Wall clock time and date at job start Wed Apr 1 2020 04:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47047 * 2 1 4 4 O 1.42894 * 109.47485 * 239.99700 * 2 1 3 5 5 C 1.35717 * 117.00315 * 205.91950 * 4 2 1 6 6 C 1.39227 * 120.38217 * 1.35508 * 5 4 2 7 7 C 1.38322 * 118.44838 * 179.97438 * 6 5 4 8 8 C 1.39465 * 119.13174 * 0.02562 * 7 6 5 9 9 C 1.47930 * 119.65628 * 180.02562 * 8 7 6 10 10 O 1.21538 * 120.00034 * 352.94730 * 9 8 7 11 11 N 1.34779 * 119.99890 * 172.95782 * 9 8 7 12 12 C 1.46509 * 119.99905 * 354.65520 * 11 9 8 13 13 C 1.46497 * 120.00027 * 174.66168 * 11 9 8 14 14 C 1.53040 * 109.45867 * 240.02468 * 13 11 9 15 15 C 1.53194 * 109.31161 * 178.60064 * 14 13 11 16 16 N 1.46929 * 108.76566 * 54.65303 * 15 14 13 17 17 C 1.36934 * 120.62870 * 126.40364 * 16 15 14 18 18 H 1.07997 * 120.00547 * 329.62666 * 17 16 15 19 19 C 1.38817 * 120.00018 * 149.62373 * 17 16 15 20 20 N 1.31620 * 120.00135 * 168.03426 * 19 17 16 21 21 Si 1.86802 * 119.99914 * 348.03859 * 19 17 16 22 22 H 1.48497 * 109.47250 * 92.85297 * 21 19 17 23 23 H 1.48498 * 109.47138 * 212.85965 * 21 19 17 24 24 H 1.48505 * 109.46734 * 332.85648 * 21 19 17 25 25 C 1.46924 * 118.73872 * 306.38555 * 16 15 14 26 26 C 1.53036 * 109.46133 * 119.96707 * 13 11 9 27 27 N 1.32800 * 120.68666 * 359.97104 * 8 7 6 28 28 C 1.31378 * 121.69159 * 359.77912 * 27 8 7 29 29 H 1.09008 * 109.47019 * 60.00783 * 1 2 3 30 30 H 1.09004 * 109.46898 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47671 * 300.00538 * 1 2 3 32 32 H 1.09002 * 109.47273 * 119.99579 * 2 1 3 33 33 H 1.09002 * 109.46740 * 299.99905 * 3 2 1 34 34 H 1.08994 * 109.47325 * 59.99249 * 3 2 1 35 35 H 1.09000 * 109.47265 * 180.02562 * 3 2 1 36 36 H 1.08003 * 120.77768 * 359.96094 * 6 5 4 37 37 H 1.08008 * 120.43430 * 179.97438 * 7 6 5 38 38 H 1.08997 * 109.46517 * 85.00763 * 12 11 9 39 39 H 1.08994 * 109.46808 * 205.00918 * 12 11 9 40 40 H 1.08994 * 109.46650 * 325.00874 * 12 11 9 41 41 H 1.09001 * 109.45864 * 359.97438 * 13 11 9 42 42 H 1.09010 * 109.49600 * 298.56359 * 14 13 11 43 43 H 1.09000 * 109.50085 * 58.66263 * 14 13 11 44 44 H 1.08998 * 109.59680 * 294.86837 * 15 14 13 45 45 H 1.09003 * 109.70150 * 174.50476 * 15 14 13 46 46 H 0.97001 * 120.00078 * 180.02562 * 20 19 17 47 47 H 1.08996 * 109.58523 * 293.81994 * 25 16 15 48 48 H 1.08996 * 109.69988 * 173.46442 * 25 16 15 49 49 H 1.08997 * 109.50047 * 301.33885 * 26 13 11 50 50 H 1.09002 * 109.49876 * 61.43317 * 26 13 11 51 51 H 1.08000 * 119.59655 * 180.24083 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 3.2372 -1.2406 -1.0915 6 6 3.9697 -1.1792 0.0909 7 6 5.2195 -1.7709 0.1233 8 6 5.7006 -2.4044 -1.0223 9 6 7.0355 -3.0415 -1.0005 10 8 7.7595 -2.9025 -0.0342 11 7 7.4489 -3.7761 -2.0522 12 6 6.5340 -4.0412 -3.1653 13 6 8.8130 -4.3095 -2.0822 14 6 9.5494 -3.7576 -3.3050 15 6 10.9859 -4.2896 -3.3140 16 7 10.9470 -5.7568 -3.2446 17 6 11.6051 -6.5168 -4.1743 18 1 11.7320 -6.1481 -5.1814 19 6 12.1091 -7.7615 -3.8224 20 7 12.5285 -8.5895 -4.7555 21 14 12.1919 -8.2612 -2.0243 22 1 10.9574 -9.0011 -1.6588 23 1 13.3743 -9.1328 -1.8068 24 1 12.3099 -7.0466 -1.1780 25 6 10.1890 -6.3928 -2.1586 26 6 8.7615 -5.8368 -2.1623 27 7 4.9724 -2.4425 -2.1322 28 6 3.7799 -1.8946 -2.1944 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 1.6765 1.9564 0.8899 35 1 3.1300 1.4426 -0.0005 36 1 3.5714 -0.6810 0.9625 37 1 5.8154 -1.7421 1.0237 38 1 6.5658 -3.2084 -3.8679 39 1 6.8358 -4.9570 -3.6734 40 1 5.5198 -4.1552 -2.7827 41 1 9.3397 -4.0106 -1.1759 42 1 9.0372 -4.0767 -4.2128 43 1 9.5653 -2.6686 -3.2593 44 1 11.5265 -3.8973 -2.4527 45 1 11.4866 -3.9803 -4.2315 46 1 12.8803 -9.4594 -4.5096 47 1 10.6646 -6.1720 -1.2030 48 1 10.1615 -7.4715 -2.3124 49 1 8.2165 -6.2281 -1.3032 50 1 8.2569 -6.1362 -3.0809 51 1 3.2152 -1.9490 -3.1134 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006487926.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:59 Heat of formation + Delta-G solvation = 8.105594 kcal Electronic energy + Delta-G solvation = -30815.258934 eV Core-core repulsion = 26716.763639 eV Total energy + Delta-G solvation = -4098.495295 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.34516 -40.04036 -38.69708 -37.52453 -35.28793 -33.93761 -32.82816 -32.30731 -30.97366 -30.39749 -29.92270 -27.91524 -26.80757 -25.57909 -24.63416 -23.83859 -22.84445 -22.20675 -21.54798 -20.11028 -19.12954 -18.80532 -17.60621 -17.15355 -16.69151 -16.21333 -16.14502 -15.48974 -15.41299 -14.98636 -14.91051 -14.58354 -14.16807 -13.94118 -13.80965 -13.73204 -13.60110 -13.16176 -13.02808 -12.97849 -12.88324 -12.80453 -12.75218 -12.51445 -12.25983 -11.94721 -11.87239 -11.74735 -11.61296 -11.27015 -10.91327 -10.81979 -10.48190 -10.29082 -10.19689 -10.09394 -9.92244 -9.77845 -9.43342 -9.40208 -8.85991 -8.65045 -8.34173 -6.90669 -5.89575 -3.32291 0.42833 0.77948 2.48614 2.63994 3.05260 3.34796 3.51475 3.53170 3.59492 3.94668 4.03279 4.19553 4.22227 4.32111 4.48151 4.55305 4.58883 4.72089 4.92877 5.00690 5.03616 5.09406 5.13746 5.22515 5.33673 5.37391 5.43362 5.44850 5.50182 5.52021 5.57413 5.59543 5.73545 5.79106 5.85850 5.91047 6.08070 6.12849 6.18542 6.25780 6.37869 6.46362 6.59790 6.65955 6.70179 6.71773 6.82531 6.94754 7.38377 7.55661 8.02572 8.20833 8.37394 8.96880 9.74873 10.13344 11.26400 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.031132 B = 0.002025 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.183758 B =13821.928511 C =13979.599556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.072 3.928 3 C -0.180 4.180 4 O -0.300 6.300 5 C 0.104 3.896 6 C -0.180 4.180 7 C -0.066 4.066 8 C 0.040 3.960 9 C 0.568 3.432 10 O -0.543 6.543 11 N -0.587 5.587 12 C 0.087 3.913 13 C 0.144 3.856 14 C -0.139 4.139 15 C 0.153 3.847 16 N -0.608 5.608 17 C -0.258 4.258 18 H 0.086 0.914 19 C 0.021 3.979 20 N -0.916 5.916 21 Si 0.891 3.109 22 H -0.290 1.290 23 H -0.305 1.305 24 H -0.265 1.265 25 C 0.126 3.874 26 C -0.140 4.140 27 N -0.407 5.407 28 C 0.068 3.932 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.146 0.854 37 H 0.150 0.850 38 H 0.058 0.942 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.067 0.933 43 H 0.056 0.944 44 H 0.025 0.975 45 H 0.067 0.933 46 H 0.262 0.738 47 H 0.032 0.968 48 H 0.073 0.927 49 H 0.056 0.944 50 H 0.069 0.931 51 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.941 19.187 9.887 33.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.016 3.984 3 C -0.238 4.238 4 O -0.212 6.212 5 C 0.055 3.945 6 C -0.206 4.206 7 C -0.087 4.087 8 C -0.098 4.098 9 C 0.355 3.645 10 O -0.421 6.421 11 N -0.317 5.317 12 C -0.055 4.055 13 C 0.042 3.958 14 C -0.179 4.179 15 C 0.026 3.974 16 N -0.332 5.332 17 C -0.386 4.386 18 H 0.104 0.896 19 C -0.177 4.177 20 N -0.559 5.559 21 Si 0.723 3.277 22 H -0.218 1.218 23 H -0.234 1.234 24 H -0.190 1.190 25 C 0.000 4.000 26 C -0.180 4.180 27 N -0.120 5.120 28 C -0.094 4.094 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.164 0.836 37 H 0.168 0.832 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.104 0.896 41 H 0.114 0.886 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.043 0.957 45 H 0.086 0.914 46 H 0.072 0.928 47 H 0.050 0.950 48 H 0.091 0.909 49 H 0.074 0.926 50 H 0.087 0.913 51 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -25.224 18.681 9.453 32.781 hybrid contribution -0.401 0.081 1.819 1.865 sum -25.626 18.762 11.272 33.701 Atomic orbital electron populations 1.21868 0.91958 1.03442 1.03369 1.22588 0.95838 0.92767 0.87242 1.22367 1.02209 0.95630 1.03553 1.86131 1.29072 1.66806 1.39147 1.20455 0.85636 0.93231 0.95134 1.21710 0.96057 1.04636 0.98224 1.21943 0.94513 0.92962 0.99302 1.21119 0.96048 1.01816 0.90772 1.17793 0.84854 0.78994 0.82898 1.90770 1.55458 1.62501 1.33330 1.47968 1.14068 1.50125 1.19583 1.22067 0.93569 1.00911 0.88974 1.21196 0.80413 0.93848 1.00372 1.22373 0.98822 0.99180 0.97527 1.20888 0.92452 0.84210 0.99848 1.44359 1.57079 1.00715 1.31007 1.18936 1.29197 0.99178 0.91321 0.89649 1.25353 0.97882 0.97254 0.97257 1.69759 1.45835 1.08382 1.31951 0.86883 0.75873 0.78085 0.86900 1.21786 1.23389 1.19033 1.21426 0.89373 0.97481 0.91749 1.22395 0.99955 0.94092 1.01586 1.68207 1.04601 1.13486 1.25667 1.22407 0.92476 0.97025 0.97481 0.91205 0.91454 0.90267 0.90563 0.91126 0.90650 0.91841 0.83622 0.83195 0.92330 0.91586 0.89606 0.88588 0.91467 0.92492 0.95698 0.91422 0.92800 0.95025 0.90949 0.92562 0.91265 0.81278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.52 9.56 37.16 0.36 -0.17 16 2 C 0.07 0.35 2.86 -26.73 -0.08 0.27 16 3 C -0.18 -0.76 9.32 37.16 0.35 -0.42 16 4 O -0.30 -2.24 9.80 -18.86 -0.18 -2.42 16 5 C 0.10 0.88 6.64 -38.84 -0.26 0.63 16 6 C -0.18 -1.47 8.54 -39.18 -0.33 -1.80 16 7 C -0.07 -0.70 9.62 -39.09 -0.38 -1.08 16 8 C 0.04 0.51 6.56 -83.02 -0.54 -0.03 16 9 C 0.57 8.99 7.64 -12.29 -0.09 8.89 16 10 O -0.54 -10.02 15.68 5.33 0.08 -9.94 16 11 N -0.59 -9.10 2.76 -174.97 -0.48 -9.58 16 12 C 0.09 1.14 8.18 59.85 0.49 1.63 16 13 C 0.14 2.51 2.47 -67.89 -0.17 2.34 16 14 C -0.14 -2.39 5.34 -26.61 -0.14 -2.54 16 15 C 0.15 3.07 6.52 -3.71 -0.02 3.05 16 16 N -0.61 -14.61 2.78 -172.32 -0.48 -15.09 16 17 C -0.26 -7.26 10.08 -15.06 -0.15 -7.41 16 18 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 19 C 0.02 0.62 5.37 -17.43 -0.09 0.52 16 20 N -0.92 -28.38 13.97 55.49 0.78 -27.61 16 21 Si 0.89 22.91 24.27 -169.99 -4.13 18.78 16 22 H -0.29 -7.22 6.72 56.52 0.38 -6.84 16 23 H -0.31 -7.99 7.11 56.52 0.40 -7.59 16 24 H -0.27 -6.66 5.93 56.52 0.34 -6.33 16 25 C 0.13 2.81 4.11 -3.71 -0.02 2.80 16 26 C -0.14 -2.61 5.32 -26.61 -0.14 -2.75 16 27 N -0.41 -4.66 6.16 -9.67 -0.06 -4.72 16 28 C 0.07 0.62 11.14 -17.37 -0.19 0.43 16 29 H 0.07 0.25 8.14 -51.92 -0.42 -0.17 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.08 0.32 5.94 -51.93 -0.31 0.01 16 33 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.06 0.32 7.56 -51.93 -0.39 -0.07 16 36 H 0.15 0.80 5.86 -52.48 -0.31 0.49 16 37 H 0.15 1.52 7.65 -52.48 -0.40 1.11 16 38 H 0.06 0.73 8.00 -51.93 -0.42 0.31 16 39 H 0.07 0.87 6.46 -51.93 -0.34 0.54 16 40 H 0.09 1.04 5.75 -51.93 -0.30 0.74 16 41 H 0.10 1.84 6.91 -51.93 -0.36 1.48 16 42 H 0.07 1.16 7.72 -51.92 -0.40 0.76 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.07 1.34 7.93 -51.93 -0.41 0.93 16 46 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 47 H 0.03 0.72 6.65 -51.93 -0.35 0.37 16 48 H 0.07 1.75 4.31 -51.93 -0.22 1.53 16 49 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 50 H 0.07 1.28 6.72 -51.93 -0.35 0.93 16 51 H 0.17 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 391.48 15.07 5.90 5.90 Total: -1.00 -33.46 391.48 -8.00 -41.46 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -8.00 Total: -1.16 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: -1.42 Total: 4.37 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: -0.25 Total: -56.99 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: -0.10 Total: -12.36 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -4.13 Total: 18.78 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.46 -8.00 -41.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006487926.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.562 kcal (2) G-P(sol) polarization free energy of solvation -33.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds