Wall clock time and date at job start Wed Apr 1 2020 04:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47303 * 2 1 4 4 O 1.42897 * 109.47507 * 120.00059 * 2 1 3 5 5 C 1.35689 * 116.99915 * 89.99781 * 4 2 1 6 6 C 1.38901 * 119.62092 * 179.73027 * 5 4 2 7 7 C 1.39569 * 118.94146 * 179.73741 * 6 5 4 8 8 C 1.48165 * 120.89315 * 180.26252 * 7 6 5 9 9 O 1.21510 * 120.00485 * 172.72753 * 8 7 6 10 10 N 1.34781 * 119.99633 * 352.72227 * 8 7 6 11 11 C 1.47025 * 125.64749 * 4.90327 * 10 8 7 12 12 C 1.54319 * 107.26799 * 181.02148 * 11 10 8 13 13 H 1.09000 * 110.71954 * 263.82826 * 12 11 10 14 14 N 1.46501 * 110.71784 * 140.55490 * 12 11 10 15 15 C 1.36937 * 120.00096 * 86.45666 * 14 12 11 16 16 H 1.07998 * 120.00154 * 359.97438 * 15 14 12 17 17 C 1.38820 * 120.00245 * 180.02562 * 15 14 12 18 18 N 1.31616 * 119.99766 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 119.99741 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.47079 * 90.00097 * 19 17 15 21 21 H 1.48503 * 109.47039 * 210.00232 * 19 17 15 22 22 H 1.48500 * 109.47309 * 330.00401 * 19 17 15 23 23 C 1.55153 * 102.94416 * 22.19406 * 12 11 10 24 24 C 1.52996 * 111.00913 * 82.57083 * 23 12 11 25 25 C 1.53010 * 111.00335 * 206.38794 * 23 12 11 26 26 C 1.47418 * 125.64814 * 184.59078 * 10 8 7 27 27 C 1.39968 * 118.21892 * 0.52353 * 7 6 5 28 28 C 1.37973 * 119.13498 * 359.73753 * 27 7 6 29 29 N 1.31914 * 120.97657 * 359.97438 * 28 27 7 30 30 H 1.08998 * 109.46691 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46687 * 299.99640 * 1 2 3 32 32 H 1.08997 * 109.47027 * 59.99893 * 1 2 3 33 33 H 1.09001 * 109.47575 * 240.00168 * 2 1 3 34 34 H 1.09009 * 109.46821 * 59.99947 * 3 2 1 35 35 H 1.08998 * 109.47506 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.47128 * 300.00775 * 3 2 1 37 37 H 1.07998 * 120.52558 * 359.97438 * 6 5 4 38 38 H 1.09009 * 109.87851 * 300.43851 * 11 10 8 39 39 H 1.09000 * 109.88303 * 61.44387 * 11 10 8 40 40 H 0.97001 * 119.99951 * 266.44751 * 14 12 11 41 41 H 0.97008 * 119.99255 * 179.97438 * 18 17 15 42 42 H 1.09002 * 109.46916 * 59.99890 * 24 23 12 43 43 H 1.09004 * 109.47520 * 179.97438 * 24 23 12 44 44 H 1.08994 * 109.47012 * 300.00403 * 24 23 12 45 45 H 1.08994 * 109.47037 * 59.99334 * 25 23 12 46 46 H 1.08992 * 109.46982 * 180.02562 * 25 23 12 47 47 H 1.09000 * 109.46491 * 299.99393 * 25 23 12 48 48 H 1.08995 * 110.37219 * 274.74883 * 26 10 8 49 49 H 1.09000 * 110.36645 * 37.07366 * 26 10 8 50 50 H 1.08002 * 120.43549 * 179.71077 * 27 7 6 51 51 H 1.08001 * 119.51502 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2117 -2.0110 1.0652 6 6 2.6797 -2.7192 2.1646 7 6 2.8806 -4.0953 2.0461 8 6 3.3729 -4.8938 3.1929 9 8 3.4168 -6.1056 3.1153 10 7 3.7721 -4.2760 4.3223 11 6 3.6777 -2.8332 4.5890 12 6 4.2771 -2.5860 5.9893 13 1 3.4919 -2.5537 6.7447 14 7 5.0648 -1.3509 6.0053 15 6 4.4515 -0.1507 6.2473 16 1 3.3870 -0.1145 6.4260 17 6 5.1978 1.0198 6.2619 18 7 4.6082 2.1733 6.4940 19 14 7.0388 0.9574 5.9520 20 1 7.3011 1.1018 4.4975 21 1 7.7022 2.0642 6.6870 22 1 7.5767 -0.3434 6.4252 23 6 5.1906 -3.8223 6.1996 24 6 6.5473 -3.6237 5.5209 25 6 5.3651 -4.1284 7.6886 26 6 4.3698 -4.9357 5.4973 27 6 2.6099 -4.6998 0.8130 28 6 2.1528 -3.9217 -0.2306 29 7 1.9689 -2.6241 -0.0803 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.6767 1.9563 0.8901 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9564 -0.8899 37 1 2.8811 -2.2137 3.0975 38 1 4.2446 -2.2799 3.8400 39 1 2.6338 -2.5201 4.5693 40 1 6.0209 -1.3833 5.8445 41 1 5.1298 2.9911 6.5045 42 1 7.0406 -2.7487 5.9441 43 1 7.1679 -4.5048 5.6843 44 1 6.4001 -3.4758 4.4511 45 1 4.3916 -4.3333 8.1339 46 1 6.0100 -4.9990 7.8073 47 1 5.8185 -3.2705 8.1850 48 1 3.5896 -5.3103 6.1599 49 1 5.0248 -5.7486 5.1836 50 1 2.7573 -5.7614 0.6801 51 1 1.9423 -4.3818 -1.1848 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996513588.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:04 Heat of formation + Delta-G solvation = -17.089203 kcal Electronic energy + Delta-G solvation = -32031.344938 eV Core-core repulsion = 27931.757115 eV Total energy + Delta-G solvation = -4099.587823 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.21450 -41.19975 -39.69176 -38.88547 -36.07753 -35.10031 -34.26251 -33.55556 -33.00617 -31.23594 -29.74535 -28.37653 -28.19355 -27.93488 -26.18039 -25.24970 -24.32046 -23.14705 -22.33629 -21.11324 -20.53192 -19.48568 -19.17054 -18.13992 -17.66889 -17.28274 -17.01781 -16.74244 -16.57480 -16.45200 -15.90738 -15.44509 -15.25209 -15.21500 -15.14784 -14.80272 -14.62962 -14.32120 -14.22115 -13.88949 -13.79055 -13.53092 -13.32167 -13.30979 -13.21659 -12.99177 -12.89237 -12.83606 -12.81513 -12.48898 -12.17948 -11.99519 -11.94884 -11.89293 -11.78263 -11.66485 -11.45907 -11.32009 -11.06559 -10.99892 -10.59743 -9.83792 -9.56169 -9.34923 -8.00545 -5.35024 -0.45097 0.06482 1.36260 1.39236 1.45802 1.66632 1.72136 1.97628 2.47989 2.70639 3.07005 3.23199 3.28180 3.52088 3.57187 3.66688 3.85422 3.87330 3.97041 4.00964 4.01541 4.04187 4.16785 4.24251 4.26140 4.35397 4.54670 4.58440 4.66995 4.67402 4.68911 4.75510 4.79976 4.81279 4.83534 4.84937 4.93199 4.96108 5.02658 5.06607 5.14322 5.17482 5.20760 5.23530 5.34546 5.35257 5.48079 5.79624 6.22071 6.23612 6.27220 6.69796 6.85348 7.08297 7.82019 8.00582 9.20350 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007747 B = 0.004734 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3613.587486 B = 5913.101302 C = 8819.513335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.075 3.925 3 C -0.151 4.151 4 O -0.318 6.318 5 C 0.310 3.690 6 C -0.205 4.205 7 C -0.062 4.062 8 C 0.572 3.428 9 O -0.560 6.560 10 N -0.598 5.598 11 C 0.075 3.925 12 C 0.176 3.824 13 H 0.073 0.927 14 N -0.736 5.736 15 C -0.228 4.228 16 H 0.064 0.936 17 C -0.053 4.053 18 N -0.978 5.978 19 Si 0.937 3.063 20 H -0.284 1.284 21 H -0.297 1.297 22 H -0.248 1.248 23 C -0.079 4.079 24 C -0.136 4.136 25 C -0.127 4.127 26 C 0.120 3.880 27 C -0.157 4.157 28 C 0.142 3.858 29 N -0.531 5.531 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.105 0.895 37 H 0.169 0.831 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.370 0.630 41 H 0.256 0.744 42 H 0.051 0.949 43 H 0.082 0.918 44 H 0.045 0.955 45 H 0.067 0.933 46 H 0.078 0.922 47 H 0.051 0.949 48 H 0.087 0.913 49 H 0.087 0.913 50 H 0.163 0.837 51 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.174 -13.310 -11.904 18.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.020 3.980 3 C -0.208 4.208 4 O -0.226 6.226 5 C 0.132 3.868 6 C -0.226 4.226 7 C -0.072 4.072 8 C 0.362 3.638 9 O -0.440 6.440 10 N -0.330 5.330 11 C -0.050 4.050 12 C 0.066 3.934 13 H 0.091 0.909 14 N -0.380 5.380 15 C -0.359 4.359 16 H 0.082 0.918 17 C -0.245 4.245 18 N -0.628 5.628 19 Si 0.765 3.235 20 H -0.210 1.210 21 H -0.224 1.224 22 H -0.172 1.172 23 C -0.080 4.080 24 C -0.194 4.194 25 C -0.185 4.185 26 C -0.002 4.002 27 C -0.177 4.177 28 C -0.013 4.013 29 N -0.256 5.256 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.114 0.886 33 H 0.109 0.891 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.124 0.876 37 H 0.186 0.814 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.207 0.793 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.100 0.900 44 H 0.064 0.936 45 H 0.086 0.914 46 H 0.097 0.903 47 H 0.070 0.930 48 H 0.105 0.895 49 H 0.105 0.895 50 H 0.181 0.819 51 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -3.582 -13.108 -12.389 18.388 hybrid contribution 1.131 0.464 0.475 1.311 sum -2.451 -12.645 -11.914 17.545 Atomic orbital electron populations 1.22177 0.93762 1.02386 1.03569 1.22602 0.95331 0.93176 0.86921 1.21955 1.01590 0.93310 1.03932 1.86387 1.80114 1.15924 1.40199 1.19818 0.92029 0.85099 0.89873 1.22694 1.04102 0.94100 1.01692 1.20113 0.99322 0.92448 0.95323 1.17937 0.77684 0.86546 0.81651 1.90729 1.56836 1.13921 1.82500 1.48354 1.59874 1.09245 1.15496 1.23413 1.01045 0.79773 1.00752 1.21423 0.93586 0.85425 0.92976 0.90861 1.42789 1.06839 1.02366 1.85959 1.19011 0.93569 0.84333 1.38982 0.91827 1.25337 1.01674 0.94943 1.02520 1.69862 1.36588 0.98201 1.58119 0.85701 0.82071 0.78023 0.77744 1.21023 1.22420 1.17215 1.22025 0.95097 0.93502 0.97421 1.21712 0.95685 1.02345 0.99634 1.21653 1.02889 1.02080 0.91838 1.22527 0.96778 0.95295 0.85578 1.22308 1.00726 1.03055 0.91642 1.23070 0.91711 0.86604 0.99938 1.67210 1.20653 1.13837 1.23899 0.92985 0.92565 0.88564 0.89144 0.92448 0.92749 0.87613 0.81439 0.91086 0.91019 0.79345 0.93451 0.93045 0.89963 0.93628 0.91418 0.90272 0.92975 0.89520 0.89474 0.81945 0.77547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.39 9.53 71.98 0.69 -2.70 16 2 C 0.08 1.86 3.11 30.59 0.10 1.95 16 3 C -0.15 -3.37 9.56 71.98 0.69 -2.68 16 4 O -0.32 -10.29 9.76 -90.08 -0.88 -11.17 16 5 C 0.31 9.51 7.45 84.80 0.63 10.14 16 6 C -0.21 -6.41 8.61 22.75 0.20 -6.21 16 7 C -0.06 -1.77 5.90 -19.90 -0.12 -1.89 16 8 C 0.57 17.74 7.83 86.88 0.68 18.42 16 9 O -0.56 -19.13 16.76 -3.75 -0.06 -19.20 16 10 N -0.60 -17.54 3.31 -815.28 -2.70 -20.24 16 11 C 0.08 2.44 4.32 86.73 0.37 2.82 16 12 C 0.18 5.95 2.85 46.18 0.13 6.08 16 13 H 0.07 2.55 8.02 -2.39 -0.02 2.53 16 14 N -0.74 -31.11 4.88 -317.33 -1.55 -32.66 16 15 C -0.23 -12.08 10.46 84.04 0.88 -11.20 16 16 H 0.06 3.69 8.06 -2.91 -0.02 3.67 16 17 C -0.05 -2.97 5.50 84.86 0.47 -2.50 16 18 N -0.98 -60.60 13.97 21.65 0.30 -60.29 16 19 Si 0.94 43.64 27.73 68.60 1.90 45.54 16 20 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 21 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 22 H -0.25 -10.22 6.52 99.48 0.65 -9.57 16 23 C -0.08 -2.08 0.87 -50.71 -0.04 -2.12 16 24 C -0.14 -3.60 7.94 71.98 0.57 -3.03 16 25 C -0.13 -2.85 8.68 71.99 0.62 -2.23 16 26 C 0.12 3.00 5.83 86.93 0.51 3.50 16 27 C -0.16 -3.61 9.67 22.63 0.22 -3.39 16 28 C 0.14 2.86 11.17 84.62 0.94 3.81 16 29 N -0.53 -13.69 8.61 -309.13 -2.66 -16.35 16 30 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.09 2.14 6.98 -2.39 -0.02 2.12 16 34 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.17 5.65 2.95 -3.25 -0.01 5.64 16 38 H 0.07 2.54 6.56 -2.38 -0.02 2.52 16 39 H 0.07 2.37 6.82 -2.39 -0.02 2.36 16 40 H 0.37 15.24 3.12 -92.71 -0.29 14.95 16 41 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 42 H 0.05 1.51 6.34 -2.39 -0.02 1.49 16 43 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 44 H 0.04 1.29 7.91 -2.39 -0.02 1.27 16 45 H 0.07 1.39 8.07 -2.39 -0.02 1.37 16 46 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.09 1.95 7.99 -2.39 -0.02 1.93 16 49 H 0.09 2.07 8.00 -2.39 -0.02 2.05 16 50 H 0.16 3.21 7.76 -2.91 -0.02 3.19 16 51 H 0.21 2.25 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -69.17 403.29 2.48 -66.69 By element: Atomic # 1 Polarization: 38.32 SS G_CDS: 0.59 Total: 38.90 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: 7.54 Total: 8.78 kcal Atomic # 7 Polarization: -122.93 SS G_CDS: -6.61 Total: -129.54 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -0.94 Total: -30.37 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.90 Total: 45.54 kcal Total: -69.17 2.48 -66.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996513588.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.601 kcal (2) G-P(sol) polarization free energy of solvation -69.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds