Wall clock time and date at job start Wed Apr 1 2020 05:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46954 * 2 1 4 4 O 1.42895 * 109.47187 * 240.00166 * 2 1 3 5 5 C 1.35670 * 116.99714 * 203.50601 * 4 2 1 6 6 C 1.38942 * 120.58105 * 3.99971 * 5 4 2 7 7 N 1.31625 * 120.79175 * 179.97438 * 6 5 4 8 8 C 1.31905 * 122.14830 * 0.02562 * 7 6 5 9 9 C 1.37962 * 121.07543 * 0.02562 * 8 7 6 10 10 C 1.39945 * 119.06966 * 359.70736 * 9 8 7 11 11 C 1.47840 * 120.96677 * 180.29268 * 10 9 8 12 12 O 1.21557 * 120.00339 * 128.86052 * 11 10 9 13 13 N 1.34779 * 119.99826 * 308.86298 * 11 10 9 14 14 C 1.46502 * 119.99965 * 354.98615 * 13 11 10 15 15 C 1.46501 * 120.00008 * 174.98699 * 13 11 10 16 16 C 1.53040 * 109.45918 * 240.02740 * 15 13 11 17 17 C 1.53193 * 109.31307 * 178.60055 * 16 15 13 18 18 N 1.46929 * 108.76154 * 54.65430 * 17 16 15 19 19 C 1.36938 * 120.62685 * 126.40707 * 18 17 16 20 20 H 1.08001 * 120.00272 * 323.22059 * 19 18 17 21 21 C 1.38820 * 119.99658 * 143.21905 * 19 18 17 22 22 N 1.31614 * 120.00317 * 358.95649 * 21 19 18 23 23 Si 1.86798 * 119.99628 * 178.95908 * 21 19 18 24 24 H 1.48502 * 109.47345 * 90.00137 * 23 21 19 25 25 H 1.48504 * 109.47230 * 209.99922 * 23 21 19 26 26 H 1.48502 * 109.47258 * 329.99555 * 23 21 19 27 27 C 1.46921 * 118.74209 * 306.38204 * 18 17 16 28 28 C 1.53044 * 109.45973 * 119.97277 * 15 13 11 29 29 H 1.08996 * 109.47172 * 60.00292 * 1 2 3 30 30 H 1.08999 * 109.47426 * 299.99939 * 1 2 3 31 31 H 1.08999 * 109.47374 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47172 * 119.99708 * 2 1 3 33 33 H 1.09002 * 109.47104 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47364 * 300.00162 * 3 2 1 35 35 H 1.08999 * 109.47005 * 59.99803 * 3 2 1 36 36 H 1.07999 * 119.59924 * 359.97438 * 6 5 4 37 37 H 1.08001 * 119.46272 * 180.02562 * 8 7 6 38 38 H 1.08000 * 120.46524 * 179.97438 * 9 8 7 39 39 H 1.08996 * 109.47357 * 94.51595 * 14 13 11 40 40 H 1.09005 * 109.46798 * 214.52057 * 14 13 11 41 41 H 1.09003 * 109.46863 * 334.51399 * 14 13 11 42 42 H 1.09004 * 109.46112 * 359.97438 * 15 13 11 43 43 H 1.09001 * 109.49330 * 298.56262 * 16 15 13 44 44 H 1.08999 * 109.49961 * 58.66179 * 16 15 13 45 45 H 1.09001 * 109.59972 * 294.86546 * 17 16 15 46 46 H 1.09001 * 109.69961 * 174.50343 * 17 16 15 47 47 H 0.96998 * 120.00299 * 180.02562 * 22 21 19 48 48 H 1.09006 * 109.58488 * 293.82386 * 27 18 17 49 49 H 1.08995 * 109.70407 * 173.47215 * 27 18 17 50 50 H 1.09001 * 109.49746 * 301.33361 * 28 15 13 51 51 H 1.08996 * 109.49508 * 61.40023 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 3.2568 -1.1967 -1.1085 6 6 3.9908 -1.1442 0.0700 7 7 5.2041 -1.6508 0.1313 8 6 5.7779 -2.2259 -0.9079 9 6 5.1245 -2.3224 -2.1192 10 6 3.8297 -1.8045 -2.2365 11 6 3.0885 -1.8909 -3.5127 12 8 1.9597 -2.3416 -3.5308 13 7 3.6645 -1.4701 -4.6563 14 6 4.9800 -0.8265 -4.6202 15 6 2.9749 -1.6562 -5.9354 16 6 3.8356 -2.5231 -6.8572 17 6 3.0963 -2.7446 -8.1804 18 7 2.7360 -1.4369 -8.7452 19 6 3.0924 -1.1079 -10.0258 20 1 4.0434 -1.4321 -10.4219 21 6 2.2313 -0.3576 -10.8148 22 7 1.0636 0.0201 -10.3392 23 14 2.7298 0.1159 -12.5517 24 1 2.2824 -0.9363 -13.4993 25 1 2.0964 1.4094 -12.9132 26 1 4.2069 0.2510 -12.6233 27 6 1.9857 -0.4892 -7.9100 28 6 2.7374 -0.2932 -6.5897 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 0.8900 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 3.5606 -0.6821 0.9463 37 1 6.7755 -2.6277 -0.8090 38 1 5.6038 -2.7949 -2.9638 39 1 5.7543 -1.5719 -4.8013 40 1 5.0292 -0.0568 -5.3905 41 1 5.1353 -0.3716 -3.6418 42 1 2.0178 -2.1487 -5.7637 43 1 4.7832 -2.0199 -7.0495 44 1 4.0241 -3.4851 -6.3805 45 1 2.1923 -3.3268 -8.0012 46 1 3.7424 -3.2783 -8.8775 47 1 0.4618 0.5440 -10.8907 48 1 0.9912 -0.8874 -7.7087 49 1 1.8988 0.4668 -8.4264 50 1 2.1441 0.3321 -5.9226 51 1 3.6955 0.1889 -6.7839 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001005765474.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:36 Heat of formation + Delta-G solvation = -30.434060 kcal Electronic energy + Delta-G solvation = -31660.662990 eV Core-core repulsion = 27560.496490 eV Total energy + Delta-G solvation = -4100.166500 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.19439 -40.85740 -39.50556 -38.92802 -36.61753 -34.73560 -34.29910 -33.23814 -31.82180 -31.37476 -31.19459 -28.26393 -28.03470 -27.24068 -25.74013 -24.89549 -23.87121 -23.53865 -22.26219 -21.29412 -20.46450 -19.24672 -18.78625 -18.39388 -17.99361 -17.52086 -16.90900 -16.65911 -16.27889 -16.14421 -15.67475 -15.51766 -15.37571 -15.30231 -14.87961 -14.83510 -14.60972 -14.27932 -14.13932 -14.12526 -13.95850 -13.57790 -13.39422 -13.29613 -13.19365 -13.01612 -12.88381 -12.84188 -12.74101 -12.52800 -12.10255 -12.09371 -11.97839 -11.93091 -11.86270 -11.53628 -11.40774 -11.26150 -10.77780 -10.58035 -10.44724 -9.68549 -9.51237 -8.58233 -7.88298 -5.46314 -0.26234 0.06275 1.47767 1.48677 1.53897 1.57980 1.87269 2.00890 2.49756 2.67167 3.25628 3.30041 3.38384 3.59573 3.65955 3.71158 3.83687 3.85755 3.93023 4.03402 4.05757 4.13684 4.18290 4.30437 4.43053 4.45019 4.57916 4.62560 4.64128 4.66576 4.68984 4.75257 4.77583 4.80701 4.83663 4.90357 4.91096 5.01990 5.05097 5.13331 5.17443 5.20409 5.29806 5.44576 5.45247 5.53775 5.64538 5.69790 6.18064 6.32577 6.43666 6.82122 7.01568 7.15649 7.81138 8.38860 9.18051 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016451 B = 0.002607 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.613124 B =10737.513357 C =11698.902519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.062 3.938 3 C -0.175 4.175 4 O -0.318 6.318 5 C 0.112 3.888 6 C 0.018 3.982 7 N -0.448 5.448 8 C 0.059 3.941 9 C -0.089 4.089 10 C -0.139 4.139 11 C 0.560 3.440 12 O -0.573 6.573 13 N -0.597 5.597 14 C 0.071 3.929 15 C 0.156 3.844 16 C -0.119 4.119 17 C 0.144 3.856 18 N -0.609 5.609 19 C -0.266 4.266 20 H 0.070 0.930 21 C -0.046 4.046 22 N -0.937 5.937 23 Si 0.972 3.028 24 H -0.285 1.285 25 H -0.295 1.295 26 H -0.264 1.264 27 C 0.186 3.814 28 C -0.128 4.128 29 H 0.052 0.948 30 H 0.110 0.890 31 H 0.056 0.944 32 H 0.096 0.904 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.102 0.898 36 H 0.186 0.814 37 H 0.200 0.800 38 H 0.170 0.830 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.062 0.938 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.005 0.995 46 H 0.067 0.933 47 H 0.250 0.750 48 H -0.014 1.014 49 H 0.061 0.939 50 H 0.048 0.952 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.578 0.006 24.617 26.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.007 3.993 3 C -0.232 4.232 4 O -0.230 6.230 5 C 0.062 3.938 6 C -0.141 4.141 7 N -0.158 5.158 8 C -0.096 4.096 9 C -0.109 4.109 10 C -0.150 4.150 11 C 0.349 3.651 12 O -0.453 6.453 13 N -0.328 5.328 14 C -0.071 4.071 15 C 0.053 3.947 16 C -0.159 4.159 17 C 0.018 3.982 18 N -0.333 5.333 19 C -0.396 4.396 20 H 0.088 0.912 21 C -0.242 4.242 22 N -0.582 5.582 23 Si 0.799 3.201 24 H -0.212 1.212 25 H -0.221 1.221 26 H -0.189 1.189 27 C 0.059 3.941 28 C -0.168 4.168 29 H 0.071 0.929 30 H 0.128 0.872 31 H 0.075 0.925 32 H 0.114 0.886 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.121 0.879 36 H 0.202 0.798 37 H 0.216 0.784 38 H 0.187 0.813 39 H 0.105 0.895 40 H 0.093 0.907 41 H 0.099 0.901 42 H 0.080 0.920 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.023 0.977 46 H 0.085 0.915 47 H 0.060 0.940 48 H 0.004 0.996 49 H 0.079 0.921 50 H 0.067 0.933 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.173 -0.067 25.117 27.099 hybrid contribution -1.152 0.344 -1.938 2.281 sum 9.021 0.276 23.179 24.874 Atomic orbital electron populations 1.21890 0.91653 1.03050 1.03913 1.22918 0.96448 0.93317 0.86601 1.22359 1.01855 0.94860 1.04122 1.86280 1.27020 1.68113 1.41594 1.20254 0.85935 0.93299 0.94273 1.23218 0.91755 1.02802 0.96319 1.67455 1.09762 1.06500 1.32062 1.23138 1.01764 0.97590 0.87141 1.22506 0.90716 0.96441 1.01236 1.19758 0.96691 1.06026 0.92562 1.18483 0.85210 0.77397 0.84044 1.90770 1.20043 1.47740 1.86737 1.47985 1.20857 1.58426 1.05488 1.22100 0.82591 0.98709 1.03659 1.20832 0.95745 0.96380 0.81751 1.22161 0.99090 0.99359 0.95283 1.21027 0.96218 0.87244 0.93750 1.44226 1.65462 1.12034 1.11550 1.19492 0.99396 1.31464 0.89234 0.91211 1.26159 0.95067 1.01342 1.01609 1.70119 1.09942 1.40909 1.37278 0.85214 0.78189 0.76699 0.79963 1.21204 1.22115 1.18855 1.20473 0.90675 0.94530 0.88391 1.22307 1.01108 0.96116 0.97290 0.92908 0.87180 0.92518 0.88585 0.92003 0.92780 0.87903 0.79780 0.78370 0.81267 0.89473 0.90712 0.90099 0.92008 0.90465 0.90650 0.97704 0.91459 0.94038 0.99615 0.92097 0.93342 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.56 71.98 0.69 -1.68 16 2 C 0.06 1.05 2.87 30.59 0.09 1.14 16 3 C -0.17 -2.39 9.29 71.98 0.67 -1.72 16 4 O -0.32 -8.53 9.07 -87.12 -0.79 -9.32 16 5 C 0.11 2.72 6.56 22.95 0.15 2.88 16 6 C 0.02 0.34 9.59 84.89 0.81 1.15 16 7 N -0.45 -8.18 10.32 -195.59 -2.02 -10.20 16 8 C 0.06 0.86 11.16 84.62 0.94 1.80 16 9 C -0.09 -1.51 8.13 22.62 0.18 -1.32 16 10 C -0.14 -3.51 4.62 -19.81 -0.09 -3.60 16 11 C 0.56 18.50 6.95 86.78 0.60 19.11 16 12 O -0.57 -24.55 16.07 -1.15 -0.02 -24.57 16 13 N -0.60 -17.75 2.76 -825.83 -2.28 -20.03 16 14 C 0.07 1.45 8.32 127.77 1.06 2.52 16 15 C 0.16 5.68 2.48 45.02 0.11 5.80 16 16 C -0.12 -3.98 5.34 30.67 0.16 -3.82 16 17 C 0.14 6.05 6.52 86.36 0.56 6.61 16 18 N -0.61 -30.98 2.98 -699.08 -2.08 -33.06 16 19 C -0.27 -14.49 9.54 84.04 0.80 -13.69 16 20 H 0.07 3.64 7.83 -2.91 -0.02 3.62 16 21 C -0.05 -2.58 5.22 84.86 0.44 -2.13 16 22 N -0.94 -56.15 10.95 21.65 0.24 -55.92 16 23 Si 0.97 44.50 29.55 68.60 2.03 46.53 16 24 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 25 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 26 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 27 C 0.19 9.40 5.21 86.36 0.45 9.85 16 28 C -0.13 -5.13 5.30 30.67 0.16 -4.96 16 29 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.10 1.17 5.97 -2.39 -0.01 1.15 16 33 H 0.06 0.84 7.44 -2.39 -0.02 0.82 16 34 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.19 2.42 5.76 -2.91 -0.02 2.41 16 37 H 0.20 1.36 8.06 -2.91 -0.02 1.34 16 38 H 0.17 2.02 7.26 -2.91 -0.02 2.00 16 39 H 0.09 1.29 7.69 -2.39 -0.02 1.28 16 40 H 0.07 1.62 6.48 -2.38 -0.02 1.60 16 41 H 0.08 1.44 6.31 -2.39 -0.02 1.42 16 42 H 0.06 2.70 6.91 -2.39 -0.02 2.68 16 43 H 0.08 2.38 7.72 -2.39 -0.02 2.36 16 44 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 45 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 46 H 0.07 2.67 7.93 -2.39 -0.02 2.65 16 47 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 48 H -0.01 -0.80 8.14 -2.38 -0.02 -0.82 16 49 H 0.06 3.44 6.22 -2.39 -0.01 3.43 16 50 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 51 H 0.07 2.63 6.75 -2.39 -0.02 2.61 16 Total: -1.00 -76.91 399.59 3.81 -73.10 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.93 Total: 15.55 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: 7.81 Total: 17.92 kcal Atomic # 7 Polarization: -113.06 SS G_CDS: -6.14 Total: -119.21 kcal Atomic # 8 Polarization: -33.08 SS G_CDS: -0.81 Total: -33.89 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -76.91 3.81 -73.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005765474.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.667 kcal (2) G-P(sol) polarization free energy of solvation -76.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds