Wall clock time and date at job start Wed Apr 1 2020 05:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46954 * 2 1 4 4 O 1.42895 * 109.47187 * 240.00166 * 2 1 3 5 5 C 1.35670 * 116.99714 * 203.50601 * 4 2 1 6 6 C 1.38942 * 120.58105 * 3.99971 * 5 4 2 7 7 N 1.31625 * 120.79175 * 179.97438 * 6 5 4 8 8 C 1.31905 * 122.14830 * 0.02562 * 7 6 5 9 9 C 1.37962 * 121.07543 * 0.02562 * 8 7 6 10 10 C 1.39945 * 119.06966 * 359.70736 * 9 8 7 11 11 C 1.47840 * 120.96677 * 180.29268 * 10 9 8 12 12 O 1.21557 * 120.00339 * 128.86052 * 11 10 9 13 13 N 1.34779 * 119.99826 * 308.86298 * 11 10 9 14 14 C 1.46502 * 119.99965 * 354.98615 * 13 11 10 15 15 C 1.46501 * 120.00008 * 174.98699 * 13 11 10 16 16 C 1.53040 * 109.45918 * 240.02740 * 15 13 11 17 17 C 1.53193 * 109.31307 * 178.60055 * 16 15 13 18 18 N 1.46929 * 108.76154 * 54.65430 * 17 16 15 19 19 C 1.36938 * 120.62685 * 126.40707 * 18 17 16 20 20 H 1.08001 * 120.00272 * 323.22059 * 19 18 17 21 21 C 1.38820 * 119.99658 * 143.21905 * 19 18 17 22 22 N 1.31614 * 120.00317 * 358.95649 * 21 19 18 23 23 Si 1.86798 * 119.99628 * 178.95908 * 21 19 18 24 24 H 1.48502 * 109.47345 * 90.00137 * 23 21 19 25 25 H 1.48504 * 109.47230 * 209.99922 * 23 21 19 26 26 H 1.48502 * 109.47258 * 329.99555 * 23 21 19 27 27 C 1.46921 * 118.74209 * 306.38204 * 18 17 16 28 28 C 1.53044 * 109.45973 * 119.97277 * 15 13 11 29 29 H 1.08996 * 109.47172 * 60.00292 * 1 2 3 30 30 H 1.08999 * 109.47426 * 299.99939 * 1 2 3 31 31 H 1.08999 * 109.47374 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47172 * 119.99708 * 2 1 3 33 33 H 1.09002 * 109.47104 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47364 * 300.00162 * 3 2 1 35 35 H 1.08999 * 109.47005 * 59.99803 * 3 2 1 36 36 H 1.07999 * 119.59924 * 359.97438 * 6 5 4 37 37 H 1.08001 * 119.46272 * 180.02562 * 8 7 6 38 38 H 1.08000 * 120.46524 * 179.97438 * 9 8 7 39 39 H 1.08996 * 109.47357 * 94.51595 * 14 13 11 40 40 H 1.09005 * 109.46798 * 214.52057 * 14 13 11 41 41 H 1.09003 * 109.46863 * 334.51399 * 14 13 11 42 42 H 1.09004 * 109.46112 * 359.97438 * 15 13 11 43 43 H 1.09001 * 109.49330 * 298.56262 * 16 15 13 44 44 H 1.08999 * 109.49961 * 58.66179 * 16 15 13 45 45 H 1.09001 * 109.59972 * 294.86546 * 17 16 15 46 46 H 1.09001 * 109.69961 * 174.50343 * 17 16 15 47 47 H 0.96998 * 120.00299 * 180.02562 * 22 21 19 48 48 H 1.09006 * 109.58488 * 293.82386 * 27 18 17 49 49 H 1.08995 * 109.70407 * 173.47215 * 27 18 17 50 50 H 1.09001 * 109.49746 * 301.33361 * 28 15 13 51 51 H 1.08996 * 109.49508 * 61.40023 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 3.2568 -1.1967 -1.1085 6 6 3.9908 -1.1442 0.0700 7 7 5.2041 -1.6508 0.1313 8 6 5.7779 -2.2259 -0.9079 9 6 5.1245 -2.3224 -2.1192 10 6 3.8297 -1.8045 -2.2365 11 6 3.0885 -1.8909 -3.5127 12 8 1.9597 -2.3416 -3.5308 13 7 3.6645 -1.4701 -4.6563 14 6 4.9800 -0.8265 -4.6202 15 6 2.9749 -1.6562 -5.9354 16 6 3.8356 -2.5231 -6.8572 17 6 3.0963 -2.7446 -8.1804 18 7 2.7360 -1.4369 -8.7452 19 6 3.0924 -1.1079 -10.0258 20 1 4.0434 -1.4321 -10.4219 21 6 2.2313 -0.3576 -10.8148 22 7 1.0636 0.0201 -10.3392 23 14 2.7298 0.1159 -12.5517 24 1 2.2824 -0.9363 -13.4993 25 1 2.0964 1.4094 -12.9132 26 1 4.2069 0.2510 -12.6233 27 6 1.9857 -0.4892 -7.9100 28 6 2.7374 -0.2932 -6.5897 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 0.8900 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 3.5606 -0.6821 0.9463 37 1 6.7755 -2.6277 -0.8090 38 1 5.6038 -2.7949 -2.9638 39 1 5.7543 -1.5719 -4.8013 40 1 5.0292 -0.0568 -5.3905 41 1 5.1353 -0.3716 -3.6418 42 1 2.0178 -2.1487 -5.7637 43 1 4.7832 -2.0199 -7.0495 44 1 4.0241 -3.4851 -6.3805 45 1 2.1923 -3.3268 -8.0012 46 1 3.7424 -3.2783 -8.8775 47 1 0.4618 0.5440 -10.8907 48 1 0.9912 -0.8874 -7.7087 49 1 1.8988 0.4668 -8.4264 50 1 2.1441 0.3321 -5.9226 51 1 3.6955 0.1889 -6.7839 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005765474.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:37 Heat of formation + Delta-G solvation = -9.814142 kcal Electronic energy + Delta-G solvation = -31659.768843 eV Core-core repulsion = 27560.496490 eV Total energy + Delta-G solvation = -4099.272353 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.29288 -39.64451 -38.68309 -37.32574 -35.10636 -33.84584 -32.92897 -31.97803 -30.50936 -30.10620 -29.54529 -27.64493 -26.92952 -25.64665 -24.56077 -23.93780 -22.15084 -22.04976 -21.50101 -20.00194 -18.91293 -18.35958 -17.46611 -17.13707 -16.70648 -16.32834 -15.85161 -15.34822 -15.14347 -14.87709 -14.71885 -14.48063 -14.06560 -13.89376 -13.57879 -13.49609 -13.40281 -13.11461 -12.99512 -12.79771 -12.66891 -12.52885 -12.45335 -12.37456 -12.22980 -12.12946 -11.48229 -11.43579 -11.19252 -10.99835 -10.86877 -10.77009 -10.33660 -10.23981 -10.14432 -10.06106 -9.95631 -9.79634 -9.63365 -9.41356 -8.73300 -8.52408 -8.31054 -6.54283 -5.80071 -3.33920 0.60498 0.84091 2.70561 2.75463 3.06460 3.36291 3.42728 3.43661 3.48285 4.05867 4.22499 4.35196 4.45572 4.46996 4.50264 4.60698 4.67921 4.88950 5.10662 5.17303 5.18773 5.28125 5.32710 5.38538 5.39175 5.41425 5.44295 5.46439 5.56168 5.62788 5.68315 5.72600 5.77818 5.84984 5.88781 6.10292 6.15014 6.23167 6.36612 6.50054 6.58351 6.66335 6.80004 6.89172 6.96951 6.98962 7.38418 7.52540 7.57895 7.73364 7.78669 8.25640 8.51372 9.23344 9.81834 10.43553 11.27890 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016451 B = 0.002607 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.613124 B =10737.513357 C =11698.902519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.071 3.929 3 C -0.181 4.181 4 O -0.284 6.284 5 C 0.127 3.873 6 C 0.012 3.988 7 N -0.438 5.438 8 C 0.052 3.948 9 C -0.099 4.099 10 C -0.114 4.114 11 C 0.562 3.438 12 O -0.520 6.520 13 N -0.600 5.600 14 C 0.076 3.924 15 C 0.147 3.853 16 C -0.137 4.137 17 C 0.148 3.852 18 N -0.593 5.593 19 C -0.257 4.257 20 H 0.062 0.938 21 C 0.010 3.990 22 N -0.903 5.903 23 Si 0.904 3.096 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.279 1.279 27 C 0.176 3.824 28 C -0.146 4.146 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.164 0.836 37 H 0.163 0.837 38 H 0.147 0.853 39 H 0.056 0.944 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.095 0.905 43 H 0.060 0.940 44 H 0.051 0.949 45 H 0.020 0.980 46 H 0.057 0.943 47 H 0.255 0.745 48 H 0.020 0.980 49 H 0.092 0.908 50 H 0.050 0.950 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.079 0.188 22.864 23.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.015 3.985 3 C -0.238 4.238 4 O -0.195 6.195 5 C 0.077 3.923 6 C -0.147 4.147 7 N -0.148 5.148 8 C -0.104 4.104 9 C -0.120 4.120 10 C -0.126 4.126 11 C 0.348 3.652 12 O -0.396 6.396 13 N -0.333 5.333 14 C -0.067 4.067 15 C 0.045 3.955 16 C -0.178 4.178 17 C 0.021 3.979 18 N -0.316 5.316 19 C -0.387 4.387 20 H 0.080 0.920 21 C -0.189 4.189 22 N -0.546 5.546 23 Si 0.733 3.267 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.204 1.204 27 C 0.050 3.950 28 C -0.186 4.186 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.181 0.819 37 H 0.180 0.820 38 H 0.165 0.835 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.113 0.887 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.038 0.962 46 H 0.076 0.924 47 H 0.065 0.935 48 H 0.038 0.962 49 H 0.110 0.890 50 H 0.069 0.931 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.616 0.116 23.340 24.260 hybrid contribution -0.054 0.319 -1.456 1.492 sum 6.562 0.435 21.883 22.850 Atomic orbital electron populations 1.21841 0.91740 1.03654 1.03320 1.22604 0.96262 0.92598 0.86987 1.22393 1.01938 0.95770 1.03714 1.86303 1.26365 1.67494 1.39340 1.20033 0.85797 0.92764 0.93674 1.22946 0.91998 1.03274 0.96484 1.67358 1.09776 1.06261 1.31386 1.22553 1.00716 0.98989 0.88156 1.22266 0.92225 0.97482 0.99987 1.19831 0.95271 1.03514 0.94007 1.17944 0.85712 0.78597 0.82907 1.90803 1.17555 1.45352 1.85896 1.48061 1.19775 1.58536 1.06888 1.21827 0.84124 0.98051 1.02740 1.21235 0.96357 0.97768 0.80130 1.22376 0.99546 0.98169 0.97665 1.20887 0.96235 0.89046 0.91741 1.43991 1.65470 1.10476 1.11617 1.19115 0.99136 1.32026 0.88412 0.92003 1.25360 0.94984 1.00809 0.97758 1.69921 1.08714 1.39885 1.36080 0.86285 0.77926 0.77577 0.84889 1.21246 1.21634 1.20421 1.20782 0.91367 0.96321 0.86562 1.22590 1.01382 0.94857 0.99791 0.91034 0.90303 0.91326 0.90707 0.92006 0.90984 0.90572 0.81923 0.81956 0.83481 0.92538 0.90347 0.91675 0.88665 0.92077 0.93037 0.96240 0.92432 0.93473 0.96214 0.89009 0.93132 0.92486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.56 37.16 0.36 -0.83 16 2 C 0.07 0.63 2.87 -26.73 -0.08 0.55 16 3 C -0.18 -1.34 9.29 37.16 0.35 -0.99 16 4 O -0.28 -3.74 9.07 -21.58 -0.20 -3.93 16 5 C 0.13 1.60 6.56 -38.53 -0.25 1.35 16 6 C 0.01 0.13 9.59 -17.38 -0.17 -0.04 16 7 N -0.44 -4.70 10.32 -13.17 -0.14 -4.84 16 8 C 0.05 0.48 11.16 -17.62 -0.20 0.28 16 9 C -0.10 -1.00 8.13 -39.04 -0.32 -1.32 16 10 C -0.11 -1.52 4.62 -104.53 -0.48 -2.00 16 11 C 0.56 9.27 6.95 -12.33 -0.09 9.18 16 12 O -0.52 -10.64 16.07 2.45 0.04 -10.60 16 13 N -0.60 -9.22 2.76 -174.99 -0.48 -9.70 16 14 C 0.08 0.89 8.32 59.85 0.50 1.38 16 15 C 0.15 2.66 2.48 -67.89 -0.17 2.49 16 16 C -0.14 -2.40 5.34 -26.61 -0.14 -2.55 16 17 C 0.15 3.12 6.52 -3.71 -0.02 3.10 16 18 N -0.59 -14.79 2.98 -172.32 -0.51 -15.30 16 19 C -0.26 -6.97 9.54 -15.06 -0.14 -7.11 16 20 H 0.06 1.64 7.83 -52.49 -0.41 1.23 16 21 C 0.01 0.28 5.22 -17.43 -0.09 0.19 16 22 N -0.90 -26.04 10.95 55.49 0.61 -25.43 16 23 Si 0.90 21.44 29.55 -169.99 -5.02 16.42 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 C 0.18 4.24 5.21 -3.71 -0.02 4.22 16 28 C -0.15 -2.86 5.30 -26.61 -0.14 -3.00 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.52 5.97 -51.93 -0.31 0.21 16 33 H 0.06 0.47 7.44 -51.93 -0.39 0.08 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.16 1.28 5.76 -52.49 -0.30 0.98 16 37 H 0.16 0.99 8.06 -52.49 -0.42 0.56 16 38 H 0.15 1.20 7.26 -52.49 -0.38 0.82 16 39 H 0.06 0.55 7.69 -51.93 -0.40 0.15 16 40 H 0.08 0.96 6.48 -51.93 -0.34 0.62 16 41 H 0.06 0.68 6.31 -51.93 -0.33 0.35 16 42 H 0.10 1.98 6.91 -51.93 -0.36 1.62 16 43 H 0.06 1.04 7.72 -51.93 -0.40 0.64 16 44 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 47 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 48 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.09 2.46 6.22 -51.93 -0.32 2.14 16 50 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 51 H 0.06 1.08 6.75 -51.93 -0.35 0.73 16 LS Contribution 399.59 15.07 6.02 6.02 Total: -1.00 -33.33 399.59 -8.85 -42.19 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -8.06 Total: 0.28 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: -1.11 Total: 4.91 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: -0.52 Total: -55.28 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: -0.16 Total: -14.53 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.33 -8.85 -42.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005765474.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.371 kcal (2) G-P(sol) polarization free energy of solvation -33.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds