12 10 9 29 29 C 1.35381 * 123.76384 * 343.10315 * 6 5 4 30 30 C 1.50056 * 124.93510 * 359.70311 * 29 6 5 31 31 H 1.08997 * 109.46973 * 300.00755 * 1 2 3 32 32 H 1.08998 * 109.47320 * 60.01498 * 1 2 3 33 33 H 1.09007 * 109.46868 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.42943 * 290.20644 * 4 2 1 35 35 H 1.08996 * 109.42855 * 50.10267 * 4 2 1 36 36 H 1.08993 * 110.17043 * 290.34791 * 5 4 2 37 37 H 1.09006 * 109.28886 * 169.71652 * 5 4 2 38 38 H 1.08999 * 110.36956 * 322.93474 * 13 12 10 39 39 H 1.09003 * 110.36599 * 85.25378 * 13 12 10 40 40 H 0.96998 * 119.99743 * 93.55096 * 16 14 13 41 41 H 0.96989 * 120.00348 * 180.02562 * 20 19 17 42 42 H 1.08999 * 109.47052 * 174.82391 * 26 25 14 43 43 H 1.08993 * 109.46847 * 294.82366 * 26 25 14 44 44 H 1.09005 * 109.46970 * 54.82480 * 26 25 14 45 45 H 1.08999 * 109.47083 * 305.08524 * 27 25 14 46 46 H 1.09002 * 109.47293 * 65.08533 * 27 25 14 47 47 H 1.09000 * 109.47062 * 185.08628 * 27 25 14 48 48 H 1.09002 * 109.88241 * 298.39592 * 28 12 10 49 49 H 1.09000 * 109.88049 * 59.40721 * 28 12 10 50 50 H 1.08997 * 109.71091 * 103.76750 * 30 29 6 51 51 H 1.09007 * 109.70951 * 224.39842 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2505 5 6 3.5552 -0.5075 -1.3855 6 6 4.1987 -0.8461 -0.0667 7 8 5.4738 -1.1105 0.2128 8 7 5.6323 -1.3469 1.3933 9 6 4.4992 -1.2732 2.0565 10 6 4.2949 -1.4971 3.5085 11 8 3.1835 -1.3950 3.9884 12 7 5.3422 -1.8139 4.2955 13 6 6.7380 -1.9687 3.8470 14 6 7.3926 -2.8964 4.9010 15 1 7.1574 -3.9418 4.7010 16 7 8.8417 -2.6884 4.9560 17 6 9.6647 -3.3731 4.1021 18 1 9.2454 -4.0669 3.3884 19 6 11.0377 -3.1763 4.1546 20 7 11.5487 -2.3312 5.0248 21 14 12.1603 -4.1099 2.9894 22 1 12.3453 -3.3231 1.7437 23 1 13.4782 -4.3262 3.6387 24 1 11.5497 -5.4228 2.6595 25 6 6.7096 -2.4146 6.2111 26 6 7.4186 -1.1780 6.7672 27 6 6.6766 -3.5354 7.2520 28 6 5.2819 -2.0619 5.7434 29 6 3.5182 -0.9426 1.0997 30 6 2.0418 -0.7236 1.2539 31 1 -0.3633 0.5139 0.8899 32 1 -0.3634 0.5136 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 1.8260 -1.7869 -1.1671 35 1 1.5391 -0.3189 -2.1309 36 1 3.7668 0.5306 -1.6416 37 1 3.9438 -1.1649 -2.1634 38 1 6.7706 -2.4323 2.8611 39 1 7.2402 -1.0014 3.8291 40 1 9.2182 -2.0656 5.5972 41 1 12.5081 -2.1934 5.0612 42 1 6.8706 -0.8031 7.6317 43 1 8.4320 -1.4444 7.0670 44 1 7.4580 -0.4056 5.9991 45 1 6.1961 -4.4150 6.8236 46 1 7.6951 -3.7861 7.5486 47 1 6.1150 -3.2038 8.1254 48 1 4.9338 -1.1667 6.2586 49 1 4.6081 -2.8936 5.9492 50 1 1.5363 -1.6838 1.3563 51 1 1.8510 -0.1112 2.1353 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996474702.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:54 Heat of formation + Delta-G solvation = 11.935885 kcal Electronic energy + Delta-G solvation = -31754.393271 eV Core-core repulsion = 27656.064070 eV Total energy + Delta-G solvation = -4098.329201 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -46.23742 -41.45677 -39.56944 -38.99516 -35.98975 -35.27055 -34.47538 -33.38880 -32.72362 -31.31610 -29.30956 -28.51644 -28.31899 -27.76850 -25.95924 -25.12530 -24.37415 -23.16923 -22.82872 -21.05434 -20.28752 -19.98820 -19.23485 -18.95842 -18.22690 -17.87446 -17.24896 -16.89582 -16.37000 -16.02869 -15.74888 -15.49632 -15.20851 -15.16965 -14.76291 -14.59159 -14.46410 -14.36707 -14.31272 -14.11331 -13.74715 -13.53213 -13.47350 -13.08454 -13.00486 -12.92157 -12.80857 -12.68891 -12.62070 -12.24103 -12.18974 -12.10011 -11.94560 -11.88719 -11.67482 -11.62669 -11.57627 -11.35648 -11.30848 -11.22433 -10.95722 -10.15673 -9.87924 -9.07738 -7.97412 -5.26821 -0.02545 0.58506 1.46282 1.47849 1.55198 1.58185 1.91161 1.95909 2.53376 2.74863 3.25780 3.33210 3.50760 3.55857 3.67549 3.78716 3.84625 3.92210 3.95864 4.07409 4.18449 4.20457 4.22802 4.32890 4.36013 4.43962 4.53113 4.56556 4.70922 4.74016 4.77631 4.78025 4.83693 4.86653 4.93028 4.95996 4.99283 5.02260 5.07893 5.11013 5.13326 5.17664 5.19436 5.32611 5.37071 5.40932 5.44209 5.49922 5.52271 6.16723 6.24239 6.68558 7.01349 7.32469 8.02434 8.29366 9.25386 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012343 B = 0.003109 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.880518 B = 9003.425210 C =10888.711276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 H 0.078 0.922 4 C -0.109 4.109 5 C -0.034 4.034 6 C -0.026 4.026 7 O 0.127 5.873 8 N -0.353 5.353 9 C -0.042 4.042 10 C 0.604 3.396 11 O -0.550 6.550 12 N -0.598 5.598 13 C 0.093 3.907 14 C 0.175 3.825 15 H 0.058 0.942 16 N -0.717 5.717 17 C -0.244 4.244 18 H 0.071 0.929 19 C -0.066 4.066 20 N -0.964 5.964 21 Si 0.968 3.032 22 H -0.289 1.289 23 H -0.294 1.294 24 H -0.271 1.271 25 C -0.076 4.076 26 C -0.128 4.128 27 C -0.124 4.124 28 C 0.122 3.878 29 C -0.168 4.168 30 C -0.035 4.035 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.113 0.887 36 H 0.118 0.882 37 H 0.115 0.885 38 H 0.070 0.930 39 H 0.050 0.950 40 H 0.383 0.617 41 H 0.252 0.748 42 H 0.081 0.919 43 H 0.052 0.948 44 H 0.039 0.961 45 H 0.060 0.940 46 H 0.051 0.949 47 H 0.081 0.919 48 H 0.079 0.921 49 H 0.082 0.918 50 H 0.078 0.922 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.711 4.644 -10.557 25.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.110 4.110 3 H 0.096 0.904 4 C -0.146 4.146 5 C -0.072 4.072 6 C -0.091 4.091 7 O 0.053 5.947 8 N -0.055 5.055 9 C -0.198 4.198 10 C 0.392 3.608 11 O -0.428 6.428 12 N -0.330 5.330 13 C -0.033 4.033 14 C 0.064 3.936 15 H 0.076 0.924 16 N -0.358 5.358 17 C -0.376 4.376 18 H 0.089 0.911 19 C -0.259 4.259 20 N -0.614 5.614 21 Si 0.798 3.202 22 H -0.216 1.216 23 H -0.220 1.220 24 H -0.196 1.196 25 C -0.077 4.077 26 C -0.185 4.185 27 C -0.181 4.181 28 C 0.001 3.999 29 C -0.174 4.174 30 C -0.072 4.072 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.131 0.869 36 H 0.136 0.864 37 H 0.133 0.867 38 H 0.088 0.912 39 H 0.068 0.932 40 H 0.219 0.781 41 H 0.061 0.939 42 H 0.100 0.900 43 H 0.071 0.929 44 H 0.058 0.942 45 H 0.079 0.921 46 H 0.070 0.930 47 H 0.100 0.900 48 H 0.097 0.903 49 H 0.100 0.900 50 H 0.097 0.903 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -22.013 4.290 -9.999 24.555 hybrid contribution 0.852 -0.065 -0.035 0.855 sum -21.161 4.225 -10.034 23.798 Atomic orbital electron populations 1.21783 0.93170 1.02439 1.02628 1.21319 0.97064 0.99591 0.93025 0.90404 1.21804 0.92307 1.01700 0.98838 1.20664 0.94469 1.04893 0.87176 1.25046 0.82265 1.01357 1.00405 1.84701 1.28435 1.61886 1.19695 1.74840 1.22867 1.17090 0.90731 1.23044 0.91365 1.08736 0.96675 1.16717 0.83469 0.77303 0.83357 1.90717 1.23531 1.53935 1.74592 1.48359 1.08169 1.66420 1.10044 1.23262 0.79268 1.00359 1.00421 1.21522 0.83937 0.95825 0.92347 0.92419 1.42496 0.99990 1.50816 1.42524 1.19547 0.88702 1.17587 1.11753 0.91089 1.25469 0.98170 1.01083 1.01147 1.69789 1.11523 1.40421 1.39678 0.85220 0.78275 0.78524 0.78223 1.21608 1.22012 1.19582 1.21846 0.92850 0.97375 0.95635 1.21662 1.00416 0.95743 1.00722 1.21658 1.02255 0.96372 0.97831 1.22215 0.97244 1.01948 0.78531 1.20945 0.99419 1.06565 0.90467 1.20088 0.85859 1.01516 0.99777 0.92985 0.90486 0.92326 0.91228 0.86875 0.86423 0.86678 0.91209 0.93162 0.78112 0.93885 0.89973 0.92899 0.94210 0.92115 0.93013 0.90024 0.90255 0.89962 0.90335 0.91294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.16 71.98 0.66 -0.74 16 2 C -0.09 -1.16 2.70 -10.57 -0.03 -1.19 16 3 H 0.08 0.97 8.12 -2.39 -0.02 0.96 16 4 C -0.11 -0.94 5.20 30.84 0.16 -0.78 16 5 C -0.03 -0.37 6.31 30.02 0.19 -0.18 16 6 C -0.03 -0.58 7.38 24.99 0.18 -0.39 16 7 O 0.13 3.69 11.18 78.70 0.88 4.57 16 8 N -0.35 -12.47 9.36 -48.94 -0.46 -12.93 16 9 C -0.04 -1.44 7.00 42.55 0.30 -1.14 16 10 C 0.60 22.24 7.88 86.93 0.68 22.93 16 11 O -0.55 -21.06 16.41 -3.70 -0.06 -21.12 16 12 N -0.60 -21.52 3.33 -814.64 -2.71 -24.23 16 13 C 0.09 3.73 5.56 86.86 0.48 4.21 16 14 C 0.17 7.09 2.93 46.47 0.14 7.22 16 15 H 0.06 2.41 8.03 -2.39 -0.02 2.39 16 16 N -0.72 -35.55 5.17 -315.94 -1.63 -37.18 16 17 C -0.24 -13.47 9.98 84.03 0.84 -12.63 16 18 H 0.07 3.84 7.83 -2.91 -0.02 3.81 16 19 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 20 N -0.96 -58.06 13.06 21.65 0.28 -57.78 16 21 Si 0.97 46.16 29.55 68.60 2.03 48.19 16 22 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 23 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 24 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 25 C -0.08 -2.45 0.86 -50.91 -0.04 -2.49 16 26 C -0.13 -4.16 7.60 71.98 0.55 -3.61 16 27 C -0.12 -3.45 8.50 71.98 0.61 -2.83 16 28 C 0.12 3.77 6.04 86.73 0.52 4.30 16 29 C -0.17 -4.48 6.04 -20.06 -0.12 -4.60 16 30 C -0.03 -0.74 4.97 29.83 0.15 -0.59 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 34 H 0.07 0.68 8.12 -2.39 -0.02 0.66 16 35 H 0.11 0.36 8.11 -2.39 -0.02 0.34 16 36 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.12 0.82 8.14 -2.38 -0.02 0.80 16 38 H 0.07 2.99 6.24 -2.39 -0.01 2.97 16 39 H 0.05 2.21 7.73 -2.39 -0.02 2.19 16 40 H 0.38 19.97 5.38 -92.71 -0.50 19.47 16 41 H 0.25 14.77 8.31 -92.72 -0.77 14.00 16 42 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.05 1.94 6.66 -2.39 -0.02 1.93 16 44 H 0.04 1.40 7.46 -2.38 -0.02 1.38 16 45 H 0.06 1.61 8.13 -2.39 -0.02 1.59 16 46 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 47 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 48 H 0.08 2.29 7.84 -2.39 -0.02 2.27 16 49 H 0.08 2.35 7.82 -2.39 -0.02 2.33 16 50 H 0.08 1.68 8.12 -2.39 -0.02 1.66 16 51 H 0.07 1.70 7.84 -2.38 -0.02 1.68 16 Total: -1.00 -70.34 399.86 4.50 -65.84 By element: Atomic # 1 Polarization: 30.01 SS G_CDS: 0.43 Total: 30.44 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: 5.74 Total: 4.20 kcal Atomic # 7 Polarization: -127.60 SS G_CDS: -4.52 Total: -132.12 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: 0.82 Total: -16.54 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -70.34 4.50 -65.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996474702.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.771 kcal (2) G-P(sol) polarization free energy of solvation -70.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds