Wall clock time and date at job start Wed Apr 1 2020 05:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47178 * 2 1 4 4 O 1.42901 * 109.46921 * 119.99998 * 2 1 3 5 5 C 1.35671 * 116.99868 * 155.47117 * 4 2 1 6 6 C 1.38939 * 120.57911 * 5.29391 * 5 4 2 7 7 N 1.31631 * 120.79373 * 180.28750 * 6 5 4 8 8 C 1.31912 * 122.14555 * 359.71522 * 7 6 5 9 9 C 1.37959 * 121.07220 * 359.97438 * 8 7 6 10 10 C 1.39954 * 119.07196 * 0.02562 * 9 8 7 11 11 C 1.47842 * 120.96396 * 180.02562 * 10 9 8 12 12 O 1.21544 * 119.99936 * 180.02562 * 11 10 9 13 13 N 1.34773 * 119.99864 * 0.02562 * 11 10 9 14 14 C 1.46498 * 120.00120 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47603 * 180.02562 * 14 13 11 16 16 C 1.53359 * 109.41761 * 295.12707 * 15 14 13 17 17 C 1.53184 * 109.14858 * 178.67316 * 16 15 14 18 18 N 1.46923 * 108.89675 * 54.57576 * 17 16 15 19 19 C 1.36940 * 120.62967 * 126.33642 * 18 17 16 20 20 H 1.07996 * 120.00357 * 331.53654 * 19 18 17 21 21 C 1.38813 * 119.99737 * 151.53273 * 19 18 17 22 22 N 1.31618 * 120.00390 * 344.36076 * 21 19 18 23 23 Si 1.86803 * 120.00226 * 164.35680 * 21 19 18 24 24 H 1.48500 * 109.47097 * 89.99901 * 23 21 19 25 25 H 1.48495 * 109.47328 * 210.00455 * 23 21 19 26 26 H 1.48509 * 109.46699 * 330.00312 * 23 21 19 27 27 C 1.46921 * 118.74154 * 306.31855 * 18 17 16 28 28 C 1.53035 * 109.46284 * 174.99746 * 15 14 13 29 29 H 1.08994 * 109.46988 * 300.00188 * 1 2 3 30 30 H 1.09002 * 109.46906 * 59.99946 * 1 2 3 31 31 H 1.08998 * 109.47182 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46946 * 240.00096 * 2 1 3 33 33 H 1.09007 * 109.46886 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47245 * 299.99846 * 3 2 1 35 35 H 1.08994 * 109.47315 * 60.00012 * 3 2 1 36 36 H 1.08001 * 119.60667 * 0.02562 * 6 5 4 37 37 H 1.07997 * 119.46016 * 179.97438 * 8 7 6 38 38 H 1.07998 * 120.46607 * 180.02562 * 9 8 7 39 39 H 0.97005 * 120.00152 * 359.97438 * 13 11 10 40 40 H 1.08995 * 109.47236 * 59.99767 * 14 13 11 41 41 H 1.09005 * 109.47199 * 300.00018 * 14 13 11 42 42 H 1.09008 * 109.46051 * 55.01947 * 15 14 13 43 43 H 1.08994 * 109.68421 * 58.70325 * 16 15 14 44 44 H 1.09004 * 109.46963 * 298.51131 * 16 15 14 45 45 H 1.08997 * 109.59096 * 294.71562 * 17 16 15 46 46 H 1.09008 * 109.58594 * 174.43651 * 17 16 15 47 47 H 0.97000 * 120.00565 * 179.97438 * 22 21 19 48 48 H 1.08997 * 109.59124 * 173.38871 * 27 18 17 49 49 H 1.08997 * 109.59076 * 293.68290 * 27 18 17 50 50 H 1.08996 * 109.49850 * 61.43688 * 28 15 14 51 51 H 1.09004 * 109.49960 * 301.33499 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2485 -1.2153 1.1013 6 6 4.0489 -1.0151 -0.0166 7 7 5.2525 -1.5433 -0.0869 8 6 5.7560 -2.2749 0.8884 9 6 5.0354 -2.5212 2.0387 10 6 3.7498 -1.9825 2.1642 11 6 2.9410 -2.2195 3.3789 12 8 1.8263 -1.7436 3.4692 13 7 3.4398 -2.9632 4.3861 14 6 2.6383 -3.1985 5.5896 15 6 3.4316 -4.0652 6.5695 16 6 3.6615 -5.4508 5.9538 17 6 4.4844 -6.3022 6.9256 18 7 3.8076 -6.3242 8.2295 19 6 3.5074 -7.5128 8.8398 20 1 3.3269 -8.3953 8.2440 21 6 3.4351 -7.5833 10.2242 22 7 3.9447 -6.6182 10.9599 23 14 2.6143 -9.0478 11.0434 24 1 3.6250 -10.1074 11.2903 25 1 2.0174 -8.6224 12.3348 26 1 1.5481 -9.5779 10.1559 27 6 3.4592 -5.0468 8.8663 28 6 2.6465 -4.2073 7.8754 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 3.6775 -0.4224 -0.8395 37 1 6.7486 -2.6878 0.7846 38 1 5.4574 -3.1212 2.8314 39 1 4.3294 -3.3433 4.3139 40 1 1.7151 -3.7097 5.3170 41 1 2.4000 -2.2443 6.0597 42 1 4.3937 -3.5951 6.7734 43 1 4.2012 -5.3492 5.0123 44 1 2.7003 -5.9319 5.7726 45 1 5.4790 -5.8707 7.0376 46 1 4.5684 -7.3184 6.5403 47 1 3.8939 -6.6672 11.9273 48 1 2.8644 -5.2343 9.7602 49 1 4.3702 -4.5139 9.1387 50 1 1.6950 -4.7000 7.6761 51 1 2.4638 -3.2199 8.2994 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001680228.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:33 Heat of formation + Delta-G solvation = -45.389408 kcal Electronic energy + Delta-G solvation = -30519.057198 eV Core-core repulsion = 26418.242185 eV Total energy + Delta-G solvation = -4100.815012 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.08508 -40.53247 -39.47456 -39.22262 -36.43013 -34.68955 -34.45666 -33.35010 -32.33023 -31.37058 -31.25624 -28.57620 -28.22744 -26.31057 -25.41179 -24.54585 -23.78742 -22.66444 -22.38152 -21.64711 -20.73637 -19.66451 -18.75031 -18.44122 -18.02023 -16.89344 -16.81140 -16.64956 -16.48150 -16.15187 -15.67248 -15.63574 -15.29307 -15.21522 -15.10039 -14.86548 -14.68447 -14.59483 -14.08515 -14.01490 -13.83784 -13.61315 -13.42416 -13.37500 -13.01483 -12.99015 -12.81301 -12.75468 -12.55503 -12.26462 -12.04858 -12.01666 -11.86196 -11.83608 -11.62349 -11.42079 -11.15344 -11.08973 -10.86432 -10.53724 -10.46922 -10.11869 -9.50059 -8.64609 -7.86191 -5.31695 -0.39036 0.06572 1.45843 1.47842 1.56970 1.84249 2.00948 2.05860 2.51670 2.76377 3.28532 3.38199 3.49666 3.60300 3.68724 3.72646 3.82905 3.86368 3.93514 3.96383 4.07661 4.09176 4.14924 4.42772 4.51448 4.55246 4.62872 4.66969 4.69807 4.74777 4.77003 4.79474 4.82748 4.83681 4.87146 4.94676 5.03548 5.14075 5.19998 5.23386 5.28821 5.30042 5.35565 5.44488 5.45728 5.57172 5.67083 5.81027 6.22772 6.41548 6.48894 6.81594 7.15167 7.17226 7.89770 8.39970 9.19727 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021280 B = 0.001993 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.471472 B =14045.520208 C =14785.656362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.058 3.942 3 C -0.176 4.176 4 O -0.298 6.298 5 C 0.122 3.878 6 C 0.011 3.989 7 N -0.447 5.447 8 C 0.051 3.949 9 C -0.087 4.087 10 C -0.153 4.153 11 C 0.555 3.445 12 O -0.559 6.559 13 N -0.707 5.707 14 C 0.138 3.862 15 C -0.077 4.077 16 C -0.115 4.115 17 C 0.140 3.860 18 N -0.613 5.613 19 C -0.260 4.260 20 H 0.064 0.936 21 C -0.053 4.053 22 N -0.935 5.935 23 Si 0.964 3.036 24 H -0.284 1.284 25 H -0.293 1.293 26 H -0.272 1.272 27 C 0.177 3.823 28 C -0.122 4.122 29 H 0.055 0.945 30 H 0.107 0.893 31 H 0.055 0.945 32 H 0.091 0.909 33 H 0.060 0.940 34 H 0.101 0.899 35 H 0.056 0.944 36 H 0.184 0.816 37 H 0.197 0.803 38 H 0.175 0.825 39 H 0.413 0.587 40 H 0.056 0.944 41 H 0.062 0.938 42 H 0.080 0.920 43 H 0.087 0.913 44 H 0.048 0.952 45 H 0.021 0.979 46 H 0.051 0.949 47 H 0.249 0.751 48 H 0.051 0.949 49 H 0.000 1.000 50 H 0.049 0.951 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.769 14.546 -25.797 29.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.003 3.997 3 C -0.233 4.233 4 O -0.209 6.209 5 C 0.072 3.928 6 C -0.149 4.149 7 N -0.157 5.157 8 C -0.105 4.105 9 C -0.108 4.108 10 C -0.164 4.164 11 C 0.342 3.658 12 O -0.438 6.438 13 N -0.360 5.360 14 C 0.015 3.985 15 C -0.096 4.096 16 C -0.154 4.154 17 C 0.014 3.986 18 N -0.336 5.336 19 C -0.390 4.390 20 H 0.082 0.918 21 C -0.248 4.248 22 N -0.581 5.581 23 Si 0.793 3.207 24 H -0.211 1.211 25 H -0.220 1.220 26 H -0.197 1.197 27 C 0.051 3.949 28 C -0.162 4.162 29 H 0.074 0.926 30 H 0.125 0.875 31 H 0.074 0.926 32 H 0.109 0.891 33 H 0.079 0.921 34 H 0.120 0.880 35 H 0.075 0.925 36 H 0.201 0.799 37 H 0.214 0.786 38 H 0.192 0.808 39 H 0.251 0.749 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.098 0.902 43 H 0.105 0.895 44 H 0.067 0.933 45 H 0.039 0.961 46 H 0.070 0.930 47 H 0.058 0.942 48 H 0.069 0.931 49 H 0.018 0.982 50 H 0.067 0.933 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.294 15.025 -26.114 30.129 hybrid contribution -0.536 -1.046 1.753 2.111 sum -0.243 13.979 -24.361 28.088 Atomic orbital electron populations 1.21861 0.91532 1.02980 1.03873 1.22928 0.96620 0.93480 0.86647 1.22384 1.01816 0.94961 1.04188 1.86416 1.27379 1.67012 1.40086 1.20357 0.86356 0.91722 0.94407 1.23285 0.91004 1.03043 0.97523 1.67442 1.11970 1.06362 1.29922 1.23148 1.01829 0.96747 0.88746 1.22601 0.91127 0.96740 1.00292 1.19957 0.97243 1.04204 0.95006 1.18232 0.85837 0.78562 0.83141 1.90803 1.20980 1.51038 1.80965 1.45789 1.20622 1.52469 1.17166 1.21295 0.93969 0.99091 0.84189 1.21206 0.99086 0.95420 0.93915 1.21998 1.00382 0.94792 0.98196 1.21077 0.93606 0.98205 0.85682 1.44327 1.67410 1.02108 1.19798 1.19487 1.40484 0.89583 0.89476 0.91803 1.25788 1.01131 1.00436 0.97427 1.70159 1.48031 1.35649 1.04282 0.85325 0.78498 0.79332 0.77586 1.21069 1.21969 1.19744 1.20573 0.95209 0.84792 0.94288 1.21977 0.98737 0.99620 0.95861 0.92590 0.87494 0.92609 0.89077 0.92066 0.88048 0.92475 0.79907 0.78649 0.80753 0.74900 0.92537 0.91919 0.90169 0.89475 0.93280 0.96116 0.93027 0.94171 0.93053 0.98223 0.93254 0.91339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.56 71.98 0.69 -1.26 16 2 C 0.06 0.86 2.85 30.59 0.09 0.95 16 3 C -0.18 -2.01 9.17 71.98 0.66 -1.35 16 4 O -0.30 -7.14 8.04 -69.62 -0.56 -7.70 16 5 C 0.12 2.68 6.63 22.95 0.15 2.83 16 6 C 0.01 0.19 9.42 84.89 0.80 0.99 16 7 N -0.45 -7.84 10.33 -195.59 -2.02 -9.86 16 8 C 0.05 0.69 11.16 84.61 0.94 1.64 16 9 C -0.09 -1.26 9.61 22.62 0.22 -1.04 16 10 C -0.15 -3.34 5.92 -19.81 -0.12 -3.46 16 11 C 0.55 15.02 7.79 86.79 0.68 15.69 16 12 O -0.56 -19.86 15.31 16.41 0.25 -19.61 16 13 N -0.71 -15.86 5.23 -466.00 -2.44 -18.30 16 14 C 0.14 3.67 5.06 86.38 0.44 4.10 16 15 C -0.08 -2.23 2.19 -10.66 -0.02 -2.25 16 16 C -0.11 -3.39 5.27 30.78 0.16 -3.23 16 17 C 0.14 5.38 6.50 86.36 0.56 5.94 16 18 N -0.61 -30.12 2.99 -699.11 -2.09 -32.21 16 19 C -0.26 -14.23 9.59 84.03 0.81 -13.43 16 20 H 0.06 3.42 7.88 -2.91 -0.02 3.39 16 21 C -0.05 -2.94 4.95 84.86 0.42 -2.52 16 22 N -0.93 -55.22 11.13 21.65 0.24 -54.98 16 23 Si 0.96 45.01 29.58 68.60 2.03 47.04 16 24 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 25 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 26 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 27 C 0.18 8.37 5.29 86.37 0.46 8.83 16 28 C -0.12 -4.41 5.36 30.67 0.16 -4.25 16 29 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.09 0.97 6.36 -2.39 -0.02 0.96 16 33 H 0.06 0.71 6.89 -2.38 -0.02 0.69 16 34 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.18 2.22 5.45 -2.91 -0.02 2.20 16 37 H 0.20 1.30 8.06 -2.91 -0.02 1.28 16 38 H 0.18 1.36 6.53 -2.91 -0.02 1.34 16 39 H 0.41 6.66 5.79 -92.70 -0.54 6.12 16 40 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 42 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 43 H 0.09 1.90 7.16 -2.39 -0.02 1.88 16 44 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.05 1.97 7.93 -2.38 -0.02 1.95 16 47 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 48 H 0.05 2.80 6.04 -2.39 -0.01 2.79 16 49 H 0.00 -0.02 8.14 -2.39 -0.02 -0.03 16 50 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 51 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -75.37 402.50 2.90 -72.47 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 0.40 Total: 14.97 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: 7.09 Total: 8.17 kcal Atomic # 7 Polarization: -109.04 SS G_CDS: -6.31 Total: -115.35 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -0.31 Total: -27.31 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -75.37 2.90 -72.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001680228.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.080 kcal (2) G-P(sol) polarization free energy of solvation -75.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds