Wall clock time and date at job start Wed Apr 1 2020 04:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47199 * 2 1 4 4 O 1.42898 * 109.47298 * 120.00276 * 2 1 3 5 5 C 1.35427 * 117.00517 * 150.00096 * 4 2 1 6 6 N 1.32232 * 119.79628 * 359.72621 * 5 4 2 7 7 C 1.31882 * 121.79848 * 180.27920 * 6 5 4 8 8 C 1.38349 * 121.18714 * 359.97438 * 7 6 5 9 9 C 1.38338 * 119.46101 * 0.02562 * 8 7 6 10 10 C 1.39985 * 118.34441 * 359.97438 * 9 8 7 11 11 C 1.47531 * 120.59605 * 179.97438 * 10 9 8 12 12 O 1.21596 * 119.99787 * 133.99490 * 11 10 9 13 13 N 1.34775 * 120.00086 * 313.99918 * 11 10 9 14 14 C 1.47018 * 125.65176 * 4.86916 * 13 11 10 15 15 C 1.54314 * 107.27468 * 181.02480 * 14 13 11 16 16 H 1.09002 * 110.72134 * 263.83507 * 15 14 13 17 17 N 1.46498 * 110.72122 * 140.55800 * 15 14 13 18 18 C 1.36933 * 120.00135 * 86.45689 * 17 15 14 19 19 H 1.08008 * 120.00207 * 359.97438 * 18 17 15 20 20 C 1.38810 * 120.00256 * 179.97438 * 18 17 15 21 21 N 1.31618 * 120.00128 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00365 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47017 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47143 * 119.99993 * 22 20 18 25 25 H 1.48498 * 109.47440 * 240.00517 * 22 20 18 26 26 C 1.55157 * 102.94260 * 22.19085 * 15 14 13 27 27 C 1.53004 * 111.00222 * 82.57258 * 26 15 14 28 28 C 1.53001 * 111.00774 * 206.38523 * 26 15 14 29 29 C 1.47422 * 125.64660 * 184.56387 * 13 11 10 30 30 H 1.08997 * 109.47206 * 300.00078 * 1 2 3 31 31 H 1.09007 * 109.46728 * 60.00208 * 1 2 3 32 32 H 1.08998 * 109.46992 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47334 * 239.99875 * 2 1 3 34 34 H 1.08997 * 109.47105 * 59.99860 * 3 2 1 35 35 H 1.09004 * 109.47035 * 179.97438 * 3 2 1 36 36 H 1.08998 * 109.46998 * 300.00121 * 3 2 1 37 37 H 1.08000 * 119.40942 * 179.97438 * 7 6 5 38 38 H 1.08004 * 120.27366 * 180.02562 * 8 7 6 39 39 H 1.07999 * 120.83141 * 179.97438 * 9 8 7 40 40 H 1.09004 * 109.87955 * 300.44650 * 14 13 11 41 41 H 1.09005 * 109.87719 * 61.45047 * 14 13 11 42 42 H 0.96999 * 119.99921 * 266.44761 * 17 15 14 43 43 H 0.96993 * 120.00472 * 179.97438 * 21 20 18 44 44 H 1.09005 * 109.46720 * 60.00178 * 27 26 15 45 45 H 1.09002 * 109.47326 * 179.97438 * 27 26 15 46 46 H 1.08997 * 109.47352 * 300.00350 * 27 26 15 47 47 H 1.09000 * 109.46895 * 59.99870 * 28 26 15 48 48 H 1.08996 * 109.47225 * 180.02562 * 28 26 15 49 49 H 1.09001 * 109.46732 * 300.00313 * 28 26 15 50 50 H 1.09003 * 110.36803 * 274.74961 * 29 13 11 51 51 H 1.09003 * 110.36821 * 37.07059 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 3.1965 -1.3118 1.0654 6 7 3.8560 -1.2944 -0.0805 7 6 5.0150 -1.9069 -0.2247 8 6 5.5953 -2.5983 0.8238 9 6 4.9487 -2.6493 2.0457 10 6 3.7197 -1.9918 2.1753 11 6 2.9873 -2.0144 3.4558 12 8 2.5142 -0.9878 3.9038 13 7 2.8427 -3.1730 4.1290 14 6 3.4458 -4.4612 3.7571 15 6 2.9845 -5.5011 4.7997 16 1 3.7357 -5.6246 5.5798 17 7 2.6874 -6.7834 4.1564 18 6 3.6892 -7.6936 3.9489 19 1 4.6984 -7.4661 4.2591 20 6 3.4077 -8.9088 3.3399 21 7 2.1778 -9.1864 2.9623 22 14 4.7744 -10.1502 3.0561 23 1 6.0558 -9.6013 3.5681 24 1 4.4548 -11.4108 3.7731 25 1 4.8991 -10.4256 1.6023 26 6 1.6928 -4.8645 5.3775 27 6 0.4901 -5.1500 4.4759 28 6 1.4325 -5.3511 6.8045 29 6 2.0586 -3.3571 5.3637 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 3.1300 1.4425 0.0005 36 1 1.6766 1.9563 -0.8900 37 1 5.5204 -1.8681 -1.1784 38 1 6.5452 -3.0943 0.6895 39 1 5.3814 -3.1830 2.8790 40 1 3.1069 -4.7562 2.7640 41 1 4.5327 -4.3785 3.7683 42 1 1.7811 -6.9877 3.8776 43 1 1.9811 -10.0353 2.5364 44 1 0.3434 -6.2272 4.3962 45 1 -0.4019 -4.6930 4.9044 46 1 0.6718 -4.7338 3.4850 47 1 2.2730 -5.0755 7.4413 48 1 0.5212 -4.8899 7.1851 49 1 1.3176 -6.4351 6.8034 50 1 2.6599 -3.1022 6.2365 51 1 1.1550 -2.7482 5.3337 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996739129.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:10 Heat of formation + Delta-G solvation = -38.451601 kcal Electronic energy + Delta-G solvation = -32058.635218 eV Core-core repulsion = 27958.121052 eV Total energy + Delta-G solvation = -4100.514167 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.10784 -41.01990 -39.34793 -39.07122 -35.86598 -34.82618 -34.29934 -33.47205 -32.63158 -31.36821 -29.19753 -28.33041 -28.23594 -27.71129 -25.96327 -25.34707 -24.57272 -22.97801 -22.15430 -20.97924 -20.14103 -19.44479 -19.12620 -18.24651 -18.01041 -17.09896 -16.92450 -16.72354 -16.34540 -16.21220 -15.73564 -15.52923 -15.39820 -15.03945 -14.81895 -14.67674 -14.41943 -14.26151 -14.15487 -13.80028 -13.61671 -13.36523 -13.34302 -13.26305 -13.22506 -12.96922 -12.91625 -12.85831 -12.79931 -12.55967 -12.10672 -12.01714 -11.97272 -11.89294 -11.80896 -11.50552 -11.37856 -11.22458 -11.03594 -10.89765 -10.59510 -9.72967 -9.51367 -9.01806 -7.91017 -5.20127 -0.26108 0.20457 1.51411 1.52679 1.56717 1.61650 1.91837 1.96734 2.59312 2.70300 3.14447 3.36769 3.40714 3.64492 3.75467 3.80517 3.84064 3.89226 3.94914 3.97752 4.11777 4.18316 4.20438 4.28726 4.39186 4.43526 4.45445 4.63795 4.65146 4.74718 4.77144 4.77613 4.80799 4.82378 4.84348 4.92195 5.00839 5.06414 5.07795 5.13873 5.15843 5.19766 5.21822 5.27536 5.41240 5.43037 5.51402 5.58559 6.20896 6.29910 6.42000 6.70885 7.03246 7.38469 8.10869 8.35091 9.32403 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010782 B = 0.003467 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.198471 B = 8073.146371 C = 9261.015114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.070 3.930 3 C -0.158 4.158 4 O -0.309 6.309 5 C 0.348 3.652 6 N -0.552 5.552 7 C 0.160 3.840 8 C -0.206 4.206 9 C -0.014 4.014 10 C -0.228 4.228 11 C 0.582 3.418 12 O -0.568 6.568 13 N -0.604 5.604 14 C 0.087 3.913 15 C 0.175 3.825 16 H 0.075 0.925 17 N -0.722 5.722 18 C -0.237 4.237 19 H 0.083 0.917 20 C -0.070 4.070 21 N -0.969 5.969 22 Si 0.967 3.033 23 H -0.261 1.261 24 H -0.299 1.299 25 H -0.298 1.298 26 C -0.078 4.078 27 C -0.125 4.125 28 C -0.123 4.123 29 C 0.121 3.879 30 H 0.060 0.940 31 H 0.106 0.894 32 H 0.052 0.948 33 H 0.088 0.912 34 H 0.055 0.945 35 H 0.048 0.952 36 H 0.097 0.903 37 H 0.204 0.796 38 H 0.180 0.820 39 H 0.158 0.842 40 H 0.047 0.953 41 H 0.077 0.923 42 H 0.379 0.621 43 H 0.249 0.751 44 H 0.050 0.950 45 H 0.070 0.930 46 H 0.033 0.967 47 H 0.070 0.930 48 H 0.072 0.928 49 H 0.048 0.952 50 H 0.086 0.914 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.551 17.030 -3.732 17.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.014 3.986 3 C -0.215 4.215 4 O -0.216 6.216 5 C 0.169 3.831 6 N -0.276 5.276 7 C 0.003 3.997 8 C -0.225 4.225 9 C -0.040 4.040 10 C -0.234 4.234 11 C 0.371 3.629 12 O -0.449 6.449 13 N -0.336 5.336 14 C -0.039 4.039 15 C 0.064 3.936 16 H 0.092 0.908 17 N -0.363 5.363 18 C -0.368 4.368 19 H 0.101 0.899 20 C -0.263 4.263 21 N -0.619 5.619 22 Si 0.797 3.203 23 H -0.185 1.185 24 H -0.227 1.227 25 H -0.226 1.226 26 C -0.080 4.080 27 C -0.182 4.182 28 C -0.181 4.181 29 C -0.001 4.001 30 H 0.079 0.921 31 H 0.125 0.875 32 H 0.071 0.929 33 H 0.106 0.894 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.116 0.884 37 H 0.221 0.779 38 H 0.197 0.803 39 H 0.175 0.825 40 H 0.066 0.934 41 H 0.095 0.905 42 H 0.215 0.785 43 H 0.058 0.942 44 H 0.069 0.931 45 H 0.089 0.911 46 H 0.052 0.948 47 H 0.089 0.911 48 H 0.091 0.909 49 H 0.067 0.933 50 H 0.104 0.896 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.888 18.029 -3.995 18.691 hybrid contribution 0.462 -1.491 0.034 1.561 sum 3.350 16.538 -3.961 17.333 Atomic orbital electron populations 1.21921 0.91588 1.02794 1.04051 1.22675 0.95678 0.93352 0.86849 1.22143 1.01147 0.94776 1.03476 1.86387 1.31308 1.63848 1.40013 1.19824 0.86147 0.88074 0.89010 1.67429 1.12002 1.25309 1.22826 1.23382 0.88015 0.87815 1.00470 1.22350 1.04029 1.03555 0.92610 1.22018 0.90803 0.91484 0.99665 1.19894 1.00353 1.08921 0.94236 1.17754 0.79436 0.82119 0.83592 1.90733 1.51412 1.33112 1.69598 1.48373 1.50063 1.08429 1.26781 1.23148 0.97896 0.82505 1.00323 1.21403 0.95290 0.84465 0.92441 0.90757 1.42684 1.08957 1.13818 1.70835 1.19693 0.90895 0.95512 1.30729 0.89911 1.25477 0.98250 1.00197 1.02363 1.69814 1.19766 1.24307 1.48036 0.85168 0.79481 0.79023 0.76651 1.18540 1.22689 1.22571 1.21977 0.95328 0.93200 0.97448 1.21557 0.97231 1.01139 0.98303 1.21608 1.02607 1.00999 0.92872 1.22427 0.95636 0.95531 0.86493 0.92134 0.87518 0.92865 0.89432 0.92636 0.93281 0.88399 0.77939 0.80270 0.82487 0.93410 0.90459 0.78498 0.94202 0.93100 0.91082 0.94774 0.91091 0.90943 0.93254 0.89586 0.91060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 9.56 71.98 0.69 -2.30 16 2 C 0.07 1.72 3.11 30.59 0.10 1.82 16 3 C -0.16 -3.27 9.53 71.98 0.69 -2.59 16 4 O -0.31 -10.28 8.74 -76.24 -0.67 -10.95 16 5 C 0.35 11.16 7.45 85.13 0.63 11.79 16 6 N -0.55 -14.60 8.63 -308.01 -2.66 -17.26 16 7 C 0.16 3.11 11.17 84.71 0.95 4.05 16 8 C -0.21 -3.92 10.09 22.32 0.23 -3.70 16 9 C -0.01 -0.36 8.66 22.72 0.20 -0.16 16 10 C -0.23 -7.34 5.46 -19.91 -0.11 -7.45 16 11 C 0.58 21.06 7.19 86.69 0.62 21.68 16 12 O -0.57 -23.80 16.72 6.96 0.12 -23.68 16 13 N -0.60 -19.93 3.31 -815.12 -2.70 -22.62 16 14 C 0.09 2.91 5.05 86.73 0.44 3.35 16 15 C 0.17 6.23 2.85 46.18 0.13 6.36 16 16 H 0.07 2.56 8.02 -2.39 -0.02 2.54 16 17 N -0.72 -33.07 5.08 -317.34 -1.61 -34.68 16 18 C -0.24 -11.96 9.98 84.03 0.84 -11.12 16 19 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 20 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 21 N -0.97 -56.66 13.06 21.65 0.28 -56.38 16 22 Si 0.97 43.57 29.55 68.60 2.03 45.60 16 23 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 24 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 25 H -0.30 -13.64 7.11 99.48 0.71 -12.94 16 26 C -0.08 -2.40 0.87 -50.71 -0.04 -2.44 16 27 C -0.12 -4.17 7.94 71.98 0.57 -3.60 16 28 C -0.12 -3.25 8.68 71.98 0.62 -2.62 16 29 C 0.12 3.60 5.83 86.93 0.51 4.10 16 30 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.11 1.47 8.14 -2.38 -0.02 1.45 16 32 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.09 2.13 6.98 -2.38 -0.02 2.11 16 34 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 36 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.20 2.15 8.06 -2.91 -0.02 2.12 16 38 H 0.18 2.09 8.06 -2.91 -0.02 2.06 16 39 H 0.16 3.51 5.86 -2.91 -0.02 3.49 16 40 H 0.05 1.86 8.03 -2.38 -0.02 1.85 16 41 H 0.08 2.28 5.94 -2.38 -0.01 2.27 16 42 H 0.38 19.00 5.26 -92.71 -0.49 18.52 16 43 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 44 H 0.05 1.93 6.34 -2.38 -0.02 1.91 16 45 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.03 1.24 7.91 -2.39 -0.02 1.22 16 47 H 0.07 1.63 8.07 -2.39 -0.02 1.61 16 48 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 49 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 50 H 0.09 2.24 7.99 -2.39 -0.02 2.22 16 51 H 0.07 2.18 8.00 -2.39 -0.02 2.16 16 Total: -1.00 -70.80 409.27 2.75 -68.05 By element: Atomic # 1 Polarization: 37.62 SS G_CDS: 0.44 Total: 38.06 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: 7.52 Total: 13.86 kcal Atomic # 7 Polarization: -124.25 SS G_CDS: -6.69 Total: -130.93 kcal Atomic # 8 Polarization: -34.08 SS G_CDS: -0.55 Total: -34.63 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -70.80 2.75 -68.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996739129.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.601 kcal (2) G-P(sol) polarization free energy of solvation -70.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds