Wall clock time and date at job start Wed Apr 1 2020 04:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47047 * 2 1 4 4 O 1.42894 * 109.47485 * 239.99700 * 2 1 3 5 5 C 1.35717 * 117.00315 * 205.91950 * 4 2 1 6 6 C 1.39227 * 120.38217 * 1.35508 * 5 4 2 7 7 C 1.38322 * 118.44838 * 179.97438 * 6 5 4 8 8 C 1.39465 * 119.13174 * 0.02562 * 7 6 5 9 9 C 1.47930 * 119.65628 * 180.02562 * 8 7 6 10 10 O 1.21538 * 120.00034 * 352.94730 * 9 8 7 11 11 N 1.34779 * 119.99890 * 172.95782 * 9 8 7 12 12 C 1.46509 * 119.99905 * 354.65520 * 11 9 8 13 13 C 1.46497 * 120.00027 * 174.66168 * 11 9 8 14 14 C 1.53040 * 109.45867 * 240.02468 * 13 11 9 15 15 C 1.53194 * 109.31161 * 178.60064 * 14 13 11 16 16 N 1.46929 * 108.76566 * 54.65303 * 15 14 13 17 17 C 1.36934 * 120.62870 * 126.40364 * 16 15 14 18 18 H 1.07997 * 120.00547 * 329.62666 * 17 16 15 19 19 C 1.38817 * 120.00018 * 149.62373 * 17 16 15 20 20 N 1.31620 * 120.00135 * 168.03426 * 19 17 16 21 21 Si 1.86802 * 119.99914 * 348.03859 * 19 17 16 22 22 H 1.48497 * 109.47250 * 92.85297 * 21 19 17 23 23 H 1.48498 * 109.47138 * 212.85965 * 21 19 17 24 24 H 1.48505 * 109.46734 * 332.85648 * 21 19 17 25 25 C 1.46924 * 118.73872 * 306.38555 * 16 15 14 26 26 C 1.53036 * 109.46133 * 119.96707 * 13 11 9 27 27 N 1.32800 * 120.68666 * 359.97104 * 8 7 6 28 28 C 1.31378 * 121.69159 * 359.77912 * 27 8 7 29 29 H 1.09008 * 109.47019 * 60.00783 * 1 2 3 30 30 H 1.09004 * 109.46898 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47671 * 300.00538 * 1 2 3 32 32 H 1.09002 * 109.47273 * 119.99579 * 2 1 3 33 33 H 1.09002 * 109.46740 * 299.99905 * 3 2 1 34 34 H 1.08994 * 109.47325 * 59.99249 * 3 2 1 35 35 H 1.09000 * 109.47265 * 180.02562 * 3 2 1 36 36 H 1.08003 * 120.77768 * 359.96094 * 6 5 4 37 37 H 1.08008 * 120.43430 * 179.97438 * 7 6 5 38 38 H 1.08997 * 109.46517 * 85.00763 * 12 11 9 39 39 H 1.08994 * 109.46808 * 205.00918 * 12 11 9 40 40 H 1.08994 * 109.46650 * 325.00874 * 12 11 9 41 41 H 1.09001 * 109.45864 * 359.97438 * 13 11 9 42 42 H 1.09010 * 109.49600 * 298.56359 * 14 13 11 43 43 H 1.09000 * 109.50085 * 58.66263 * 14 13 11 44 44 H 1.08998 * 109.59680 * 294.86837 * 15 14 13 45 45 H 1.09003 * 109.70150 * 174.50476 * 15 14 13 46 46 H 0.97001 * 120.00078 * 180.02562 * 20 19 17 47 47 H 1.08996 * 109.58523 * 293.81994 * 25 16 15 48 48 H 1.08996 * 109.69988 * 173.46442 * 25 16 15 49 49 H 1.08997 * 109.50047 * 301.33885 * 26 13 11 50 50 H 1.09002 * 109.49876 * 61.43317 * 26 13 11 51 51 H 1.08000 * 119.59655 * 180.24083 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 3.2372 -1.2406 -1.0915 6 6 3.9697 -1.1792 0.0909 7 6 5.2195 -1.7709 0.1233 8 6 5.7006 -2.4044 -1.0223 9 6 7.0355 -3.0415 -1.0005 10 8 7.7595 -2.9025 -0.0342 11 7 7.4489 -3.7761 -2.0522 12 6 6.5340 -4.0412 -3.1653 13 6 8.8130 -4.3095 -2.0822 14 6 9.5494 -3.7576 -3.3050 15 6 10.9859 -4.2896 -3.3140 16 7 10.9470 -5.7568 -3.2446 17 6 11.6051 -6.5168 -4.1743 18 1 11.7320 -6.1481 -5.1814 19 6 12.1091 -7.7615 -3.8224 20 7 12.5285 -8.5895 -4.7555 21 14 12.1919 -8.2612 -2.0243 22 1 10.9574 -9.0011 -1.6588 23 1 13.3743 -9.1328 -1.8068 24 1 12.3099 -7.0466 -1.1780 25 6 10.1890 -6.3928 -2.1586 26 6 8.7615 -5.8368 -2.1623 27 7 4.9724 -2.4425 -2.1322 28 6 3.7799 -1.8946 -2.1944 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 1.6765 1.9564 0.8899 35 1 3.1300 1.4426 -0.0005 36 1 3.5714 -0.6810 0.9625 37 1 5.8154 -1.7421 1.0237 38 1 6.5658 -3.2084 -3.8679 39 1 6.8358 -4.9570 -3.6734 40 1 5.5198 -4.1552 -2.7827 41 1 9.3397 -4.0106 -1.1759 42 1 9.0372 -4.0767 -4.2128 43 1 9.5653 -2.6686 -3.2593 44 1 11.5265 -3.8973 -2.4527 45 1 11.4866 -3.9803 -4.2315 46 1 12.8803 -9.4594 -4.5096 47 1 10.6646 -6.1720 -1.2030 48 1 10.1615 -7.4715 -2.3124 49 1 8.2165 -6.2281 -1.3032 50 1 8.2569 -6.1362 -3.0809 51 1 3.2152 -1.9490 -3.1134 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006487926.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:58 Heat of formation + Delta-G solvation = -12.608014 kcal Electronic energy + Delta-G solvation = -30816.157143 eV Core-core repulsion = 26716.763639 eV Total energy + Delta-G solvation = -4099.393505 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.13505 -41.05372 -39.66132 -38.89644 -36.73449 -34.53671 -34.22993 -33.40376 -32.38936 -32.03363 -31.08790 -28.20055 -27.96106 -27.09157 -25.60209 -24.86177 -24.44235 -23.52642 -22.38260 -21.29814 -20.52941 -19.43254 -18.84693 -18.52466 -17.99989 -17.45743 -16.95746 -16.79799 -16.38808 -16.05985 -15.94595 -15.65536 -15.42171 -15.34621 -14.96547 -14.74600 -14.66015 -14.40053 -14.31897 -14.09490 -13.94303 -13.75033 -13.57368 -13.45862 -13.43604 -13.19194 -12.92043 -12.76290 -12.67327 -12.49492 -12.18216 -12.01864 -11.99077 -11.73465 -11.67683 -11.41451 -11.39352 -11.33189 -10.94427 -10.78852 -10.38423 -9.73250 -9.45330 -8.92559 -8.14958 -5.54177 -0.39119 0.08385 1.29024 1.41113 1.49013 1.62591 1.84155 2.01166 2.40548 2.72514 3.06664 3.10198 3.28122 3.47129 3.57784 3.74612 3.76192 3.87294 3.93217 3.95905 3.98902 4.14558 4.18197 4.28207 4.34023 4.46660 4.58598 4.62263 4.66719 4.68628 4.72844 4.76555 4.80934 4.84291 4.84998 4.87578 4.91036 4.92586 5.01543 5.04896 5.07131 5.14551 5.22995 5.27266 5.31031 5.39927 5.55958 5.88504 6.13378 6.14065 6.33127 6.63662 6.89874 7.04766 7.59654 8.01728 9.04546 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.031132 B = 0.002025 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.183758 B =13821.928511 C =13979.599556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.062 3.938 3 C -0.179 4.179 4 O -0.305 6.305 5 C 0.116 3.884 6 C -0.172 4.172 7 C -0.068 4.068 8 C 0.013 3.987 9 C 0.565 3.435 10 O -0.578 6.578 11 N -0.589 5.589 12 C 0.092 3.908 13 C 0.151 3.849 14 C -0.124 4.124 15 C 0.148 3.852 16 N -0.620 5.620 17 C -0.244 4.244 18 H 0.056 0.944 19 C -0.036 4.036 20 N -0.961 5.961 21 Si 0.950 3.050 22 H -0.277 1.277 23 H -0.313 1.313 24 H -0.256 1.256 25 C 0.122 3.878 26 C -0.129 4.129 27 N -0.417 5.417 28 C 0.064 3.936 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.094 0.906 35 H 0.054 0.946 36 H 0.174 0.826 37 H 0.150 0.850 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.032 0.968 45 H 0.065 0.935 46 H 0.261 0.739 47 H 0.033 0.967 48 H 0.054 0.946 49 H 0.069 0.931 50 H 0.070 0.930 51 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.000 21.157 11.521 37.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.007 3.993 3 C -0.236 4.236 4 O -0.216 6.216 5 C 0.066 3.934 6 C -0.198 4.198 7 C -0.089 4.089 8 C -0.123 4.123 9 C 0.353 3.647 10 O -0.458 6.458 11 N -0.318 5.318 12 C -0.050 4.050 13 C 0.048 3.952 14 C -0.164 4.164 15 C 0.023 3.977 16 N -0.344 5.344 17 C -0.374 4.374 18 H 0.074 0.926 19 C -0.230 4.230 20 N -0.608 5.608 21 Si 0.780 3.220 22 H -0.204 1.204 23 H -0.242 1.242 24 H -0.181 1.181 25 C -0.003 4.003 26 C -0.169 4.169 27 N -0.129 5.129 28 C -0.098 4.098 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.117 0.883 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.112 0.888 35 H 0.073 0.927 36 H 0.192 0.808 37 H 0.167 0.833 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.115 0.885 41 H 0.099 0.901 42 H 0.086 0.914 43 H 0.094 0.906 44 H 0.050 0.950 45 H 0.084 0.916 46 H 0.070 0.930 47 H 0.051 0.949 48 H 0.072 0.928 49 H 0.087 0.913 50 H 0.089 0.911 51 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -28.330 20.693 11.100 36.796 hybrid contribution 0.369 -0.362 1.268 1.370 sum -27.960 20.331 12.368 36.716 Atomic orbital electron populations 1.21899 0.90867 1.03500 1.04215 1.22898 0.96712 0.92982 0.86688 1.22370 1.01628 0.95285 1.04314 1.86152 1.28278 1.66541 1.40668 1.20503 0.85893 0.92128 0.94868 1.21935 0.94904 1.03799 0.99138 1.21989 0.95404 0.92870 0.98615 1.20740 0.95319 1.03971 0.92290 1.18253 0.85787 0.78477 0.82145 1.90737 1.56794 1.63755 1.34526 1.47939 1.13451 1.50103 1.20354 1.22149 0.93557 1.00961 0.88307 1.20912 0.81769 0.92962 0.99584 1.22183 0.96612 1.00090 0.97514 1.21042 0.94611 0.82010 1.00053 1.44467 1.57258 1.02096 1.30627 1.18871 1.28275 0.99217 0.91004 0.92617 1.25976 0.98481 0.97608 1.00967 1.69891 1.48010 1.08973 1.33896 0.85919 0.75836 0.77916 0.82330 1.20443 1.24196 1.18056 1.21419 0.91417 0.96545 0.90967 1.22223 0.97411 0.94966 1.02252 1.68078 1.05403 1.14180 1.25273 1.22767 0.91864 0.96545 0.98653 0.91493 0.91787 0.88338 0.89420 0.91588 0.88768 0.92678 0.80846 0.83276 0.91565 0.91929 0.88535 0.90124 0.91397 0.90634 0.94970 0.91610 0.92978 0.94866 0.92774 0.91267 0.91117 0.79144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.56 71.98 0.69 0.08 16 2 C 0.06 0.42 2.86 30.59 0.09 0.50 16 3 C -0.18 -0.99 9.32 71.98 0.67 -0.32 16 4 O -0.30 -3.66 9.80 -90.39 -0.89 -4.55 16 5 C 0.12 1.64 6.64 22.75 0.15 1.79 16 6 C -0.17 -2.33 8.54 22.53 0.19 -2.14 16 7 C -0.07 -1.33 9.62 22.59 0.22 -1.11 16 8 C 0.01 0.31 6.56 41.86 0.27 0.58 16 9 C 0.56 17.44 7.64 86.81 0.66 18.10 16 10 O -0.58 -21.22 15.68 -3.84 -0.06 -21.28 16 11 N -0.59 -17.53 2.76 -825.77 -2.28 -19.81 16 12 C 0.09 2.24 8.18 127.77 1.04 3.29 16 13 C 0.15 5.10 2.47 45.02 0.11 5.21 16 14 C -0.12 -4.12 5.34 30.67 0.16 -3.96 16 15 C 0.15 5.88 6.52 86.36 0.56 6.44 16 16 N -0.62 -29.70 2.78 -699.10 -1.94 -31.64 16 17 C -0.24 -13.99 10.08 84.04 0.85 -13.14 16 18 H 0.06 3.47 8.06 -2.91 -0.02 3.44 16 19 C -0.04 -2.13 5.37 84.86 0.46 -1.68 16 20 N -0.96 -61.20 13.97 21.65 0.30 -60.89 16 21 Si 0.95 47.90 24.27 68.60 1.67 49.57 16 22 H -0.28 -13.29 6.72 99.48 0.67 -12.62 16 23 H -0.31 -16.02 7.11 99.48 0.71 -15.31 16 24 H -0.26 -12.37 5.93 99.48 0.59 -11.78 16 25 C 0.12 5.36 4.11 86.36 0.36 5.71 16 26 C -0.13 -4.64 5.32 30.67 0.16 -4.47 16 27 N -0.42 -8.75 6.16 -184.52 -1.14 -9.89 16 28 C 0.06 1.02 11.14 85.00 0.95 1.97 16 29 H 0.07 0.33 8.14 -2.38 -0.02 0.31 16 30 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.10 0.04 8.14 -2.39 -0.02 0.02 16 32 H 0.09 0.40 5.94 -2.39 -0.01 0.38 16 33 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.09 0.18 8.14 -2.39 -0.02 0.16 16 35 H 0.05 0.41 7.56 -2.39 -0.02 0.39 16 36 H 0.17 1.28 5.86 -2.91 -0.02 1.27 16 37 H 0.15 2.87 7.65 -2.91 -0.02 2.85 16 38 H 0.07 1.52 8.00 -2.39 -0.02 1.50 16 39 H 0.06 1.56 6.46 -2.39 -0.02 1.54 16 40 H 0.10 2.17 5.75 -2.39 -0.01 2.16 16 41 H 0.08 3.03 6.91 -2.39 -0.02 3.01 16 42 H 0.07 2.26 7.72 -2.38 -0.02 2.24 16 43 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 44 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.07 2.60 7.93 -2.39 -0.02 2.58 16 46 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 47 H 0.03 1.46 6.65 -2.39 -0.02 1.44 16 48 H 0.05 2.58 4.31 -2.39 -0.01 2.57 16 49 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 50 H 0.07 2.53 6.72 -2.39 -0.02 2.52 16 51 H 0.19 2.09 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -73.39 391.48 4.04 -69.35 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: 0.78 Total: 12.29 kcal Atomic # 6 Polarization: 9.26 SS G_CDS: 7.60 Total: 16.86 kcal Atomic # 7 Polarization: -117.18 SS G_CDS: -5.05 Total: -122.23 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.95 Total: -25.83 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 1.67 Total: 49.57 kcal Total: -73.39 4.04 -69.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006487926.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.743 kcal (2) G-P(sol) polarization free energy of solvation -73.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds