Wall clock time and date at job start Wed Apr 1 2020 04:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47303 * 2 1 4 4 O 1.42897 * 109.47507 * 120.00059 * 2 1 3 5 5 C 1.35689 * 116.99915 * 89.99781 * 4 2 1 6 6 C 1.38901 * 119.62092 * 179.73027 * 5 4 2 7 7 C 1.39569 * 118.94146 * 179.73741 * 6 5 4 8 8 C 1.48165 * 120.89315 * 180.26252 * 7 6 5 9 9 O 1.21510 * 120.00485 * 172.72753 * 8 7 6 10 10 N 1.34781 * 119.99633 * 352.72227 * 8 7 6 11 11 C 1.47025 * 125.64749 * 4.90327 * 10 8 7 12 12 C 1.54319 * 107.26799 * 181.02148 * 11 10 8 13 13 H 1.09000 * 110.71954 * 263.82826 * 12 11 10 14 14 N 1.46501 * 110.71784 * 140.55490 * 12 11 10 15 15 C 1.36937 * 120.00096 * 86.45666 * 14 12 11 16 16 H 1.07998 * 120.00154 * 359.97438 * 15 14 12 17 17 C 1.38820 * 120.00245 * 180.02562 * 15 14 12 18 18 N 1.31616 * 119.99766 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 119.99741 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.47079 * 90.00097 * 19 17 15 21 21 H 1.48503 * 109.47039 * 210.00232 * 19 17 15 22 22 H 1.48500 * 109.47309 * 330.00401 * 19 17 15 23 23 C 1.55153 * 102.94416 * 22.19406 * 12 11 10 24 24 C 1.52996 * 111.00913 * 82.57083 * 23 12 11 25 25 C 1.53010 * 111.00335 * 206.38794 * 23 12 11 26 26 C 1.47418 * 125.64814 * 184.59078 * 10 8 7 27 27 C 1.39968 * 118.21892 * 0.52353 * 7 6 5 28 28 C 1.37973 * 119.13498 * 359.73753 * 27 7 6 29 29 N 1.31914 * 120.97657 * 359.97438 * 28 27 7 30 30 H 1.08998 * 109.46691 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46687 * 299.99640 * 1 2 3 32 32 H 1.08997 * 109.47027 * 59.99893 * 1 2 3 33 33 H 1.09001 * 109.47575 * 240.00168 * 2 1 3 34 34 H 1.09009 * 109.46821 * 59.99947 * 3 2 1 35 35 H 1.08998 * 109.47506 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.47128 * 300.00775 * 3 2 1 37 37 H 1.07998 * 120.52558 * 359.97438 * 6 5 4 38 38 H 1.09009 * 109.87851 * 300.43851 * 11 10 8 39 39 H 1.09000 * 109.88303 * 61.44387 * 11 10 8 40 40 H 0.97001 * 119.99951 * 266.44751 * 14 12 11 41 41 H 0.97008 * 119.99255 * 179.97438 * 18 17 15 42 42 H 1.09002 * 109.46916 * 59.99890 * 24 23 12 43 43 H 1.09004 * 109.47520 * 179.97438 * 24 23 12 44 44 H 1.08994 * 109.47012 * 300.00403 * 24 23 12 45 45 H 1.08994 * 109.47037 * 59.99334 * 25 23 12 46 46 H 1.08992 * 109.46982 * 180.02562 * 25 23 12 47 47 H 1.09000 * 109.46491 * 299.99393 * 25 23 12 48 48 H 1.08995 * 110.37219 * 274.74883 * 26 10 8 49 49 H 1.09000 * 110.36645 * 37.07366 * 26 10 8 50 50 H 1.08002 * 120.43549 * 179.71077 * 27 7 6 51 51 H 1.08001 * 119.51502 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2117 -2.0110 1.0652 6 6 2.6797 -2.7192 2.1646 7 6 2.8806 -4.0953 2.0461 8 6 3.3729 -4.8938 3.1929 9 8 3.4168 -6.1056 3.1153 10 7 3.7721 -4.2760 4.3223 11 6 3.6777 -2.8332 4.5890 12 6 4.2771 -2.5860 5.9893 13 1 3.4919 -2.5537 6.7447 14 7 5.0648 -1.3509 6.0053 15 6 4.4515 -0.1507 6.2473 16 1 3.3870 -0.1145 6.4260 17 6 5.1978 1.0198 6.2619 18 7 4.6082 2.1733 6.4940 19 14 7.0388 0.9574 5.9520 20 1 7.3011 1.1018 4.4975 21 1 7.7022 2.0642 6.6870 22 1 7.5767 -0.3434 6.4252 23 6 5.1906 -3.8223 6.1996 24 6 6.5473 -3.6237 5.5209 25 6 5.3651 -4.1284 7.6886 26 6 4.3698 -4.9357 5.4973 27 6 2.6099 -4.6998 0.8130 28 6 2.1528 -3.9217 -0.2306 29 7 1.9689 -2.6241 -0.0803 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.6767 1.9563 0.8901 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9564 -0.8899 37 1 2.8811 -2.2137 3.0975 38 1 4.2446 -2.2799 3.8400 39 1 2.6338 -2.5201 4.5693 40 1 6.0209 -1.3833 5.8445 41 1 5.1298 2.9911 6.5045 42 1 7.0406 -2.7487 5.9441 43 1 7.1679 -4.5048 5.6843 44 1 6.4001 -3.4758 4.4511 45 1 4.3916 -4.3333 8.1339 46 1 6.0100 -4.9990 7.8073 47 1 5.8185 -3.2705 8.1850 48 1 3.5896 -5.3103 6.1599 49 1 5.0248 -5.7486 5.1836 50 1 2.7573 -5.7614 0.6801 51 1 1.9423 -4.3818 -1.1848 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996513588.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:05 Heat of formation + Delta-G solvation = 2.921865 kcal Electronic energy + Delta-G solvation = -32030.477193 eV Core-core repulsion = 27931.757115 eV Total energy + Delta-G solvation = -4098.720078 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.06682 -40.01287 -38.48870 -37.70840 -34.48201 -33.71286 -33.27926 -32.33400 -31.19934 -30.17262 -28.24145 -27.30050 -27.24119 -26.81784 -24.85409 -23.72111 -23.20406 -21.87150 -21.07804 -19.97000 -19.10214 -18.05761 -17.72012 -16.93850 -16.52505 -16.04734 -15.88846 -15.63777 -15.33175 -14.70831 -14.51442 -14.35894 -14.12898 -14.01004 -13.68639 -13.66726 -13.33756 -13.20628 -12.75098 -12.62995 -12.53221 -12.39364 -12.31795 -12.27865 -11.98405 -11.93940 -11.67632 -11.43378 -11.27803 -11.06547 -10.99069 -10.83321 -10.67346 -10.60914 -10.37657 -10.19994 -10.02448 -9.92554 -9.64480 -9.58105 -9.02894 -8.62031 -8.45428 -7.44016 -5.87930 -3.26018 0.67327 1.11379 2.87246 2.88595 3.05342 3.27824 3.31117 3.38175 3.78992 4.15712 4.35406 4.48309 4.71101 4.81278 4.85113 4.87330 4.92857 4.93692 5.03896 5.05607 5.19766 5.29274 5.39080 5.49389 5.49685 5.53622 5.59092 5.60662 5.66504 5.69826 5.72877 5.76615 5.80642 5.82173 5.90367 5.98717 6.03523 6.07902 6.08960 6.14508 6.16229 6.20697 6.31399 6.39514 6.40141 6.48874 6.65056 7.28120 7.52994 7.74466 7.86307 8.10738 8.30554 9.07087 9.79109 9.96784 11.29585 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007747 B = 0.004734 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3613.587486 B = 5913.101302 C = 8819.513335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.082 3.918 3 C -0.153 4.153 4 O -0.292 6.292 5 C 0.324 3.676 6 C -0.189 4.189 7 C -0.050 4.050 8 C 0.572 3.428 9 O -0.541 6.541 10 N -0.601 5.601 11 C 0.060 3.940 12 C 0.186 3.814 13 H 0.078 0.922 14 N -0.735 5.735 15 C -0.254 4.254 16 H 0.093 0.907 17 C 0.014 3.986 18 N -0.926 5.926 19 Si 0.877 3.123 20 H -0.283 1.283 21 H -0.289 1.289 22 H -0.276 1.276 23 C -0.090 4.090 24 C -0.137 4.137 25 C -0.130 4.130 26 C 0.119 3.881 27 C -0.162 4.162 28 C 0.130 3.870 29 N -0.531 5.531 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.184 0.816 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.367 0.633 41 H 0.261 0.739 42 H 0.065 0.935 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.057 0.943 46 H 0.052 0.948 47 H 0.067 0.933 48 H 0.072 0.928 49 H 0.077 0.923 50 H 0.146 0.854 51 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.828 -10.716 -10.435 15.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.026 3.974 3 C -0.210 4.210 4 O -0.199 6.199 5 C 0.145 3.855 6 C -0.209 4.209 7 C -0.060 4.060 8 C 0.361 3.639 9 O -0.419 6.419 10 N -0.333 5.333 11 C -0.065 4.065 12 C 0.074 3.926 13 H 0.095 0.905 14 N -0.378 5.378 15 C -0.384 4.384 16 H 0.111 0.889 17 C -0.183 4.183 18 N -0.572 5.572 19 Si 0.707 3.293 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.203 1.203 23 C -0.091 4.091 24 C -0.194 4.194 25 C -0.188 4.188 26 C -0.003 4.003 27 C -0.183 4.183 28 C -0.025 4.025 29 N -0.255 5.255 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.201 0.799 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.203 0.797 41 H 0.071 0.929 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.071 0.929 47 H 0.086 0.914 48 H 0.090 0.910 49 H 0.095 0.905 50 H 0.164 0.836 51 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -4.238 -10.454 -10.926 15.705 hybrid contribution 1.451 -0.246 0.083 1.474 sum -2.787 -10.700 -10.844 15.487 Atomic orbital electron populations 1.22219 0.94990 1.02667 1.02692 1.22349 0.94305 0.92995 0.87746 1.21923 1.02289 0.93726 1.03091 1.86418 1.79695 1.15334 1.38407 1.19744 0.91342 0.85071 0.89328 1.22862 1.02525 0.93639 1.01899 1.20066 0.98518 0.92778 0.94674 1.17773 0.78042 0.86721 0.81390 1.90746 1.55768 1.13295 1.82121 1.48365 1.60047 1.09825 1.15038 1.23782 1.01608 0.79084 1.02077 1.21226 0.93102 0.85606 0.92687 0.90455 1.42864 1.06476 1.02515 1.85960 1.19062 0.94754 0.82641 1.41907 0.88904 1.24639 0.97174 0.95236 1.01223 1.69692 1.34904 0.97473 1.55168 0.86697 0.87308 0.77117 0.78208 1.20917 1.21552 1.20251 1.22067 0.95713 0.95363 0.95958 1.21709 0.95469 1.01728 1.00524 1.21658 1.01816 1.01705 0.93585 1.22399 0.96329 0.95525 0.86059 1.22034 1.01703 1.02170 0.92396 1.22329 0.93930 0.87551 0.98671 1.67111 1.20792 1.12837 1.24797 0.92195 0.91704 0.91227 0.89503 0.91114 0.91648 0.90689 0.79905 0.89657 0.90652 0.79720 0.92900 0.91633 0.92680 0.92544 0.92356 0.92875 0.91355 0.90984 0.90478 0.83600 0.81962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.82 9.53 37.16 0.35 -1.47 16 2 C 0.08 1.02 3.11 -26.73 -0.08 0.94 16 3 C -0.15 -1.72 9.56 37.16 0.36 -1.36 16 4 O -0.29 -4.56 9.76 -18.77 -0.18 -4.74 16 5 C 0.32 4.94 7.45 -17.16 -0.13 4.81 16 6 C -0.19 -2.89 8.61 -38.84 -0.33 -3.22 16 7 C -0.05 -0.74 5.90 -104.68 -0.62 -1.35 16 8 C 0.57 9.16 7.83 -12.18 -0.10 9.06 16 9 O -0.54 -9.70 16.76 5.36 0.09 -9.61 16 10 N -0.60 -9.07 3.31 -171.65 -0.57 -9.64 16 11 C 0.06 0.95 4.32 -3.06 -0.01 0.94 16 12 C 0.19 3.15 2.85 -66.10 -0.19 2.97 16 13 H 0.08 1.34 8.02 -51.93 -0.42 0.92 16 14 N -0.73 -15.49 4.88 -51.65 -0.25 -15.74 16 15 C -0.25 -6.54 10.46 -15.06 -0.16 -6.70 16 16 H 0.09 2.57 8.06 -52.49 -0.42 2.14 16 17 C 0.01 0.39 5.50 -17.43 -0.10 0.29 16 18 N -0.93 -27.60 13.97 55.49 0.78 -26.82 16 19 Si 0.88 20.88 27.73 -169.99 -4.71 16.17 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.28 -6.11 6.52 56.52 0.37 -5.74 16 23 C -0.09 -1.26 0.87 -152.24 -0.13 -1.39 16 24 C -0.14 -1.96 7.94 37.16 0.30 -1.66 16 25 C -0.13 -1.63 8.68 37.16 0.32 -1.30 16 26 C 0.12 1.62 5.83 -2.41 -0.01 1.61 16 27 C -0.16 -2.04 9.67 -39.03 -0.38 -2.42 16 28 C 0.13 1.49 11.17 -17.61 -0.20 1.30 16 29 N -0.53 -7.21 8.61 -13.38 -0.12 -7.33 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 1.06 6.98 -51.93 -0.36 0.70 16 34 H 0.07 0.85 8.14 -51.92 -0.42 0.42 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.18 2.92 2.95 -52.85 -0.16 2.76 16 38 H 0.09 1.48 6.56 -51.92 -0.34 1.13 16 39 H 0.08 1.19 6.82 -51.93 -0.35 0.84 16 40 H 0.37 7.70 3.12 -40.82 -0.13 7.57 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.06 1.03 6.34 -51.93 -0.33 0.70 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.84 7.91 -51.93 -0.41 0.43 16 45 H 0.06 0.67 8.07 -51.93 -0.42 0.25 16 46 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.07 0.91 7.99 -51.93 -0.41 0.49 16 49 H 0.08 1.04 8.00 -51.93 -0.42 0.62 16 50 H 0.15 1.66 7.76 -52.49 -0.41 1.25 16 51 H 0.16 1.26 8.06 -52.49 -0.42 0.83 16 LS Contribution 403.29 15.07 6.08 6.08 Total: -1.00 -30.95 403.29 -7.97 -38.92 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -7.97 Total: 11.69 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -1.11 Total: 1.03 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: -0.16 Total: -59.53 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.09 Total: -14.35 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.71 Total: 16.17 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -30.95 -7.97 -38.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996513588.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.840 kcal (2) G-P(sol) polarization free energy of solvation -30.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds