Wall clock time and date at job start Wed Apr 1 2020 04:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 O 1.42895 * 109.47036 * 239.99739 * 2 1 3 5 5 C 1.35495 * 117.00342 * 270.00098 * 4 2 1 6 6 C 1.39166 * 119.52828 * 179.72534 * 5 4 2 7 7 C 1.37955 * 119.26707 * 179.79142 * 6 5 4 8 8 C 1.40292 * 118.35336 * 0.47709 * 7 6 5 9 9 C 1.47611 * 120.49577 * 179.76796 * 8 7 6 10 10 O 1.21581 * 120.00192 * 359.97438 * 9 8 7 11 11 N 1.34785 * 119.99777 * 179.97438 * 9 8 7 12 12 C 1.46501 * 119.99836 * 180.02562 * 11 9 8 13 13 C 1.53007 * 109.46743 * 274.99755 * 12 11 9 14 14 C 1.52998 * 109.46858 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.47202 * 59.99978 * 14 13 12 16 16 N 1.46499 * 109.47078 * 179.97438 * 15 14 13 17 17 C 1.36932 * 120.00180 * 274.99820 * 16 15 14 18 18 H 1.08000 * 120.00000 * 0.02562 * 17 16 15 19 19 C 1.38818 * 120.00099 * 180.02562 * 17 16 15 20 20 N 1.31611 * 119.99926 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99682 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47707 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46955 * 119.99920 * 21 19 17 24 24 H 1.48505 * 109.46972 * 239.99694 * 21 19 17 25 25 C 1.52999 * 109.47270 * 300.00018 * 15 14 13 26 26 C 1.52997 * 109.47367 * 59.99725 * 25 15 14 27 27 C 1.39518 * 119.00342 * 359.74893 * 8 7 6 28 28 N 1.31673 * 120.62708 * 0.02562 * 27 8 7 29 29 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 32 32 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 33 33 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 34 34 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 36 36 H 1.08003 * 120.36850 * 0.02562 * 6 5 4 37 37 H 1.07993 * 120.82702 * 180.22377 * 7 6 5 38 38 H 0.96994 * 119.99648 * 359.97438 * 11 9 8 39 39 H 1.08999 * 109.47214 * 34.99640 * 12 11 9 40 40 H 1.09005 * 109.46752 * 300.00072 * 13 12 11 41 41 H 1.08993 * 109.47159 * 59.99724 * 13 12 11 42 42 H 1.08999 * 109.47028 * 299.99841 * 14 13 12 43 43 H 1.08999 * 109.46723 * 179.97438 * 14 13 12 44 44 H 1.09005 * 109.47317 * 59.99527 * 15 14 13 45 45 H 0.96999 * 119.99920 * 95.00168 * 16 15 14 46 46 H 0.97001 * 120.00312 * 180.02562 * 20 19 17 47 47 H 1.08999 * 109.46969 * 300.00142 * 25 15 14 48 48 H 1.08996 * 109.47459 * 179.97438 * 25 15 14 49 49 H 1.09005 * 109.47400 * 179.97438 * 26 25 15 50 50 H 1.09005 * 109.47078 * 60.00578 * 26 25 15 51 51 H 1.08002 * 119.68624 * 179.97438 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.2114 -2.0092 -1.0654 6 6 2.6693 -2.7187 -2.1715 7 6 2.8804 -4.0775 -2.0611 8 6 2.6128 -4.6955 -0.8303 9 6 2.8171 -6.1475 -0.6611 10 8 3.2197 -6.8174 -1.5924 11 7 2.5573 -6.7308 0.5259 12 6 2.7606 -8.1718 0.6940 13 6 1.5143 -8.9215 0.2188 14 6 1.7263 -10.4265 0.3950 15 6 1.9759 -10.7369 1.8722 16 7 2.1783 -12.1780 2.0409 17 6 1.0993 -13.0088 2.1841 18 1 0.0990 -12.6018 2.1723 19 6 1.2911 -14.3743 2.3446 20 7 2.5101 -14.8703 2.3585 21 14 -0.1809 -15.5077 2.5392 22 1 -1.4313 -14.7083 2.4888 23 1 -0.1861 -16.5055 1.4394 24 1 -0.0954 -16.2103 3.8447 25 6 3.2221 -9.9872 2.3474 26 6 3.0101 -8.4823 2.1712 27 6 2.1510 -3.9169 0.2313 28 7 1.9678 -2.6214 0.0831 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1301 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 2.8610 -2.2105 -3.1051 37 1 3.2388 -4.6521 -2.9023 38 1 2.2364 -6.1963 1.2689 39 1 3.6216 -8.4885 0.1053 40 1 0.6533 -8.6048 0.8075 41 1 1.3362 -8.7000 -0.8334 42 1 2.5874 -10.7434 -0.1934 43 1 0.8383 -10.9605 0.0569 44 1 1.1148 -10.4199 2.4606 45 1 3.0767 -12.5436 2.0513 46 1 2.6442 -15.8245 2.4703 47 1 4.0831 -10.3041 1.7590 48 1 3.3997 -10.2079 3.3999 49 1 3.8978 -7.9481 2.5102 50 1 2.1491 -8.1652 2.7597 51 1 1.9411 -4.3813 1.1835 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026504212.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:24 Heat of formation + Delta-G solvation = -67.665663 kcal Electronic energy + Delta-G solvation = -29673.380036 eV Core-core repulsion = 25571.599053 eV Total energy + Delta-G solvation = -4101.780983 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.00302 -40.94034 -39.53281 -38.79600 -36.39737 -34.78668 -34.25444 -33.62775 -32.65449 -31.67001 -31.32125 -28.82846 -28.16353 -25.89297 -25.14128 -24.99714 -23.62111 -22.67327 -22.04069 -21.64188 -20.92310 -19.66972 -19.21683 -18.63826 -18.10726 -17.06291 -16.84594 -16.73135 -16.18146 -16.08638 -15.74909 -15.49250 -15.41220 -15.33134 -15.01382 -14.86532 -14.57885 -14.34806 -14.03354 -14.01125 -13.74261 -13.43288 -13.28701 -13.17966 -13.13978 -13.06391 -12.88207 -12.84246 -12.42459 -12.29060 -12.09305 -12.00545 -11.92928 -11.77078 -11.65967 -11.46509 -11.23634 -11.16465 -11.08098 -10.83586 -10.62012 -10.10924 -9.60795 -8.97589 -7.92454 -5.20154 -0.37607 0.10803 1.47423 1.48169 1.57889 1.78742 1.90349 2.07866 2.57534 2.74788 3.08463 3.40788 3.60117 3.76482 3.78438 3.84750 3.89825 3.92109 3.96234 4.02131 4.06119 4.28019 4.31511 4.39772 4.42589 4.52235 4.56571 4.62321 4.64214 4.68622 4.71410 4.83415 4.85918 4.87711 4.92954 5.00986 5.03919 5.15081 5.16773 5.21279 5.26602 5.28027 5.30608 5.31241 5.47367 5.54284 5.57718 5.66647 6.14526 6.30658 6.52026 6.62786 7.19703 7.36084 8.14415 8.36293 9.31479 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025189 B = 0.001648 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.339228 B =16991.000910 C =17305.744954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.073 3.927 3 C -0.148 4.148 4 O -0.306 6.306 5 C 0.337 3.663 6 C -0.198 4.198 7 C 0.012 3.988 8 C -0.237 4.237 9 C 0.567 3.433 10 O -0.580 6.580 11 N -0.704 5.704 12 C 0.154 3.846 13 C -0.113 4.113 14 C -0.123 4.123 15 C 0.171 3.829 16 N -0.739 5.739 17 C -0.235 4.235 18 H 0.076 0.924 19 C -0.079 4.079 20 N -0.971 5.971 21 Si 0.969 3.031 22 H -0.266 1.266 23 H -0.297 1.297 24 H -0.293 1.293 25 C -0.113 4.113 26 C -0.106 4.106 27 C 0.188 3.812 28 N -0.551 5.551 29 H 0.063 0.937 30 H 0.047 0.953 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.166 0.834 37 H 0.154 0.846 38 H 0.415 0.585 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.048 0.952 42 H 0.038 0.962 43 H 0.040 0.960 44 H 0.049 0.951 45 H 0.371 0.629 46 H 0.249 0.751 47 H 0.052 0.948 48 H 0.067 0.933 49 H 0.090 0.910 50 H 0.090 0.910 51 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.040 36.354 -3.220 36.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.017 3.983 3 C -0.205 4.205 4 O -0.213 6.213 5 C 0.159 3.841 6 C -0.218 4.218 7 C -0.013 4.013 8 C -0.243 4.243 9 C 0.355 3.645 10 O -0.460 6.460 11 N -0.355 5.355 12 C 0.049 3.951 13 C -0.152 4.152 14 C -0.164 4.164 15 C 0.063 3.937 16 N -0.378 5.378 17 C -0.367 4.367 18 H 0.094 0.906 19 C -0.271 4.271 20 N -0.622 5.622 21 Si 0.799 3.201 22 H -0.190 1.190 23 H -0.224 1.224 24 H -0.220 1.220 25 C -0.152 4.152 26 C -0.144 4.144 27 C 0.030 3.970 28 N -0.274 5.274 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.115 0.885 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.183 0.817 37 H 0.172 0.828 38 H 0.253 0.747 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.066 0.934 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.067 0.933 45 H 0.203 0.797 46 H 0.058 0.942 47 H 0.071 0.929 48 H 0.086 0.914 49 H 0.109 0.891 50 H 0.109 0.891 51 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -1.226 36.562 -3.351 36.736 hybrid contribution -0.178 -1.820 -0.462 1.886 sum -1.404 34.742 -3.814 34.979 Atomic orbital electron populations 1.22201 0.94086 1.02298 1.03683 1.22641 0.95065 0.93651 0.86921 1.21929 1.01900 0.92512 1.04124 1.86281 1.79290 1.15619 1.40076 1.20291 0.88870 0.85087 0.89892 1.21226 1.06992 0.93664 0.99954 1.21651 0.89593 0.93339 0.96738 1.20727 1.11974 0.93912 0.97663 1.18189 0.76589 0.87018 0.82667 1.90793 1.48015 1.65799 1.41430 1.45811 1.67250 1.09211 1.13271 1.20878 0.97573 0.78997 0.97643 1.21770 0.98453 0.94260 1.00702 1.22027 1.00157 0.94994 0.99213 1.20509 0.96856 0.83006 0.93287 1.42681 1.05510 1.02605 1.87043 1.19675 0.88547 0.89143 1.39307 0.90645 1.25527 0.98848 0.98526 1.04150 1.69821 1.21003 1.11979 1.59420 0.85123 0.79445 0.78928 0.76605 1.19003 1.22447 1.22030 1.21637 0.97344 0.94897 1.01355 1.21665 1.04036 0.95077 0.93648 1.23014 0.88522 0.87169 0.98315 1.67337 1.22946 1.12544 1.24600 0.91830 0.93396 0.89192 0.89544 0.88501 0.91997 0.91416 0.81655 0.82835 0.74670 0.91496 0.90422 0.93361 0.94283 0.94157 0.93329 0.79747 0.94187 0.92907 0.91395 0.89148 0.89139 0.79054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.68 9.53 71.98 0.69 -0.99 16 2 C 0.07 0.85 3.10 30.60 0.09 0.94 16 3 C -0.15 -1.09 9.56 71.98 0.69 -0.40 16 4 O -0.31 -4.83 9.75 -87.96 -0.86 -5.69 16 5 C 0.34 5.65 7.46 84.83 0.63 6.28 16 6 C -0.20 -3.00 10.02 22.43 0.22 -2.77 16 7 C 0.01 0.21 9.70 22.70 0.22 0.43 16 8 C -0.24 -4.24 5.89 -20.00 -0.12 -4.36 16 9 C 0.57 12.96 7.74 86.72 0.67 13.63 16 10 O -0.58 -18.53 16.08 -3.97 -0.06 -18.60 16 11 N -0.70 -12.72 5.03 -445.61 -2.24 -14.96 16 12 C 0.15 3.64 2.46 44.99 0.11 3.75 16 13 C -0.11 -3.14 5.49 30.60 0.17 -2.97 16 14 C -0.12 -4.47 5.50 30.59 0.17 -4.30 16 15 C 0.17 6.53 2.77 44.99 0.12 6.65 16 16 N -0.74 -37.27 5.12 -322.94 -1.65 -38.93 16 17 C -0.23 -13.07 9.93 84.04 0.83 -12.23 16 18 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 19 C -0.08 -4.55 5.50 84.86 0.47 -4.09 16 20 N -0.97 -60.14 13.06 21.65 0.28 -59.86 16 21 Si 0.97 46.60 29.55 68.60 2.03 48.63 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 23 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 24 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 25 C -0.11 -3.40 5.39 30.59 0.16 -3.24 16 26 C -0.11 -2.17 5.39 30.59 0.16 -2.00 16 27 C 0.19 2.60 10.71 85.03 0.91 3.51 16 28 N -0.55 -8.86 8.61 -307.83 -2.65 -11.51 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.09 1.10 6.97 -2.39 -0.02 1.08 16 33 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.17 1.81 8.06 -2.91 -0.02 1.78 16 37 H 0.15 2.62 7.73 -2.91 -0.02 2.60 16 38 H 0.41 4.28 6.65 -92.71 -0.62 3.66 16 39 H 0.07 1.95 7.58 -2.39 -0.02 1.93 16 40 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 41 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.05 1.84 8.08 -2.38 -0.02 1.82 16 45 H 0.37 20.24 7.80 -92.71 -0.72 19.51 16 46 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 47 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 48 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 49 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 50 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 51 H 0.19 1.29 6.41 -2.91 -0.02 1.28 16 Total: -1.00 -73.92 414.07 0.65 -73.27 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: -0.40 Total: 29.81 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: 6.21 Total: -2.16 kcal Atomic # 7 Polarization: -119.00 SS G_CDS: -6.26 Total: -125.26 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.92 Total: -24.28 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -73.92 0.65 -73.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026504212.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.604 kcal (2) G-P(sol) polarization free energy of solvation -73.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds