Wall clock time and date at job start Wed Apr 1 2020 04:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 O 1.42895 * 109.47036 * 239.99739 * 2 1 3 5 5 C 1.35495 * 117.00342 * 270.00098 * 4 2 1 6 6 C 1.39166 * 119.52828 * 179.72534 * 5 4 2 7 7 C 1.37955 * 119.26707 * 179.79142 * 6 5 4 8 8 C 1.40292 * 118.35336 * 0.47709 * 7 6 5 9 9 C 1.47611 * 120.49577 * 179.76796 * 8 7 6 10 10 O 1.21581 * 120.00192 * 359.97438 * 9 8 7 11 11 N 1.34785 * 119.99777 * 179.97438 * 9 8 7 12 12 C 1.46501 * 119.99836 * 180.02562 * 11 9 8 13 13 C 1.53007 * 109.46743 * 274.99755 * 12 11 9 14 14 C 1.52998 * 109.46858 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.47202 * 59.99978 * 14 13 12 16 16 N 1.46499 * 109.47078 * 179.97438 * 15 14 13 17 17 C 1.36932 * 120.00180 * 274.99820 * 16 15 14 18 18 H 1.08000 * 120.00000 * 0.02562 * 17 16 15 19 19 C 1.38818 * 120.00099 * 180.02562 * 17 16 15 20 20 N 1.31611 * 119.99926 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99682 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47707 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46955 * 119.99920 * 21 19 17 24 24 H 1.48505 * 109.46972 * 239.99694 * 21 19 17 25 25 C 1.52999 * 109.47270 * 300.00018 * 15 14 13 26 26 C 1.52997 * 109.47367 * 59.99725 * 25 15 14 27 27 C 1.39518 * 119.00342 * 359.74893 * 8 7 6 28 28 N 1.31673 * 120.62708 * 0.02562 * 27 8 7 29 29 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 32 32 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 33 33 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 34 34 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 36 36 H 1.08003 * 120.36850 * 0.02562 * 6 5 4 37 37 H 1.07993 * 120.82702 * 180.22377 * 7 6 5 38 38 H 0.96994 * 119.99648 * 359.97438 * 11 9 8 39 39 H 1.08999 * 109.47214 * 34.99640 * 12 11 9 40 40 H 1.09005 * 109.46752 * 300.00072 * 13 12 11 41 41 H 1.08993 * 109.47159 * 59.99724 * 13 12 11 42 42 H 1.08999 * 109.47028 * 299.99841 * 14 13 12 43 43 H 1.08999 * 109.46723 * 179.97438 * 14 13 12 44 44 H 1.09005 * 109.47317 * 59.99527 * 15 14 13 45 45 H 0.96999 * 119.99920 * 95.00168 * 16 15 14 46 46 H 0.97001 * 120.00312 * 180.02562 * 20 19 17 47 47 H 1.08999 * 109.46969 * 300.00142 * 25 15 14 48 48 H 1.08996 * 109.47459 * 179.97438 * 25 15 14 49 49 H 1.09005 * 109.47400 * 179.97438 * 26 25 15 50 50 H 1.09005 * 109.47078 * 60.00578 * 26 25 15 51 51 H 1.08002 * 119.68624 * 179.97438 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.2114 -2.0092 -1.0654 6 6 2.6693 -2.7187 -2.1715 7 6 2.8804 -4.0775 -2.0611 8 6 2.6128 -4.6955 -0.8303 9 6 2.8171 -6.1475 -0.6611 10 8 3.2197 -6.8174 -1.5924 11 7 2.5573 -6.7308 0.5259 12 6 2.7606 -8.1718 0.6940 13 6 1.5143 -8.9215 0.2188 14 6 1.7263 -10.4265 0.3950 15 6 1.9759 -10.7369 1.8722 16 7 2.1783 -12.1780 2.0409 17 6 1.0993 -13.0088 2.1841 18 1 0.0990 -12.6018 2.1723 19 6 1.2911 -14.3743 2.3446 20 7 2.5101 -14.8703 2.3585 21 14 -0.1809 -15.5077 2.5392 22 1 -1.4313 -14.7083 2.4888 23 1 -0.1861 -16.5055 1.4394 24 1 -0.0954 -16.2103 3.8447 25 6 3.2221 -9.9872 2.3474 26 6 3.0101 -8.4823 2.1712 27 6 2.1510 -3.9169 0.2313 28 7 1.9678 -2.6214 0.0831 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1301 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 2.8610 -2.2105 -3.1051 37 1 3.2388 -4.6521 -2.9023 38 1 2.2364 -6.1963 1.2689 39 1 3.6216 -8.4885 0.1053 40 1 0.6533 -8.6048 0.8075 41 1 1.3362 -8.7000 -0.8334 42 1 2.5874 -10.7434 -0.1934 43 1 0.8383 -10.9605 0.0569 44 1 1.1148 -10.4199 2.4606 45 1 3.0767 -12.5436 2.0513 46 1 2.6442 -15.8245 2.4703 47 1 4.0831 -10.3041 1.7590 48 1 3.3997 -10.2079 3.3999 49 1 3.8978 -7.9481 2.5102 50 1 2.1491 -8.1652 2.7597 51 1 1.9411 -4.3813 1.1835 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026504212.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:25 Heat of formation + Delta-G solvation = -45.149433 kcal Electronic energy + Delta-G solvation = -29672.403659 eV Core-core repulsion = 25571.599053 eV Total energy + Delta-G solvation = -4100.804606 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.30557 -40.02251 -38.62559 -37.74843 -34.94658 -33.84535 -33.10967 -32.94359 -31.22885 -30.41555 -30.17520 -27.77458 -27.34603 -24.73341 -24.47414 -23.48150 -22.37516 -21.73638 -21.18761 -20.64083 -19.55295 -19.04129 -17.97040 -17.40264 -16.96852 -16.23573 -15.97709 -15.41069 -15.26407 -14.99311 -14.91458 -14.70401 -14.29438 -13.92358 -13.82289 -13.63799 -13.56105 -13.42835 -13.11299 -13.02919 -12.82502 -12.80243 -12.53629 -12.40685 -12.03310 -11.81226 -11.45104 -11.43964 -11.26978 -11.04902 -10.82737 -10.77060 -10.68722 -10.40788 -10.36614 -10.14180 -10.09913 -9.85790 -9.75403 -9.57981 -9.11921 -8.89829 -8.83745 -6.92599 -5.74427 -3.02721 0.33817 0.75311 2.48453 2.63532 2.98161 3.44403 3.47716 3.50093 3.52238 3.67873 4.33192 4.34214 4.43624 4.46643 4.57393 4.60909 4.66212 4.76060 4.89436 5.03899 5.05691 5.12529 5.19733 5.24693 5.27577 5.30679 5.43445 5.52758 5.60583 5.61005 5.66532 5.68785 5.69773 5.73355 5.85136 5.88107 5.91712 6.03319 6.23784 6.24884 6.30339 6.48190 6.56970 6.64659 6.73456 6.74849 7.00087 7.16409 7.26962 7.36932 7.72845 8.07103 8.44471 9.55538 10.14356 10.48774 11.48425 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025189 B = 0.001648 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.339228 B =16991.000910 C =17305.744954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.079 3.921 3 C -0.151 4.151 4 O -0.298 6.298 5 C 0.344 3.656 6 C -0.198 4.198 7 C 0.018 3.982 8 C -0.225 4.225 9 C 0.566 3.434 10 O -0.534 6.534 11 N -0.720 5.720 12 C 0.146 3.854 13 C -0.124 4.124 14 C -0.132 4.132 15 C 0.177 3.823 16 N -0.725 5.725 17 C -0.236 4.236 18 H 0.070 0.930 19 C -0.015 4.015 20 N -0.933 5.933 21 Si 0.905 3.095 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.120 4.120 26 C -0.119 4.119 27 C 0.179 3.821 28 N -0.544 5.544 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.148 0.852 37 H 0.155 0.845 38 H 0.395 0.605 39 H 0.090 0.910 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.063 0.937 44 H 0.046 0.954 45 H 0.383 0.617 46 H 0.254 0.746 47 H 0.062 0.938 48 H 0.068 0.932 49 H 0.063 0.937 50 H 0.066 0.934 51 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.077 33.488 -4.394 33.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.023 3.977 3 C -0.209 4.209 4 O -0.205 6.205 5 C 0.166 3.834 6 C -0.219 4.219 7 C -0.008 4.008 8 C -0.231 4.231 9 C 0.352 3.648 10 O -0.411 6.411 11 N -0.371 5.371 12 C 0.042 3.958 13 C -0.163 4.163 14 C -0.173 4.173 15 C 0.067 3.933 16 N -0.366 5.366 17 C -0.368 4.368 18 H 0.088 0.912 19 C -0.211 4.211 20 N -0.582 5.582 21 Si 0.736 3.264 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.159 4.159 26 C -0.158 4.158 27 C 0.021 3.979 28 N -0.267 5.267 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.110 0.890 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.166 0.834 37 H 0.173 0.827 38 H 0.230 0.770 39 H 0.108 0.892 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.064 0.936 45 H 0.217 0.783 46 H 0.064 0.936 47 H 0.081 0.919 48 H 0.087 0.913 49 H 0.082 0.918 50 H 0.085 0.915 51 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -0.072 33.609 -4.548 33.915 hybrid contribution -0.515 -1.049 -0.064 1.170 sum -0.588 32.560 -4.612 32.891 Atomic orbital electron populations 1.22224 0.94606 1.03053 1.02784 1.22431 0.94597 0.92877 0.87769 1.21919 1.02057 0.93720 1.03154 1.86282 1.79347 1.15814 1.39024 1.20052 0.89072 0.84718 0.89591 1.21072 1.07444 0.94046 0.99331 1.21560 0.89621 0.92896 0.96723 1.20872 1.10263 0.95244 0.96682 1.17873 0.77596 0.86272 0.83047 1.90809 1.45826 1.64638 1.39864 1.46080 1.67833 1.10228 1.12953 1.21159 0.99509 0.77814 0.97274 1.21903 0.96724 0.96848 1.00838 1.22225 1.02126 0.92457 1.00504 1.20243 0.94855 0.85505 0.92706 1.42432 1.06751 1.00377 1.87010 1.19293 0.87600 0.88544 1.41330 0.91171 1.24734 0.96346 0.96882 1.03096 1.69667 1.18988 1.12137 1.57366 0.86146 0.81927 0.81054 0.77251 1.20604 1.21921 1.21937 1.21750 0.99751 0.92540 1.01881 1.21759 1.01689 0.98011 0.94323 1.22618 0.89949 0.87582 0.97765 1.67257 1.22613 1.12297 1.24542 0.91914 0.91889 0.90884 0.89004 0.90311 0.91748 0.91555 0.83375 0.82722 0.76986 0.89227 0.92277 0.92307 0.92456 0.91785 0.93603 0.78311 0.93615 0.91926 0.91327 0.91809 0.91520 0.82007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.00 9.53 37.16 0.35 -0.65 16 2 C 0.08 0.53 3.10 -26.73 -0.08 0.44 16 3 C -0.15 -0.71 9.56 37.16 0.36 -0.35 16 4 O -0.30 -2.56 9.75 -18.18 -0.18 -2.74 16 5 C 0.34 3.14 7.46 -16.96 -0.13 3.01 16 6 C -0.20 -1.62 10.02 -39.34 -0.39 -2.02 16 7 C 0.02 0.16 9.70 -38.91 -0.38 -0.22 16 8 C -0.22 -2.18 5.89 -104.82 -0.62 -2.80 16 9 C 0.57 6.82 7.74 -12.43 -0.10 6.72 16 10 O -0.53 -8.51 16.08 5.29 0.09 -8.42 16 11 N -0.72 -7.43 5.03 -54.82 -0.28 -7.70 16 12 C 0.15 1.86 2.46 -67.93 -0.17 1.69 16 13 C -0.12 -1.80 5.49 -26.73 -0.15 -1.94 16 14 C -0.13 -2.37 5.50 -26.73 -0.15 -2.52 16 15 C 0.18 3.40 2.77 -67.93 -0.19 3.21 16 16 N -0.73 -18.00 5.12 -53.43 -0.27 -18.28 16 17 C -0.24 -6.54 9.93 -15.06 -0.15 -6.69 16 18 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 19 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 20 N -0.93 -28.25 13.06 55.49 0.72 -27.53 16 21 Si 0.90 22.46 29.55 -169.99 -5.02 17.43 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 C -0.12 -1.88 5.39 -26.73 -0.14 -2.02 16 26 C -0.12 -1.41 5.39 -26.73 -0.14 -1.55 16 27 C 0.18 1.46 10.71 -17.14 -0.18 1.28 16 28 N -0.54 -4.92 8.61 -12.97 -0.11 -5.03 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.66 6.97 -51.93 -0.36 0.30 16 33 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.15 0.91 8.06 -52.48 -0.42 0.49 16 37 H 0.16 1.32 7.73 -52.49 -0.41 0.91 16 38 H 0.40 2.83 6.65 -40.82 -0.27 2.56 16 39 H 0.09 1.33 7.58 -51.93 -0.39 0.94 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 45 H 0.38 10.15 7.80 -40.82 -0.32 9.83 16 46 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 47 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 49 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 50 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 51 H 0.16 0.86 6.41 -52.49 -0.34 0.53 16 LS Contribution 414.07 15.07 6.24 6.24 Total: -1.00 -33.31 414.07 -9.56 -42.87 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -8.39 Total: 8.08 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -2.35 Total: -4.92 kcal Atomic # 7 Polarization: -58.60 SS G_CDS: 0.06 Total: -58.54 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: -0.09 Total: -11.16 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.31 -9.56 -42.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026504212.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.284 kcal (2) G-P(sol) polarization free energy of solvation -33.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds