Wall clock time and date at job start Wed Apr 1 2020 05:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47178 * 2 1 4 4 O 1.42901 * 109.46921 * 119.99998 * 2 1 3 5 5 C 1.35671 * 116.99868 * 155.47117 * 4 2 1 6 6 C 1.38939 * 120.57911 * 5.29391 * 5 4 2 7 7 N 1.31631 * 120.79373 * 180.28750 * 6 5 4 8 8 C 1.31912 * 122.14555 * 359.71522 * 7 6 5 9 9 C 1.37959 * 121.07220 * 359.97438 * 8 7 6 10 10 C 1.39954 * 119.07196 * 0.02562 * 9 8 7 11 11 C 1.47842 * 120.96396 * 180.02562 * 10 9 8 12 12 O 1.21544 * 119.99936 * 180.02562 * 11 10 9 13 13 N 1.34773 * 119.99864 * 0.02562 * 11 10 9 14 14 C 1.46498 * 120.00120 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47603 * 180.02562 * 14 13 11 16 16 C 1.53359 * 109.41761 * 295.12707 * 15 14 13 17 17 C 1.53184 * 109.14858 * 178.67316 * 16 15 14 18 18 N 1.46923 * 108.89675 * 54.57576 * 17 16 15 19 19 C 1.36940 * 120.62967 * 126.33642 * 18 17 16 20 20 H 1.07996 * 120.00357 * 331.53654 * 19 18 17 21 21 C 1.38813 * 119.99737 * 151.53273 * 19 18 17 22 22 N 1.31618 * 120.00390 * 344.36076 * 21 19 18 23 23 Si 1.86803 * 120.00226 * 164.35680 * 21 19 18 24 24 H 1.48500 * 109.47097 * 89.99901 * 23 21 19 25 25 H 1.48495 * 109.47328 * 210.00455 * 23 21 19 26 26 H 1.48509 * 109.46699 * 330.00312 * 23 21 19 27 27 C 1.46921 * 118.74154 * 306.31855 * 18 17 16 28 28 C 1.53035 * 109.46284 * 174.99746 * 15 14 13 29 29 H 1.08994 * 109.46988 * 300.00188 * 1 2 3 30 30 H 1.09002 * 109.46906 * 59.99946 * 1 2 3 31 31 H 1.08998 * 109.47182 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46946 * 240.00096 * 2 1 3 33 33 H 1.09007 * 109.46886 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47245 * 299.99846 * 3 2 1 35 35 H 1.08994 * 109.47315 * 60.00012 * 3 2 1 36 36 H 1.08001 * 119.60667 * 0.02562 * 6 5 4 37 37 H 1.07997 * 119.46016 * 179.97438 * 8 7 6 38 38 H 1.07998 * 120.46607 * 180.02562 * 9 8 7 39 39 H 0.97005 * 120.00152 * 359.97438 * 13 11 10 40 40 H 1.08995 * 109.47236 * 59.99767 * 14 13 11 41 41 H 1.09005 * 109.47199 * 300.00018 * 14 13 11 42 42 H 1.09008 * 109.46051 * 55.01947 * 15 14 13 43 43 H 1.08994 * 109.68421 * 58.70325 * 16 15 14 44 44 H 1.09004 * 109.46963 * 298.51131 * 16 15 14 45 45 H 1.08997 * 109.59096 * 294.71562 * 17 16 15 46 46 H 1.09008 * 109.58594 * 174.43651 * 17 16 15 47 47 H 0.97000 * 120.00565 * 179.97438 * 22 21 19 48 48 H 1.08997 * 109.59124 * 173.38871 * 27 18 17 49 49 H 1.08997 * 109.59076 * 293.68290 * 27 18 17 50 50 H 1.08996 * 109.49850 * 61.43688 * 28 15 14 51 51 H 1.09004 * 109.49960 * 301.33499 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2485 -1.2153 1.1013 6 6 4.0489 -1.0151 -0.0166 7 7 5.2525 -1.5433 -0.0869 8 6 5.7560 -2.2749 0.8884 9 6 5.0354 -2.5212 2.0387 10 6 3.7498 -1.9825 2.1642 11 6 2.9410 -2.2195 3.3789 12 8 1.8263 -1.7436 3.4692 13 7 3.4398 -2.9632 4.3861 14 6 2.6383 -3.1985 5.5896 15 6 3.4316 -4.0652 6.5695 16 6 3.6615 -5.4508 5.9538 17 6 4.4844 -6.3022 6.9256 18 7 3.8076 -6.3242 8.2295 19 6 3.5074 -7.5128 8.8398 20 1 3.3269 -8.3953 8.2440 21 6 3.4351 -7.5833 10.2242 22 7 3.9447 -6.6182 10.9599 23 14 2.6143 -9.0478 11.0434 24 1 3.6250 -10.1074 11.2903 25 1 2.0174 -8.6224 12.3348 26 1 1.5481 -9.5779 10.1559 27 6 3.4592 -5.0468 8.8663 28 6 2.6465 -4.2073 7.8754 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 3.6775 -0.4224 -0.8395 37 1 6.7486 -2.6878 0.7846 38 1 5.4574 -3.1212 2.8314 39 1 4.3294 -3.3433 4.3139 40 1 1.7151 -3.7097 5.3170 41 1 2.4000 -2.2443 6.0597 42 1 4.3937 -3.5951 6.7734 43 1 4.2012 -5.3492 5.0123 44 1 2.7003 -5.9319 5.7726 45 1 5.4790 -5.8707 7.0376 46 1 4.5684 -7.3184 6.5403 47 1 3.8939 -6.6672 11.9273 48 1 2.8644 -5.2343 9.7602 49 1 4.3702 -4.5139 9.1387 50 1 1.6950 -4.7000 7.6761 51 1 2.4638 -3.2199 8.2994 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001680228.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:34 Heat of formation + Delta-G solvation = -25.070118 kcal Electronic energy + Delta-G solvation = -30518.176087 eV Core-core repulsion = 26418.242185 eV Total energy + Delta-G solvation = -4099.933902 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.32233 -39.48115 -38.73728 -37.75510 -34.99930 -33.88186 -33.19624 -32.27947 -30.73707 -30.56190 -29.71711 -27.72969 -27.06940 -25.10477 -24.29350 -23.50165 -22.25776 -21.71742 -21.16302 -20.65918 -19.24851 -18.77793 -17.76298 -17.23293 -16.72902 -16.07830 -15.75922 -15.55604 -15.20421 -14.96582 -14.78744 -14.58522 -14.24683 -13.97421 -13.71343 -13.59220 -13.52126 -13.39290 -13.14271 -13.02253 -12.78059 -12.51807 -12.38488 -12.32822 -12.16884 -11.88627 -11.48768 -11.35293 -11.27841 -10.99203 -10.72076 -10.53254 -10.39214 -10.24791 -10.22503 -10.09947 -9.93682 -9.70456 -9.55685 -9.43578 -9.03309 -8.77916 -8.47687 -6.66756 -5.79299 -3.22593 0.39021 0.75225 2.66912 2.78895 3.03502 3.36831 3.44004 3.46365 3.52876 3.99829 4.19428 4.30299 4.37698 4.42632 4.49087 4.52651 4.60584 4.82155 5.01065 5.10195 5.11748 5.20462 5.25341 5.31711 5.36154 5.37344 5.39155 5.42629 5.49694 5.59466 5.70283 5.77845 5.84402 5.92444 6.03066 6.06485 6.12680 6.30674 6.39223 6.44577 6.59100 6.67790 6.74877 6.80022 6.90135 6.96555 7.36500 7.45614 7.49655 7.66632 7.78834 8.16018 8.45353 9.21332 9.84571 10.41146 11.29101 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021280 B = 0.001993 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.471472 B =14045.520208 C =14785.656362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.068 3.932 3 C -0.182 4.182 4 O -0.268 6.268 5 C 0.137 3.863 6 C 0.009 3.991 7 N -0.433 5.433 8 C 0.051 3.949 9 C -0.099 4.099 10 C -0.128 4.128 11 C 0.555 3.445 12 O -0.515 6.515 13 N -0.719 5.719 14 C 0.125 3.875 15 C -0.090 4.090 16 C -0.127 4.127 17 C 0.145 3.855 18 N -0.592 5.592 19 C -0.251 4.251 20 H 0.064 0.936 21 C 0.001 3.999 22 N -0.904 5.904 23 Si 0.902 3.098 24 H -0.287 1.287 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.171 3.829 28 C -0.133 4.133 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.165 0.835 37 H 0.165 0.835 38 H 0.147 0.853 39 H 0.398 0.602 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.046 0.954 44 H 0.060 0.940 45 H 0.016 0.984 46 H 0.052 0.948 47 H 0.254 0.746 48 H 0.089 0.911 49 H 0.018 0.982 50 H 0.058 0.942 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.264 14.375 -23.255 27.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.012 3.988 3 C -0.239 4.239 4 O -0.178 6.178 5 C 0.086 3.914 6 C -0.151 4.151 7 N -0.143 5.143 8 C -0.105 4.105 9 C -0.119 4.119 10 C -0.139 4.139 11 C 0.341 3.659 12 O -0.390 6.390 13 N -0.372 5.372 14 C 0.002 3.998 15 C -0.109 4.109 16 C -0.167 4.167 17 C 0.019 3.981 18 N -0.315 5.315 19 C -0.381 4.381 20 H 0.082 0.918 21 C -0.197 4.197 22 N -0.549 5.549 23 Si 0.732 3.268 24 H -0.214 1.214 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.045 3.955 28 C -0.172 4.172 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.182 0.818 37 H 0.182 0.818 38 H 0.165 0.835 39 H 0.234 0.766 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.065 0.935 44 H 0.079 0.921 45 H 0.034 0.966 46 H 0.071 0.929 47 H 0.064 0.936 48 H 0.107 0.893 49 H 0.036 0.964 50 H 0.076 0.924 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.769 14.863 -23.532 27.843 hybrid contribution -0.270 -0.997 1.020 1.452 sum -1.039 13.866 -22.512 26.460 Atomic orbital electron populations 1.21823 0.91787 1.03556 1.03217 1.22627 0.96319 0.92775 0.87078 1.22416 1.01974 0.95848 1.03676 1.86441 1.26871 1.66485 1.38008 1.20123 0.86132 0.91363 0.93773 1.23035 0.91307 1.03140 0.97579 1.67372 1.11865 1.05916 1.29164 1.22590 1.00785 0.97671 0.89462 1.22313 0.92563 0.97554 0.99471 1.19939 0.96034 1.02326 0.95628 1.17863 0.86208 0.79356 0.82487 1.90827 1.18962 1.49234 1.80026 1.45982 1.20256 1.52843 1.18125 1.21612 0.94479 0.99780 0.83919 1.21378 0.99000 0.95265 0.95277 1.22136 1.01204 0.95688 0.97638 1.20883 0.93068 0.97201 0.86989 1.44041 1.66509 1.02578 1.18396 1.19168 1.41280 0.88571 0.89071 0.91802 1.25061 1.00069 0.97822 0.96761 1.70009 1.46495 1.33833 1.04524 0.86304 0.79411 0.82248 0.78849 1.21415 1.21555 1.20502 1.20778 0.96031 0.84479 0.94172 1.22176 0.99739 0.99939 0.95380 0.91045 0.90407 0.91441 0.90829 0.91925 0.90618 0.90988 0.81830 0.81786 0.83549 0.76626 0.91438 0.91627 0.91278 0.93531 0.92131 0.96614 0.92913 0.93634 0.89294 0.96437 0.92368 0.93030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.56 37.16 0.36 -0.66 16 2 C 0.07 0.53 2.85 -26.73 -0.08 0.45 16 3 C -0.18 -1.14 9.17 37.15 0.34 -0.80 16 4 O -0.27 -3.20 8.04 -39.90 -0.32 -3.52 16 5 C 0.14 1.56 6.63 -38.53 -0.26 1.30 16 6 C 0.01 0.09 9.42 -17.38 -0.16 -0.08 16 7 N -0.43 -4.35 10.33 -13.17 -0.14 -4.49 16 8 C 0.05 0.43 11.16 -17.62 -0.20 0.23 16 9 C -0.10 -0.86 9.61 -39.04 -0.38 -1.24 16 10 C -0.13 -1.49 5.92 -104.53 -0.62 -2.11 16 11 C 0.56 7.79 7.79 -12.33 -0.10 7.69 16 12 O -0.51 -9.06 15.31 -15.86 -0.24 -9.30 16 13 N -0.72 -8.88 5.23 -61.26 -0.32 -9.20 16 14 C 0.12 1.76 5.06 -4.05 -0.02 1.74 16 15 C -0.09 -1.39 2.19 -90.42 -0.20 -1.59 16 16 C -0.13 -2.04 5.27 -26.45 -0.14 -2.17 16 17 C 0.15 2.89 6.50 -3.72 -0.02 2.87 16 18 N -0.59 -14.49 2.99 -172.32 -0.52 -15.01 16 19 C -0.25 -6.82 9.59 -15.06 -0.14 -6.96 16 20 H 0.06 1.71 7.88 -52.49 -0.41 1.29 16 21 C 0.00 0.03 4.95 -17.43 -0.09 -0.05 16 22 N -0.90 -25.99 11.13 55.49 0.62 -25.38 16 23 Si 0.90 21.58 29.58 -169.99 -5.03 16.55 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 C 0.17 3.97 5.29 -3.71 -0.02 3.95 16 28 C -0.13 -2.42 5.36 -26.61 -0.14 -2.56 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.45 6.36 -51.93 -0.33 0.12 16 33 H 0.06 0.40 6.89 -51.93 -0.36 0.04 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.16 1.16 5.45 -52.49 -0.29 0.87 16 37 H 0.16 0.91 8.06 -52.49 -0.42 0.48 16 38 H 0.15 0.89 6.53 -52.49 -0.34 0.55 16 39 H 0.40 3.94 5.79 -40.82 -0.24 3.70 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.07 1.05 8.14 -51.92 -0.42 0.62 16 43 H 0.05 0.60 7.16 -51.93 -0.37 0.23 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 46 H 0.05 1.04 7.93 -51.92 -0.41 0.63 16 47 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 48 H 0.09 2.34 6.04 -51.93 -0.31 2.02 16 49 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 50 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 51 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 402.50 15.07 6.07 6.07 Total: -1.00 -33.40 402.50 -9.86 -43.26 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -8.12 Total: 1.00 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -1.86 Total: 0.03 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: -0.35 Total: -54.07 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: -0.56 Total: -12.82 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.40 -9.86 -43.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001680228.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.191 kcal (2) G-P(sol) polarization free energy of solvation -33.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds