Wall clock time and date at job start Wed Apr 1 2020 04:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47199 * 2 1 4 4 O 1.42898 * 109.47298 * 120.00276 * 2 1 3 5 5 C 1.35427 * 117.00517 * 150.00096 * 4 2 1 6 6 N 1.32232 * 119.79628 * 359.72621 * 5 4 2 7 7 C 1.31882 * 121.79848 * 180.27920 * 6 5 4 8 8 C 1.38349 * 121.18714 * 359.97438 * 7 6 5 9 9 C 1.38338 * 119.46101 * 0.02562 * 8 7 6 10 10 C 1.39985 * 118.34441 * 359.97438 * 9 8 7 11 11 C 1.47531 * 120.59605 * 179.97438 * 10 9 8 12 12 O 1.21596 * 119.99787 * 133.99490 * 11 10 9 13 13 N 1.34775 * 120.00086 * 313.99918 * 11 10 9 14 14 C 1.47018 * 125.65176 * 4.86916 * 13 11 10 15 15 C 1.54314 * 107.27468 * 181.02480 * 14 13 11 16 16 H 1.09002 * 110.72134 * 263.83507 * 15 14 13 17 17 N 1.46498 * 110.72122 * 140.55800 * 15 14 13 18 18 C 1.36933 * 120.00135 * 86.45689 * 17 15 14 19 19 H 1.08008 * 120.00207 * 359.97438 * 18 17 15 20 20 C 1.38810 * 120.00256 * 179.97438 * 18 17 15 21 21 N 1.31618 * 120.00128 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00365 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47017 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47143 * 119.99993 * 22 20 18 25 25 H 1.48498 * 109.47440 * 240.00517 * 22 20 18 26 26 C 1.55157 * 102.94260 * 22.19085 * 15 14 13 27 27 C 1.53004 * 111.00222 * 82.57258 * 26 15 14 28 28 C 1.53001 * 111.00774 * 206.38523 * 26 15 14 29 29 C 1.47422 * 125.64660 * 184.56387 * 13 11 10 30 30 H 1.08997 * 109.47206 * 300.00078 * 1 2 3 31 31 H 1.09007 * 109.46728 * 60.00208 * 1 2 3 32 32 H 1.08998 * 109.46992 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47334 * 239.99875 * 2 1 3 34 34 H 1.08997 * 109.47105 * 59.99860 * 3 2 1 35 35 H 1.09004 * 109.47035 * 179.97438 * 3 2 1 36 36 H 1.08998 * 109.46998 * 300.00121 * 3 2 1 37 37 H 1.08000 * 119.40942 * 179.97438 * 7 6 5 38 38 H 1.08004 * 120.27366 * 180.02562 * 8 7 6 39 39 H 1.07999 * 120.83141 * 179.97438 * 9 8 7 40 40 H 1.09004 * 109.87955 * 300.44650 * 14 13 11 41 41 H 1.09005 * 109.87719 * 61.45047 * 14 13 11 42 42 H 0.96999 * 119.99921 * 266.44761 * 17 15 14 43 43 H 0.96993 * 120.00472 * 179.97438 * 21 20 18 44 44 H 1.09005 * 109.46720 * 60.00178 * 27 26 15 45 45 H 1.09002 * 109.47326 * 179.97438 * 27 26 15 46 46 H 1.08997 * 109.47352 * 300.00350 * 27 26 15 47 47 H 1.09000 * 109.46895 * 59.99870 * 28 26 15 48 48 H 1.08996 * 109.47225 * 180.02562 * 28 26 15 49 49 H 1.09001 * 109.46732 * 300.00313 * 28 26 15 50 50 H 1.09003 * 110.36803 * 274.74961 * 29 13 11 51 51 H 1.09003 * 110.36821 * 37.07059 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 3.1965 -1.3118 1.0654 6 7 3.8560 -1.2944 -0.0805 7 6 5.0150 -1.9069 -0.2247 8 6 5.5953 -2.5983 0.8238 9 6 4.9487 -2.6493 2.0457 10 6 3.7197 -1.9918 2.1753 11 6 2.9873 -2.0144 3.4558 12 8 2.5142 -0.9878 3.9038 13 7 2.8427 -3.1730 4.1290 14 6 3.4458 -4.4612 3.7571 15 6 2.9845 -5.5011 4.7997 16 1 3.7357 -5.6246 5.5798 17 7 2.6874 -6.7834 4.1564 18 6 3.6892 -7.6936 3.9489 19 1 4.6984 -7.4661 4.2591 20 6 3.4077 -8.9088 3.3399 21 7 2.1778 -9.1864 2.9623 22 14 4.7744 -10.1502 3.0561 23 1 6.0558 -9.6013 3.5681 24 1 4.4548 -11.4108 3.7731 25 1 4.8991 -10.4256 1.6023 26 6 1.6928 -4.8645 5.3775 27 6 0.4901 -5.1500 4.4759 28 6 1.4325 -5.3511 6.8045 29 6 2.0586 -3.3571 5.3637 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 3.1300 1.4425 0.0005 36 1 1.6766 1.9563 -0.8900 37 1 5.5204 -1.8681 -1.1784 38 1 6.5452 -3.0943 0.6895 39 1 5.3814 -3.1830 2.8790 40 1 3.1069 -4.7562 2.7640 41 1 4.5327 -4.3785 3.7683 42 1 1.7811 -6.9877 3.8776 43 1 1.9811 -10.0353 2.5364 44 1 0.3434 -6.2272 4.3962 45 1 -0.4019 -4.6930 4.9044 46 1 0.6718 -4.7338 3.4850 47 1 2.2730 -5.0755 7.4413 48 1 0.5212 -4.8899 7.1851 49 1 1.3176 -6.4351 6.8034 50 1 2.6599 -3.1022 6.2365 51 1 1.1550 -2.7482 5.3337 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996739129.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:11 Heat of formation + Delta-G solvation = -18.782788 kcal Electronic energy + Delta-G solvation = -32057.782315 eV Core-core repulsion = 27958.121052 eV Total energy + Delta-G solvation = -4099.661263 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.99803 -39.72751 -38.28797 -37.70631 -34.16394 -33.42571 -33.36719 -32.34127 -30.84299 -30.35246 -27.60319 -27.39454 -26.99846 -26.49179 -24.57814 -23.85162 -23.50510 -21.59257 -21.11849 -19.71999 -18.72644 -18.40560 -17.28524 -17.01176 -16.86508 -15.85073 -15.59791 -15.56037 -15.24659 -14.62082 -14.50606 -14.18500 -14.08249 -13.78575 -13.62396 -13.44471 -13.17523 -13.08018 -12.73391 -12.52941 -12.43527 -12.41911 -12.38803 -12.06987 -12.01137 -11.97516 -11.54477 -11.25868 -11.07160 -11.05275 -10.94987 -10.87612 -10.59301 -10.51441 -10.22591 -10.09955 -9.95124 -9.85472 -9.69104 -9.48087 -9.01997 -8.57486 -8.26670 -7.11244 -5.88256 -3.18550 0.77257 1.20436 2.84031 2.95635 3.21870 3.36086 3.42107 3.44359 3.74006 4.13292 4.48486 4.62052 4.69129 4.76477 4.85452 4.88772 4.95090 5.05660 5.06782 5.11509 5.19955 5.38962 5.40654 5.48857 5.57249 5.60620 5.63419 5.67927 5.68896 5.78466 5.81929 5.85383 5.95172 5.99567 6.01573 6.04357 6.05082 6.12464 6.21985 6.31486 6.33118 6.37371 6.42508 6.60964 6.64113 6.74375 6.89170 7.21951 7.60277 7.67209 7.81481 8.29751 8.38924 9.42146 9.96687 10.31687 11.33904 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010782 B = 0.003467 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.198471 B = 8073.146371 C = 9261.015114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.079 3.921 3 C -0.166 4.166 4 O -0.281 6.281 5 C 0.368 3.632 6 N -0.545 5.545 7 C 0.157 3.843 8 C -0.216 4.216 9 C -0.008 4.008 10 C -0.195 4.195 11 C 0.583 3.417 12 O -0.534 6.534 13 N -0.606 5.606 14 C 0.071 3.929 15 C 0.181 3.819 16 H 0.066 0.934 17 N -0.711 5.711 18 C -0.247 4.247 19 H 0.072 0.928 20 C -0.008 4.008 21 N -0.929 5.929 22 Si 0.906 3.094 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.086 4.086 27 C -0.132 4.132 28 C -0.129 4.129 29 C 0.120 3.880 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.162 0.838 38 H 0.143 0.857 39 H 0.149 0.851 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.390 0.610 43 H 0.256 0.744 44 H 0.072 0.928 45 H 0.048 0.952 46 H 0.053 0.947 47 H 0.053 0.947 48 H 0.050 0.950 49 H 0.068 0.932 50 H 0.066 0.934 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.633 16.163 -3.450 16.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.022 3.978 3 C -0.224 4.224 4 O -0.186 6.186 5 C 0.188 3.812 6 N -0.268 5.268 7 C 0.001 3.999 8 C -0.236 4.236 9 C -0.034 4.034 10 C -0.201 4.201 11 C 0.371 3.629 12 O -0.412 6.412 13 N -0.339 5.339 14 C -0.054 4.054 15 C 0.069 3.931 16 H 0.084 0.916 17 N -0.354 5.354 18 C -0.378 4.378 19 H 0.090 0.910 20 C -0.204 4.204 21 N -0.576 5.576 22 Si 0.737 3.263 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.087 4.087 27 C -0.189 4.189 28 C -0.186 4.186 29 C -0.002 4.002 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.180 0.820 38 H 0.161 0.839 39 H 0.167 0.833 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.227 0.773 43 H 0.066 0.934 44 H 0.091 0.909 45 H 0.067 0.933 46 H 0.072 0.928 47 H 0.072 0.928 48 H 0.069 0.931 49 H 0.087 0.913 50 H 0.084 0.916 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.940 17.128 -3.741 17.557 hybrid contribution 1.033 -1.301 -0.012 1.661 sum 1.974 15.827 -3.753 16.385 Atomic orbital electron populations 1.21898 0.92805 1.03177 1.02903 1.22396 0.94672 0.92807 0.87875 1.22196 1.01980 0.95651 1.02531 1.86424 1.30773 1.63321 1.38127 1.19640 0.85767 0.87520 0.88289 1.67343 1.11014 1.24722 1.23762 1.22579 0.89050 0.89531 0.98776 1.21925 1.03196 1.04569 0.93903 1.21806 0.91595 0.91745 0.98229 1.19843 0.98887 1.06565 0.94823 1.17419 0.79849 0.82544 0.83138 1.90771 1.49722 1.32062 1.68615 1.48371 1.50182 1.08890 1.26492 1.23473 0.96962 0.82723 1.02278 1.21206 0.93685 0.85922 0.92334 0.91586 1.42549 1.09863 1.12467 1.70474 1.19287 0.90047 0.95536 1.32965 0.90989 1.24746 0.96414 0.98080 1.01188 1.69659 1.17805 1.24128 1.46040 0.86144 0.81119 0.81526 0.77511 1.20472 1.21819 1.21829 1.22021 0.96974 0.93126 0.96620 1.21642 0.95706 1.02706 0.98878 1.21645 1.00754 1.02238 0.93998 1.22348 0.95404 0.96248 0.86247 0.91487 0.90549 0.91734 0.89303 0.91825 0.92119 0.91211 0.82044 0.83871 0.83342 0.90870 0.92381 0.77281 0.93391 0.90909 0.93264 0.92792 0.92792 0.93062 0.91322 0.91572 0.90829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.56 37.16 0.36 -1.19 16 2 C 0.08 0.97 3.11 -26.73 -0.08 0.88 16 3 C -0.17 -1.76 9.53 37.16 0.35 -1.41 16 4 O -0.28 -4.52 8.74 -29.45 -0.26 -4.78 16 5 C 0.37 5.82 7.45 -16.61 -0.12 5.70 16 6 N -0.54 -7.47 8.63 -12.98 -0.11 -7.58 16 7 C 0.16 1.74 11.17 -17.49 -0.20 1.54 16 8 C -0.22 -2.36 10.09 -39.50 -0.40 -2.76 16 9 C -0.01 -0.11 8.66 -38.89 -0.34 -0.44 16 10 C -0.20 -3.13 5.46 -104.69 -0.57 -3.70 16 11 C 0.58 10.40 7.19 -12.47 -0.09 10.31 16 12 O -0.53 -10.92 16.72 -6.20 -0.10 -11.02 16 13 N -0.61 -10.07 3.31 -171.61 -0.57 -10.64 16 14 C 0.07 1.22 5.05 -3.07 -0.02 1.20 16 15 C 0.18 3.30 2.85 -66.10 -0.19 3.11 16 16 H 0.07 1.20 8.02 -51.93 -0.42 0.79 16 17 N -0.71 -16.22 5.08 -51.66 -0.26 -16.48 16 18 C -0.25 -6.31 9.98 -15.06 -0.15 -6.46 16 19 H 0.07 1.78 7.83 -52.48 -0.41 1.36 16 20 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 21 N -0.93 -26.56 13.06 55.49 0.72 -25.83 16 22 Si 0.91 21.21 29.55 -169.99 -5.02 16.19 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 C -0.09 -1.35 0.87 -152.24 -0.13 -1.49 16 27 C -0.13 -2.17 7.94 37.16 0.30 -1.88 16 28 C -0.13 -1.81 8.68 37.16 0.32 -1.48 16 29 C 0.12 1.85 5.83 -2.41 -0.01 1.83 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 1.09 6.98 -51.93 -0.36 0.72 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 39 H 0.15 1.79 5.86 -52.49 -0.31 1.48 16 40 H 0.07 1.41 8.03 -51.93 -0.42 0.99 16 41 H 0.06 0.90 5.94 -51.93 -0.31 0.59 16 42 H 0.39 9.50 5.26 -40.82 -0.21 9.28 16 43 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.07 1.34 6.34 -51.93 -0.33 1.01 16 45 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.05 0.96 7.91 -51.93 -0.41 0.55 16 47 H 0.05 0.69 8.07 -51.93 -0.42 0.27 16 48 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 49 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 50 H 0.07 0.94 7.99 -51.93 -0.41 0.52 16 51 H 0.07 1.15 8.00 -51.93 -0.42 0.73 16 LS Contribution 409.27 15.07 6.17 6.17 Total: -1.00 -31.56 409.27 -8.72 -40.28 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -8.21 Total: 10.25 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -1.07 Total: 3.46 kcal Atomic # 7 Polarization: -60.32 SS G_CDS: -0.22 Total: -60.53 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.36 Total: -15.80 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -31.56 -8.72 -40.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996739129.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.492 kcal (2) G-P(sol) polarization free energy of solvation -31.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds