Wall clock time and date at job start Wed Apr 1 2020 04:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46904 * 2 1 4 4 O 1.42910 * 109.46777 * 179.97438 * 3 2 1 5 5 C 1.35428 * 116.99831 * 179.97438 * 4 3 2 6 6 N 1.32237 * 119.80097 * 359.72974 * 5 4 3 7 7 C 1.31878 * 121.79927 * 179.70579 * 6 5 4 8 8 C 1.50701 * 119.40995 * 180.29317 * 7 6 5 9 9 C 1.38356 * 121.18651 * 0.57104 * 7 6 5 10 10 C 1.38346 * 119.45633 * 359.71764 * 9 7 6 11 11 C 1.39980 * 118.34680 * 0.02562 * 10 9 7 12 12 C 1.47525 * 120.59435 * 179.97438 * 11 10 9 13 13 O 1.21591 * 120.00071 * 180.02562 * 12 11 10 14 14 N 1.34780 * 120.00226 * 0.02562 * 12 11 10 15 15 C 1.46496 * 120.00294 * 180.02562 * 14 12 11 16 16 H 1.09001 * 109.49769 * 324.99709 * 15 14 12 17 17 C 1.53037 * 109.49741 * 204.93373 * 15 14 12 18 18 C 1.53049 * 109.53608 * 178.68233 * 17 15 14 19 19 C 1.53197 * 109.31085 * 61.36557 * 18 17 15 20 20 N 1.46921 * 108.77578 * 305.36118 * 19 18 17 21 21 C 1.36936 * 120.63396 * 233.61321 * 20 19 18 22 22 H 1.08000 * 120.00205 * 152.63003 * 21 20 19 23 23 C 1.38818 * 119.99667 * 332.62671 * 21 20 19 24 24 N 1.31613 * 119.99815 * 159.34414 * 23 21 20 25 25 Si 1.86807 * 119.99873 * 339.34404 * 23 21 20 26 26 H 1.48496 * 109.46982 * 92.95622 * 25 23 21 27 27 H 1.48500 * 109.46791 * 212.95569 * 25 23 21 28 28 H 1.48496 * 109.47182 * 332.95303 * 25 23 21 29 29 C 1.46937 * 118.76259 * 53.59081 * 20 19 18 30 30 H 1.09008 * 109.47196 * 300.00247 * 1 2 3 31 31 H 1.09003 * 109.47442 * 59.99833 * 1 2 3 32 32 H 1.08994 * 109.47569 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.46977 * 239.99855 * 2 1 3 34 34 H 1.09004 * 109.46955 * 119.99574 * 2 1 3 35 35 H 1.08995 * 109.47422 * 60.00128 * 3 2 1 36 36 H 1.08998 * 109.47300 * 299.99838 * 3 2 1 37 37 H 1.09001 * 109.46711 * 270.27678 * 8 7 6 38 38 H 1.08996 * 109.46958 * 30.26909 * 8 7 6 39 39 H 1.08996 * 109.47606 * 150.27379 * 8 7 6 40 40 H 1.07996 * 120.27363 * 179.74544 * 9 7 6 41 41 H 1.08000 * 120.82598 * 179.97438 * 10 9 7 42 42 H 0.96994 * 119.99706 * 359.97438 * 14 12 11 43 43 H 1.09000 * 109.46236 * 298.69897 * 17 15 14 44 44 H 1.08999 * 109.46093 * 58.66283 * 17 15 14 45 45 H 1.08999 * 109.49620 * 181.31722 * 18 17 15 46 46 H 1.08998 * 109.49672 * 301.38394 * 18 17 15 47 47 H 1.08996 * 109.58820 * 65.15368 * 19 18 17 48 48 H 1.09000 * 109.58434 * 185.43439 * 19 18 17 49 49 H 0.97002 * 120.00018 * 179.97438 * 24 23 21 50 50 H 1.09007 * 109.61538 * 186.63895 * 29 20 19 51 51 H 1.08998 * 109.55973 * 66.21717 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0839 2.6492 0.0001 6 7 3.3598 3.7557 -0.0062 7 6 3.9171 4.9509 -0.0012 8 6 3.0401 6.1764 -0.0022 9 6 5.2926 5.1000 -0.0007 10 6 6.0988 3.9757 0.0003 11 6 5.4850 2.7177 0.0003 12 6 6.2970 1.4860 0.0008 13 8 5.7525 0.3988 0.0003 14 7 7.6424 1.5658 0.0018 15 6 8.4488 0.3427 0.0018 16 1 7.9459 -0.4246 0.5904 17 6 9.8216 0.6360 0.6111 18 6 10.6531 -0.6486 0.6416 19 6 10.8574 -1.1539 -0.7902 20 7 9.5439 -1.3004 -1.4320 21 6 9.1801 -2.4852 -2.0142 22 1 8.1366 -2.7550 -2.0830 23 6 10.1525 -3.3394 -2.5160 24 7 9.8787 -4.6138 -2.6976 25 14 11.8497 -2.6799 -2.9334 26 1 12.7479 -2.8486 -1.7631 27 1 12.4002 -3.4281 -4.0920 28 1 11.7500 -1.2387 -3.2772 29 6 8.6275 -0.1518 -1.4371 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6767 1.9564 0.8899 36 1 1.6766 1.9564 -0.8900 37 1 2.8290 6.4712 -1.0301 38 1 2.1047 5.9541 0.5113 39 1 3.5521 6.9901 0.5114 40 1 5.7334 6.0859 -0.0007 41 1 7.1750 4.0664 0.0003 42 1 8.0768 2.4331 0.0019 43 1 10.3339 1.3858 0.0082 44 1 9.6956 1.0111 1.6267 45 1 11.6220 -0.4441 1.0970 46 1 10.1299 -1.4068 1.2242 47 1 11.4590 -0.4366 -1.3484 48 1 11.3653 -2.1181 -0.7683 49 1 10.5580 -5.2106 -3.0486 50 1 7.6620 -0.4559 -1.8416 51 1 9.0470 0.6470 -2.0486 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009033908.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:00 Heat of formation + Delta-G solvation = -48.065355 kcal Electronic energy + Delta-G solvation = -30989.607891 eV Core-core repulsion = 26888.676841 eV Total energy + Delta-G solvation = -4100.931050 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.04642 -40.63838 -39.30579 -39.04275 -36.02307 -35.02022 -34.60014 -33.83645 -32.68782 -32.58728 -30.79811 -29.00908 -27.42785 -27.19957 -24.85951 -24.02690 -23.73672 -23.63136 -22.52987 -21.48611 -21.28433 -19.45567 -18.80603 -18.61946 -17.87595 -17.56533 -17.31559 -16.65421 -16.29239 -15.82460 -15.75735 -15.56179 -15.43334 -15.39405 -15.24422 -14.84700 -14.64771 -14.60452 -14.14975 -14.02831 -13.77680 -13.72326 -13.31511 -13.27298 -13.22557 -13.06582 -12.97261 -12.79357 -12.58765 -12.44453 -12.29121 -12.05155 -11.84866 -11.67103 -11.61228 -11.49764 -11.36906 -11.17848 -10.97101 -10.82701 -10.60289 -10.19089 -9.48163 -8.93630 -8.18980 -5.53118 -0.37473 0.22979 1.29113 1.41174 1.52007 1.84370 1.94359 2.05288 2.40342 2.74906 3.02589 3.09173 3.34927 3.67840 3.70936 3.82360 3.85758 3.87021 3.96260 4.04085 4.08898 4.18532 4.26474 4.32293 4.35607 4.43468 4.49150 4.51254 4.65144 4.68455 4.70817 4.72201 4.81992 4.92498 4.94871 4.98179 5.00006 5.04647 5.05721 5.09405 5.10888 5.16357 5.21081 5.26636 5.37606 5.50192 5.54823 5.82784 6.08808 6.22328 6.56283 6.75913 6.88320 7.29626 7.58415 7.95832 9.01722 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012139 B = 0.002774 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.020843 B =10090.041961 C =11735.669707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.126 4.126 3 C 0.069 3.931 4 O -0.303 6.303 5 C 0.352 3.648 6 N -0.562 5.562 7 C 0.181 3.819 8 C -0.105 4.105 9 C -0.207 4.207 10 C 0.005 3.995 11 C -0.241 4.241 12 C 0.555 3.445 13 O -0.569 6.569 14 N -0.701 5.701 15 C 0.140 3.860 16 H 0.049 0.951 17 C -0.104 4.104 18 C -0.127 4.127 19 C 0.113 3.887 20 N -0.617 5.617 21 C -0.258 4.258 22 H 0.031 0.969 23 C -0.039 4.039 24 N -0.961 5.961 25 Si 0.962 3.038 26 H -0.264 1.264 27 H -0.311 1.311 28 H -0.255 1.255 29 C 0.146 3.854 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.096 0.904 38 H 0.074 0.926 39 H 0.111 0.889 40 H 0.188 0.812 41 H 0.181 0.819 42 H 0.415 0.585 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.101 0.899 46 H 0.046 0.954 47 H 0.047 0.953 48 H 0.050 0.950 49 H 0.263 0.737 50 H 0.023 0.977 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.795 29.415 9.659 32.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.164 4.164 3 C -0.006 4.006 4 O -0.208 6.208 5 C 0.173 3.827 6 N -0.288 5.288 7 C 0.044 3.956 8 C -0.162 4.162 9 C -0.226 4.226 10 C -0.021 4.021 11 C -0.247 4.247 12 C 0.343 3.657 13 O -0.448 6.448 14 N -0.355 5.355 15 C 0.034 3.966 16 H 0.068 0.932 17 C -0.142 4.142 18 C -0.166 4.166 19 C -0.011 4.011 20 N -0.342 5.342 21 C -0.387 4.387 22 H 0.049 0.951 23 C -0.233 4.233 24 N -0.607 5.607 25 Si 0.789 3.211 26 H -0.191 1.191 27 H -0.240 1.240 28 H -0.179 1.179 29 C 0.020 3.980 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.114 0.886 38 H 0.093 0.907 39 H 0.130 0.870 40 H 0.206 0.794 41 H 0.199 0.801 42 H 0.254 0.746 43 H 0.111 0.889 44 H 0.110 0.890 45 H 0.119 0.881 46 H 0.064 0.936 47 H 0.065 0.935 48 H 0.068 0.932 49 H 0.072 0.928 50 H 0.042 0.958 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -10.951 28.122 9.605 31.670 hybrid contribution 1.113 -0.718 -0.658 1.479 sum -9.838 27.404 8.947 30.460 Atomic orbital electron populations 1.21631 0.91713 1.03215 1.02980 1.21546 0.97967 0.94285 1.02611 1.22862 0.76584 0.98695 1.02478 1.86525 1.23731 1.24738 1.85845 1.20078 0.88781 0.85047 0.88800 1.67348 1.40611 0.98679 1.22150 1.22016 0.93902 0.91967 0.87759 1.20954 0.98886 0.91742 1.04631 1.22214 0.93005 1.01326 1.06086 1.22048 1.02470 0.88870 0.88679 1.20023 0.91137 0.95451 1.18117 1.18309 0.82766 0.88561 0.76053 1.90858 1.72601 1.30785 1.50538 1.45641 1.04791 1.09992 1.75078 1.21259 0.92374 0.86160 0.96836 0.93241 1.21651 0.92226 0.98142 1.02176 1.21934 1.01203 0.97213 0.96274 1.21572 0.86534 0.99266 0.93766 1.44355 1.15609 1.09616 1.64656 1.18762 0.92581 0.94802 1.32572 0.95134 1.26039 1.02916 0.95326 0.99041 1.70009 1.36585 1.04186 1.49901 0.85683 0.79610 0.78720 0.77049 1.19054 1.23959 1.17905 1.21268 0.92455 0.89031 0.95270 0.91291 0.91585 0.91056 0.92526 0.92043 0.91023 0.91408 0.88605 0.90723 0.87040 0.79434 0.80148 0.74594 0.88906 0.88959 0.88074 0.93555 0.93484 0.93223 0.92779 0.95804 0.93659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.91 71.98 0.71 -1.62 16 2 C -0.13 -3.12 6.30 30.59 0.19 -2.93 16 3 C 0.07 1.81 5.31 71.98 0.38 2.19 16 4 O -0.30 -10.54 8.22 -66.42 -0.55 -11.09 16 5 C 0.35 10.57 7.51 85.13 0.64 11.21 16 6 N -0.56 -13.46 9.11 -296.06 -2.70 -16.16 16 7 C 0.18 2.84 6.78 42.58 0.29 3.13 16 8 C -0.11 -0.78 10.16 71.24 0.72 -0.05 16 9 C -0.21 -2.34 9.71 22.32 0.22 -2.12 16 10 C 0.00 0.07 9.64 22.72 0.22 0.29 16 11 C -0.24 -6.50 5.90 -19.91 -0.12 -6.62 16 12 C 0.56 18.96 7.74 86.69 0.67 19.63 16 13 O -0.57 -26.29 14.86 16.81 0.25 -26.04 16 14 N -0.70 -19.04 5.03 -445.35 -2.24 -21.29 16 15 C 0.14 4.83 2.60 45.07 0.12 4.95 16 16 H 0.05 2.14 7.58 -2.39 -0.02 2.12 16 17 C -0.10 -2.65 5.36 30.62 0.16 -2.48 16 18 C -0.13 -3.99 6.08 30.68 0.19 -3.80 16 19 C 0.11 4.69 4.20 86.37 0.36 5.05 16 20 N -0.62 -31.03 2.77 -699.07 -1.94 -32.97 16 21 C -0.26 -15.99 10.03 84.03 0.84 -15.15 16 22 H 0.03 2.17 8.06 -2.91 -0.02 2.15 16 23 C -0.04 -2.40 5.23 84.86 0.44 -1.95 16 24 N -0.96 -63.73 13.97 21.65 0.30 -63.42 16 25 Si 0.96 47.51 24.35 68.60 1.67 49.18 16 26 H -0.26 -11.97 6.62 99.48 0.66 -11.31 16 27 H -0.31 -15.58 7.11 99.48 0.71 -14.87 16 28 H -0.25 -11.78 6.63 99.48 0.66 -11.12 16 29 C 0.15 6.32 6.09 86.36 0.53 6.85 16 30 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 35 H 0.07 1.70 8.11 -2.39 -0.02 1.68 16 36 H 0.07 1.67 8.10 -2.39 -0.02 1.65 16 37 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.11 0.16 8.07 -2.39 -0.02 0.15 16 40 H 0.19 0.43 8.06 -2.91 -0.02 0.40 16 41 H 0.18 1.26 6.52 -2.91 -0.02 1.24 16 42 H 0.42 6.94 6.70 -92.71 -0.62 6.32 16 43 H 0.09 1.86 8.14 -2.39 -0.02 1.85 16 44 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 46 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 47 H 0.05 1.78 7.08 -2.39 -0.02 1.76 16 48 H 0.05 2.30 4.50 -2.39 -0.01 2.29 16 49 H 0.26 16.37 8.31 -92.71 -0.77 15.60 16 50 H 0.02 1.20 7.93 -2.38 -0.02 1.18 16 51 H 0.05 1.74 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -90.79 403.94 1.58 -89.21 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 0.21 Total: 16.02 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: 6.57 Total: 16.56 kcal Atomic # 7 Polarization: -127.27 SS G_CDS: -6.57 Total: -133.84 kcal Atomic # 8 Polarization: -36.83 SS G_CDS: -0.30 Total: -37.13 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 1.67 Total: 49.18 kcal Total: -90.79 1.58 -89.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009033908.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.143 kcal (2) G-P(sol) polarization free energy of solvation -90.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds