Wall clock time and date at job start Wed Apr 1 2020 04:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47153 * 2 1 4 4 O 1.42903 * 109.47574 * 120.00104 * 2 1 3 5 5 C 1.35685 * 117.00060 * 89.99780 * 4 2 1 6 6 C 1.38893 * 119.61990 * 180.02562 * 5 4 2 7 7 C 1.39576 * 118.94278 * 179.97438 * 6 5 4 8 8 C 1.48163 * 120.89215 * 179.97438 * 7 6 5 9 9 O 1.21511 * 119.99866 * 0.02562 * 8 7 6 10 10 N 1.34772 * 119.99984 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99719 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.46982 * 180.02562 * 11 10 8 13 13 H 1.09003 * 109.70369 * 299.89821 * 12 11 10 14 14 C 1.52760 * 109.51093 * 179.78125 * 12 11 10 15 15 C 1.53039 * 109.38571 * 185.70193 * 14 12 11 16 16 C 1.53043 * 109.53683 * 61.24366 * 15 14 12 17 17 C 1.53199 * 109.31051 * 298.63147 * 16 15 14 18 18 N 1.46928 * 108.77147 * 54.63780 * 17 16 15 19 19 C 1.36934 * 120.63155 * 126.36865 * 18 17 16 20 20 H 1.08007 * 120.00176 * 211.18346 * 19 18 17 21 21 C 1.38814 * 120.00036 * 31.18195 * 19 18 17 22 22 N 1.31623 * 120.00236 * 196.93914 * 21 19 18 23 23 Si 1.86801 * 119.99891 * 16.94479 * 21 19 18 24 24 H 1.48494 * 109.46980 * 271.08091 * 23 21 19 25 25 H 1.48501 * 109.47027 * 31.08410 * 23 21 19 26 26 H 1.48505 * 109.47360 * 151.07921 * 23 21 19 27 27 C 1.39972 * 118.21780 * 0.27088 * 7 6 5 28 28 C 1.37980 * 119.13339 * 359.43601 * 27 7 6 29 29 N 1.31910 * 120.97431 * 0.58088 * 28 27 7 30 30 H 1.09005 * 109.46934 * 300.00002 * 1 2 3 31 31 H 1.08998 * 109.47220 * 60.00024 * 1 2 3 32 32 H 1.08999 * 109.47259 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46934 * 239.99998 * 2 1 3 34 34 H 1.08997 * 109.46976 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47037 * 300.00087 * 3 2 1 36 36 H 1.09000 * 109.46791 * 60.00360 * 3 2 1 37 37 H 1.07991 * 120.52936 * 359.97438 * 6 5 4 38 38 H 0.97003 * 120.00440 * 0.02562 * 10 8 7 39 39 H 1.08993 * 109.47596 * 60.00042 * 11 10 8 40 40 H 1.09008 * 109.46968 * 299.99556 * 11 10 8 41 41 H 1.09006 * 109.56551 * 65.66725 * 14 12 11 42 42 H 1.09005 * 109.38611 * 305.63070 * 14 12 11 43 43 H 1.08998 * 109.46534 * 301.22425 * 15 14 12 44 44 H 1.08994 * 109.45090 * 181.25112 * 15 14 12 45 45 H 1.08997 * 109.50236 * 178.68861 * 16 15 14 46 46 H 1.08994 * 109.52946 * 58.59917 * 16 15 14 47 47 H 1.08998 * 109.58855 * 294.85259 * 17 16 15 48 48 H 1.09004 * 109.70351 * 174.48829 * 17 16 15 49 49 H 0.97000 * 119.99944 * 180.02562 * 22 21 19 50 50 H 1.07998 * 120.43279 * 179.72271 * 27 7 6 51 51 H 1.07997 * 119.51680 * 180.27170 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.2118 -2.0110 1.0652 6 6 2.6738 -2.7202 2.1665 7 6 2.8796 -4.0954 2.0464 8 6 3.3720 -4.8939 3.1933 9 8 3.6019 -4.3523 4.2565 10 7 3.5650 -6.2208 3.0572 11 6 4.0513 -7.0103 4.1914 12 6 4.1832 -8.4761 3.7732 13 1 3.2115 -8.8576 3.4596 14 6 4.6954 -9.2993 4.9536 15 6 4.9615 -10.7348 4.4945 16 6 6.0345 -10.7324 3.4032 17 6 5.5331 -9.9255 2.2014 18 7 5.1380 -8.5874 2.6620 19 6 5.6541 -7.4653 2.0707 20 1 5.7949 -6.5652 2.6509 21 6 5.9963 -7.4846 0.7255 22 7 6.7847 -6.5525 0.2336 23 14 5.3379 -8.8334 -0.3865 24 1 6.2680 -9.9907 -0.3650 25 1 4.0009 -9.2638 0.0957 26 1 5.2211 -8.3179 -1.7743 27 6 2.6144 -4.6990 0.8117 28 6 2.1517 -3.9219 -0.2303 29 7 1.9688 -2.6242 -0.0802 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 2.8707 -2.2155 3.1007 38 1 3.3818 -6.6530 2.2084 39 1 3.3464 -6.9302 5.0188 40 1 5.0247 -6.6335 4.5056 41 1 3.9481 -9.3039 5.7472 42 1 5.6202 -8.8595 5.3273 43 1 4.0420 -11.1658 4.0986 44 1 5.3059 -11.3287 5.3410 45 1 6.2403 -11.7569 3.0931 46 1 6.9471 -10.2793 3.7905 47 1 4.6737 -10.4275 1.7570 48 1 6.3280 -9.8370 1.4607 49 1 7.0236 -6.5658 -0.7065 50 1 2.7655 -5.7600 0.6778 51 1 1.9408 -4.3820 -1.1843 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024754651.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:43 Heat of formation + Delta-G solvation = -35.702706 kcal Electronic energy + Delta-G solvation = -31495.541879 eV Core-core repulsion = 27395.146914 eV Total energy + Delta-G solvation = -4100.394966 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.94468 -40.78761 -39.62206 -38.94383 -35.91349 -34.86261 -34.27772 -33.85253 -32.58447 -32.25221 -31.12167 -28.17226 -27.96620 -26.76260 -25.30634 -24.40496 -24.29309 -22.88559 -22.16654 -21.40915 -20.86020 -19.78695 -18.48029 -18.18321 -17.62819 -17.31741 -16.84984 -16.78063 -16.64725 -16.50491 -15.68131 -15.45514 -15.33926 -15.25911 -15.14438 -14.84765 -14.76907 -14.73719 -14.29149 -14.11960 -13.73978 -13.61011 -13.28507 -13.23572 -13.18171 -12.99449 -12.93651 -12.85351 -12.50697 -12.27827 -11.94170 -11.93165 -11.78899 -11.67289 -11.53226 -11.41507 -11.18808 -11.10943 -11.02628 -10.67057 -10.60334 -9.94053 -9.59464 -8.77266 -8.04387 -5.42658 -0.39149 0.07549 1.37913 1.46655 1.56304 1.76666 1.86200 2.31191 2.49566 2.76738 3.10186 3.22510 3.34359 3.58540 3.86745 3.88441 3.90227 3.98709 4.03690 4.05962 4.09957 4.19858 4.28285 4.33095 4.44031 4.53122 4.57840 4.62915 4.67615 4.70456 4.77224 4.81991 4.85385 4.89066 4.89650 4.95494 5.00813 5.07649 5.18012 5.19086 5.26101 5.26891 5.31283 5.32736 5.33628 5.51232 5.64480 5.97979 6.20342 6.28574 6.55332 6.68817 6.98572 7.16026 7.70263 8.11470 9.13703 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015848 B = 0.002961 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.330802 B = 9454.053645 C =10519.407533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.070 3.930 3 C -0.146 4.146 4 O -0.312 6.312 5 C 0.314 3.686 6 C -0.152 4.152 7 C -0.055 4.055 8 C 0.550 3.450 9 O -0.581 6.581 10 N -0.677 5.677 11 C 0.136 3.864 12 C 0.162 3.838 13 H 0.058 0.942 14 C -0.125 4.125 15 C -0.103 4.103 16 C -0.132 4.132 17 C 0.118 3.882 18 N -0.616 5.616 19 C -0.236 4.236 20 H 0.056 0.944 21 C -0.021 4.021 22 N -0.954 5.954 23 Si 0.937 3.063 24 H -0.288 1.288 25 H -0.248 1.248 26 H -0.316 1.316 27 C -0.171 4.171 28 C 0.142 3.858 29 N -0.527 5.527 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.046 0.954 33 H 0.081 0.919 34 H 0.055 0.945 35 H 0.101 0.899 36 H 0.068 0.932 37 H 0.143 0.857 38 H 0.412 0.588 39 H 0.084 0.916 40 H 0.040 0.960 41 H 0.089 0.911 42 H 0.049 0.951 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.046 0.954 47 H 0.037 0.963 48 H 0.044 0.956 49 H 0.258 0.742 50 H 0.149 0.851 51 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.482 2.052 0.450 13.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.014 3.986 3 C -0.203 4.203 4 O -0.220 6.220 5 C 0.135 3.865 6 C -0.173 4.173 7 C -0.066 4.066 8 C 0.337 3.663 9 O -0.463 6.463 10 N -0.327 5.327 11 C 0.012 3.988 12 C 0.057 3.943 13 H 0.076 0.924 14 C -0.165 4.165 15 C -0.140 4.140 16 C -0.171 4.171 17 C -0.006 4.006 18 N -0.342 5.342 19 C -0.365 4.365 20 H 0.073 0.927 21 C -0.217 4.217 22 N -0.600 5.600 23 Si 0.767 3.233 24 H -0.216 1.216 25 H -0.172 1.172 26 H -0.246 1.246 27 C -0.192 4.192 28 C -0.013 4.013 29 N -0.252 5.252 30 H 0.083 0.917 31 H 0.112 0.888 32 H 0.066 0.934 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.120 0.880 36 H 0.087 0.913 37 H 0.161 0.839 38 H 0.251 0.749 39 H 0.102 0.898 40 H 0.059 0.941 41 H 0.107 0.893 42 H 0.068 0.932 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.093 0.907 46 H 0.065 0.935 47 H 0.055 0.945 48 H 0.062 0.938 49 H 0.067 0.933 50 H 0.167 0.833 51 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -13.530 3.139 0.619 13.903 hybrid contribution 0.842 -1.025 -0.675 1.488 sum -12.688 2.114 -0.056 12.863 Atomic orbital electron populations 1.22174 0.93629 1.02306 1.03753 1.22664 0.95471 0.93598 0.86835 1.21927 1.01646 0.92489 1.04272 1.86297 1.80358 1.15188 1.40146 1.19599 0.92204 0.85283 0.89378 1.21058 1.03673 0.92872 0.99740 1.20136 0.98141 0.93605 0.94696 1.18297 0.78092 0.82804 0.87137 1.90686 1.54356 1.71819 1.29479 1.45837 1.63590 1.06758 1.16481 1.21389 0.98522 0.90751 0.88130 1.20890 0.92581 0.92169 0.88655 0.92407 1.21844 1.01413 0.95972 0.97233 1.21362 0.98674 0.95946 0.98045 1.21942 0.98842 0.99550 0.96766 1.21456 0.97213 0.85758 0.96214 1.44523 1.49696 1.01297 1.38681 1.18745 1.34651 0.91746 0.91390 0.92679 1.25831 0.99212 0.98571 0.98055 1.69967 1.37763 1.38101 1.14146 0.86096 0.80409 0.79299 0.77496 1.21563 1.17219 1.24559 1.22350 1.01364 1.02766 0.92731 1.22880 0.91937 0.86994 0.99520 1.67207 1.21013 1.13158 1.23798 0.91743 0.88795 0.93448 0.90053 0.92571 0.87995 0.91277 0.83918 0.74923 0.89807 0.94115 0.89277 0.93236 0.91212 0.90442 0.90692 0.93517 0.94519 0.93763 0.93344 0.83331 0.78412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 9.53 71.98 0.69 -2.26 16 2 C 0.07 1.55 3.11 30.59 0.10 1.65 16 3 C -0.15 -2.46 9.56 71.98 0.69 -1.77 16 4 O -0.31 -9.16 9.76 -90.04 -0.88 -10.04 16 5 C 0.31 10.14 7.45 84.80 0.63 10.77 16 6 C -0.15 -5.35 9.61 22.75 0.22 -5.14 16 7 C -0.06 -2.01 5.91 -19.90 -0.12 -2.13 16 8 C 0.55 22.27 7.80 86.88 0.68 22.95 16 9 O -0.58 -26.55 16.44 -3.75 -0.06 -26.61 16 10 N -0.68 -25.56 3.80 -465.67 -1.77 -27.33 16 11 C 0.14 4.83 4.42 86.38 0.38 5.21 16 12 C 0.16 5.31 2.99 44.83 0.13 5.45 16 13 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 14 C -0.13 -3.36 5.34 30.53 0.16 -3.20 16 15 C -0.10 -2.49 5.89 30.62 0.18 -2.31 16 16 C -0.13 -3.96 6.08 30.68 0.19 -3.78 16 17 C 0.12 4.45 4.20 86.36 0.36 4.81 16 18 N -0.62 -25.10 2.72 -675.99 -1.84 -26.94 16 19 C -0.24 -11.79 7.44 84.03 0.63 -11.16 16 20 H 0.06 3.17 6.04 -2.91 -0.02 3.15 16 21 C -0.02 -1.13 5.27 84.86 0.45 -0.68 16 22 N -0.95 -56.40 13.97 21.65 0.30 -56.10 16 23 Si 0.94 41.97 24.32 68.60 1.67 43.64 16 24 H -0.29 -12.81 6.52 99.48 0.65 -12.16 16 25 H -0.25 -10.06 6.74 99.48 0.67 -9.39 16 26 H -0.32 -14.71 7.11 99.48 0.71 -14.00 16 27 C -0.17 -5.44 9.61 22.63 0.22 -5.22 16 28 C 0.14 3.94 11.17 84.62 0.94 4.88 16 29 N -0.53 -15.74 8.61 -309.14 -2.66 -18.41 16 30 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.08 1.94 6.98 -2.38 -0.02 1.92 16 34 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.14 5.11 7.74 -2.92 -0.02 5.09 16 38 H 0.41 15.28 5.53 -92.71 -0.51 14.76 16 39 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 40 H 0.04 1.71 7.42 -2.38 -0.02 1.69 16 41 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 42 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 43 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.04 1.30 7.04 -2.39 -0.02 1.29 16 48 H 0.04 1.92 4.64 -2.38 -0.01 1.91 16 49 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 50 H 0.15 4.50 6.53 -2.91 -0.02 4.48 16 51 H 0.20 3.97 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -68.03 397.65 1.61 -66.43 By element: Atomic # 1 Polarization: 36.97 SS G_CDS: 0.32 Total: 37.29 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: 6.52 Total: 18.07 kcal Atomic # 7 Polarization: -122.81 SS G_CDS: -5.97 Total: -128.77 kcal Atomic # 8 Polarization: -35.71 SS G_CDS: -0.94 Total: -36.65 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 1.67 Total: 43.64 kcal Total: -68.03 1.61 -66.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024754651.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.723 kcal (2) G-P(sol) polarization free energy of solvation -68.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds