Wall clock time and date at job start Wed Apr 1 2020 04:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46904 * 2 1 4 4 O 1.42910 * 109.46777 * 179.97438 * 3 2 1 5 5 C 1.35428 * 116.99831 * 179.97438 * 4 3 2 6 6 N 1.32237 * 119.80097 * 359.72974 * 5 4 3 7 7 C 1.31878 * 121.79927 * 179.70579 * 6 5 4 8 8 C 1.50701 * 119.40995 * 180.29317 * 7 6 5 9 9 C 1.38356 * 121.18651 * 0.57104 * 7 6 5 10 10 C 1.38346 * 119.45633 * 359.71764 * 9 7 6 11 11 C 1.39980 * 118.34680 * 0.02562 * 10 9 7 12 12 C 1.47525 * 120.59435 * 179.97438 * 11 10 9 13 13 O 1.21591 * 120.00071 * 180.02562 * 12 11 10 14 14 N 1.34780 * 120.00226 * 0.02562 * 12 11 10 15 15 C 1.46496 * 120.00294 * 180.02562 * 14 12 11 16 16 H 1.09001 * 109.49769 * 324.99709 * 15 14 12 17 17 C 1.53037 * 109.49741 * 204.93373 * 15 14 12 18 18 C 1.53049 * 109.53608 * 178.68233 * 17 15 14 19 19 C 1.53197 * 109.31085 * 61.36557 * 18 17 15 20 20 N 1.46921 * 108.77578 * 305.36118 * 19 18 17 21 21 C 1.36936 * 120.63396 * 233.61321 * 20 19 18 22 22 H 1.08000 * 120.00205 * 152.63003 * 21 20 19 23 23 C 1.38818 * 119.99667 * 332.62671 * 21 20 19 24 24 N 1.31613 * 119.99815 * 159.34414 * 23 21 20 25 25 Si 1.86807 * 119.99873 * 339.34404 * 23 21 20 26 26 H 1.48496 * 109.46982 * 92.95622 * 25 23 21 27 27 H 1.48500 * 109.46791 * 212.95569 * 25 23 21 28 28 H 1.48496 * 109.47182 * 332.95303 * 25 23 21 29 29 C 1.46937 * 118.76259 * 53.59081 * 20 19 18 30 30 H 1.09008 * 109.47196 * 300.00247 * 1 2 3 31 31 H 1.09003 * 109.47442 * 59.99833 * 1 2 3 32 32 H 1.08994 * 109.47569 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.46977 * 239.99855 * 2 1 3 34 34 H 1.09004 * 109.46955 * 119.99574 * 2 1 3 35 35 H 1.08995 * 109.47422 * 60.00128 * 3 2 1 36 36 H 1.08998 * 109.47300 * 299.99838 * 3 2 1 37 37 H 1.09001 * 109.46711 * 270.27678 * 8 7 6 38 38 H 1.08996 * 109.46958 * 30.26909 * 8 7 6 39 39 H 1.08996 * 109.47606 * 150.27379 * 8 7 6 40 40 H 1.07996 * 120.27363 * 179.74544 * 9 7 6 41 41 H 1.08000 * 120.82598 * 179.97438 * 10 9 7 42 42 H 0.96994 * 119.99706 * 359.97438 * 14 12 11 43 43 H 1.09000 * 109.46236 * 298.69897 * 17 15 14 44 44 H 1.08999 * 109.46093 * 58.66283 * 17 15 14 45 45 H 1.08999 * 109.49620 * 181.31722 * 18 17 15 46 46 H 1.08998 * 109.49672 * 301.38394 * 18 17 15 47 47 H 1.08996 * 109.58820 * 65.15368 * 19 18 17 48 48 H 1.09000 * 109.58434 * 185.43439 * 19 18 17 49 49 H 0.97002 * 120.00018 * 179.97438 * 24 23 21 50 50 H 1.09007 * 109.61538 * 186.63895 * 29 20 19 51 51 H 1.08998 * 109.55973 * 66.21717 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0839 2.6492 0.0001 6 7 3.3598 3.7557 -0.0062 7 6 3.9171 4.9509 -0.0012 8 6 3.0401 6.1764 -0.0022 9 6 5.2926 5.1000 -0.0007 10 6 6.0988 3.9757 0.0003 11 6 5.4850 2.7177 0.0003 12 6 6.2970 1.4860 0.0008 13 8 5.7525 0.3988 0.0003 14 7 7.6424 1.5658 0.0018 15 6 8.4488 0.3427 0.0018 16 1 7.9459 -0.4246 0.5904 17 6 9.8216 0.6360 0.6111 18 6 10.6531 -0.6486 0.6416 19 6 10.8574 -1.1539 -0.7902 20 7 9.5439 -1.3004 -1.4320 21 6 9.1801 -2.4852 -2.0142 22 1 8.1366 -2.7550 -2.0830 23 6 10.1525 -3.3394 -2.5160 24 7 9.8787 -4.6138 -2.6976 25 14 11.8497 -2.6799 -2.9334 26 1 12.7479 -2.8486 -1.7631 27 1 12.4002 -3.4281 -4.0920 28 1 11.7500 -1.2387 -3.2772 29 6 8.6275 -0.1518 -1.4371 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6767 1.9564 0.8899 36 1 1.6766 1.9564 -0.8900 37 1 2.8290 6.4712 -1.0301 38 1 2.1047 5.9541 0.5113 39 1 3.5521 6.9901 0.5114 40 1 5.7334 6.0859 -0.0007 41 1 7.1750 4.0664 0.0003 42 1 8.0768 2.4331 0.0019 43 1 10.3339 1.3858 0.0082 44 1 9.6956 1.0111 1.6267 45 1 11.6220 -0.4441 1.0970 46 1 10.1299 -1.4068 1.2242 47 1 11.4590 -0.4366 -1.3484 48 1 11.3653 -2.1181 -0.7683 49 1 10.5580 -5.2106 -3.0486 50 1 7.6620 -0.4559 -1.8416 51 1 9.0470 0.6470 -2.0486 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009033908.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:01 Heat of formation + Delta-G solvation = -21.491066 kcal Electronic energy + Delta-G solvation = -30988.455544 eV Core-core repulsion = 26888.676841 eV Total energy + Delta-G solvation = -4099.778703 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.11372 -39.33348 -38.37555 -37.48604 -34.46633 -34.13776 -33.38582 -32.31939 -31.83129 -30.80538 -29.39942 -28.18510 -26.53440 -25.27803 -23.70625 -23.26144 -22.43174 -21.94328 -21.56700 -20.28295 -19.73617 -18.48808 -17.52828 -16.99543 -16.67046 -16.58653 -15.50657 -15.28777 -15.08322 -14.84180 -14.60875 -14.56515 -14.38801 -13.93392 -13.89614 -13.65018 -13.33986 -13.18760 -13.06993 -12.76436 -12.56693 -12.55287 -12.44846 -12.32188 -12.21231 -12.04678 -11.50564 -11.50128 -11.18835 -11.10778 -10.88689 -10.73565 -10.70449 -10.19142 -10.13287 -10.10337 -9.94788 -9.71549 -9.54469 -9.40578 -8.95119 -8.64120 -8.45445 -6.92935 -5.88765 -3.25030 0.48258 1.00746 2.82774 2.92564 3.25127 3.34169 3.50696 3.53746 3.70440 3.85224 4.32955 4.57126 4.58818 4.66141 4.77345 4.79878 4.88694 5.03273 5.06553 5.13486 5.16943 5.18564 5.25515 5.28852 5.30701 5.38839 5.45023 5.48013 5.54642 5.57924 5.61944 5.74299 5.81968 5.85255 5.95875 5.97497 6.04003 6.06506 6.16936 6.22129 6.32890 6.45512 6.58547 6.65943 6.68217 6.82503 6.97623 7.13864 7.52925 7.73761 8.01944 8.39561 8.48383 9.00248 9.77453 10.13212 11.27315 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012139 B = 0.002774 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.020843 B =10090.041961 C =11735.669707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.127 4.127 3 C 0.067 3.933 4 O -0.265 6.265 5 C 0.380 3.620 6 N -0.547 5.547 7 C 0.189 3.811 8 C -0.108 4.108 9 C -0.223 4.223 10 C -0.006 4.006 11 C -0.211 4.211 12 C 0.559 3.441 13 O -0.506 6.506 14 N -0.722 5.722 15 C 0.127 3.873 16 H 0.092 0.908 17 C -0.116 4.116 18 C -0.132 4.132 19 C 0.122 3.878 20 N -0.601 5.601 21 C -0.257 4.257 22 H 0.087 0.913 23 C 0.023 3.977 24 N -0.908 5.908 25 Si 0.883 3.117 26 H -0.289 1.289 27 H -0.304 1.304 28 H -0.272 1.272 29 C 0.145 3.855 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.391 0.609 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.068 0.932 47 H 0.025 0.975 48 H 0.074 0.926 49 H 0.262 0.738 50 H 0.068 0.932 51 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.258 23.655 8.526 27.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.164 4.164 3 C -0.009 4.009 4 O -0.169 6.169 5 C 0.200 3.800 6 N -0.273 5.273 7 C 0.051 3.949 8 C -0.165 4.165 9 C -0.243 4.243 10 C -0.032 4.032 11 C -0.218 4.218 12 C 0.344 3.656 13 O -0.381 6.381 14 N -0.374 5.374 15 C 0.022 3.978 16 H 0.110 0.890 17 C -0.154 4.154 18 C -0.172 4.172 19 C -0.004 4.004 20 N -0.325 5.325 21 C -0.385 4.385 22 H 0.105 0.895 23 C -0.176 4.176 24 N -0.551 5.551 25 Si 0.714 3.286 26 H -0.216 1.216 27 H -0.232 1.232 28 H -0.197 1.197 29 C 0.017 3.983 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.160 0.840 41 H 0.162 0.838 42 H 0.225 0.775 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.086 0.914 47 H 0.043 0.957 48 H 0.092 0.908 49 H 0.072 0.928 50 H 0.086 0.914 51 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -13.436 22.258 8.438 27.334 hybrid contribution 2.038 0.975 -0.317 2.282 sum -11.398 23.233 8.121 27.122 Atomic orbital electron populations 1.21666 0.94351 1.02408 1.01921 1.21518 0.95742 0.94862 1.04301 1.22784 0.77605 0.98365 1.02116 1.86559 1.22244 1.22888 1.85243 1.19784 0.88098 0.84831 0.87293 1.67296 1.40340 0.98203 1.21463 1.21158 0.92159 0.91992 0.89559 1.20811 0.99378 0.92776 1.03538 1.21697 0.93846 0.99863 1.08906 1.21620 1.00536 0.90497 0.90563 1.20115 0.91664 0.95199 1.14788 1.17732 0.82139 0.88203 0.77497 1.90885 1.71386 1.28148 1.47672 1.45967 1.05637 1.09874 1.75967 1.21687 0.90280 0.85713 1.00096 0.89033 1.21681 0.95143 0.98707 0.99858 1.22000 0.98770 0.96644 0.99738 1.21392 0.88402 0.99710 0.90854 1.44294 1.13786 1.10313 1.64121 1.18968 0.94713 0.92701 1.32135 0.89548 1.25268 0.97800 0.95509 0.99024 1.69845 1.34600 1.02558 1.48113 0.86947 0.85445 0.79067 0.77182 1.21635 1.23222 1.19662 1.21223 0.95028 0.89611 0.92388 0.92579 0.92494 0.91732 0.90504 0.90678 0.91785 0.91684 0.89816 0.90231 0.90154 0.84045 0.83793 0.77530 0.92149 0.92430 0.92254 0.91355 0.95698 0.90764 0.92815 0.91378 0.96065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 37.16 0.37 -0.82 16 2 C -0.13 -1.39 6.30 -26.73 -0.17 -1.56 16 3 C 0.07 0.80 5.31 37.16 0.20 1.00 16 4 O -0.27 -4.19 8.22 -39.75 -0.33 -4.52 16 5 C 0.38 5.49 7.51 -16.61 -0.12 5.36 16 6 N -0.55 -6.68 9.11 -9.21 -0.08 -6.77 16 7 C 0.19 1.75 6.78 -82.53 -0.56 1.20 16 8 C -0.11 -0.60 10.16 36.01 0.37 -0.24 16 9 C -0.22 -1.78 9.71 -39.50 -0.38 -2.16 16 10 C -0.01 -0.06 9.64 -38.89 -0.37 -0.44 16 11 C -0.21 -2.87 5.90 -104.69 -0.62 -3.49 16 12 C 0.56 9.20 7.74 -12.47 -0.10 9.10 16 13 O -0.51 -10.64 14.86 -16.49 -0.24 -10.89 16 14 N -0.72 -10.25 5.03 -54.74 -0.28 -10.53 16 15 C 0.13 2.22 2.60 -67.81 -0.18 2.04 16 16 H 0.09 1.87 7.58 -51.93 -0.39 1.48 16 17 C -0.12 -1.71 5.36 -26.69 -0.14 -1.85 16 18 C -0.13 -2.28 6.08 -26.60 -0.16 -2.44 16 19 C 0.12 2.66 4.20 -3.71 -0.02 2.65 16 20 N -0.60 -14.80 2.77 -172.31 -0.48 -15.28 16 21 C -0.26 -7.50 10.03 -15.06 -0.15 -7.65 16 22 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 23 C 0.02 0.67 5.23 -17.43 -0.09 0.58 16 24 N -0.91 -28.60 13.97 55.49 0.78 -27.83 16 25 Si 0.88 22.72 24.35 -169.99 -4.14 18.58 16 26 H -0.29 -7.09 6.62 56.52 0.37 -6.72 16 27 H -0.30 -7.96 7.11 56.52 0.40 -7.56 16 28 H -0.27 -6.84 6.63 56.52 0.37 -6.46 16 29 C 0.14 3.06 6.09 -3.70 -0.02 3.03 16 30 H 0.06 0.41 8.14 -51.92 -0.42 -0.02 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.71 8.11 -51.93 -0.42 0.29 16 36 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.28 8.07 -51.93 -0.42 -0.14 16 40 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 41 H 0.14 0.91 6.52 -52.49 -0.34 0.56 16 42 H 0.39 4.04 6.70 -40.82 -0.27 3.76 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 47 H 0.03 0.53 7.08 -51.93 -0.37 0.16 16 48 H 0.07 1.78 4.50 -51.93 -0.23 1.55 16 49 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 50 H 0.07 1.59 7.93 -51.93 -0.41 1.18 16 51 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 403.94 15.07 6.09 6.09 Total: -1.00 -36.15 403.94 -9.23 -45.38 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -8.39 Total: 1.44 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: -2.16 Total: 4.31 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: -0.06 Total: -60.40 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.57 Total: -15.41 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.14 Total: 18.58 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.15 -9.23 -45.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009033908.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.892 kcal (2) G-P(sol) polarization free energy of solvation -36.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds