Wall clock time and date at job start Wed Apr 1 2020 05:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.45949 * 2 1 4 4 C 1.53108 * 109.46829 * 119.98102 * 2 1 3 5 5 C 1.53431 * 109.72978 * 189.87223 * 4 2 1 6 6 C 1.50602 * 108.31167 * 309.98648 * 5 4 2 7 7 O 1.33186 * 129.60287 * 196.80407 * 6 5 4 8 8 N 1.21432 * 111.56784 * 179.49277 * 7 6 5 9 9 C 1.31498 * 111.52679 * 0.53437 * 8 7 6 10 10 C 1.48331 * 127.15386 * 179.80498 * 9 8 7 11 11 O 1.21496 * 119.99477 * 179.68818 * 10 9 8 12 12 N 1.34768 * 120.00090 * 359.68508 * 10 9 8 13 13 C 1.46500 * 120.00056 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.47249 * 154.99998 * 13 12 10 15 15 C 1.52999 * 109.46626 * 60.00049 * 14 13 12 16 16 C 1.52997 * 109.46991 * 60.00378 * 15 14 13 17 17 N 1.46510 * 109.47071 * 179.97438 * 16 15 14 18 18 C 1.36936 * 119.99911 * 274.99622 * 17 16 15 19 19 H 1.08004 * 119.99844 * 0.02562 * 18 17 16 20 20 C 1.38806 * 120.00080 * 179.97438 * 18 17 16 21 21 N 1.31625 * 120.00101 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00007 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47268 * 89.99392 * 22 20 18 24 24 H 1.48506 * 109.47041 * 209.99672 * 22 20 18 25 25 H 1.48497 * 109.46702 * 329.99330 * 22 20 18 26 26 C 1.52996 * 109.47131 * 299.99311 * 16 15 14 27 27 C 1.52997 * 109.47473 * 275.00296 * 13 12 10 28 28 C 1.35382 * 123.76027 * 16.65820 * 6 5 4 29 29 C 1.50064 * 124.94061 * 0.30359 * 28 6 5 30 30 H 1.09004 * 109.46920 * 300.01626 * 1 2 3 31 31 H 1.09001 * 109.47230 * 60.01427 * 1 2 3 32 32 H 1.08996 * 109.47115 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.42804 * 69.79257 * 4 2 1 34 34 H 1.09004 * 109.38609 * 309.92452 * 4 2 1 35 35 H 1.09003 * 109.69456 * 190.28446 * 5 4 2 36 36 H 1.09000 * 109.69771 * 69.69297 * 5 4 2 37 37 H 0.97007 * 120.00298 * 0.02562 * 12 10 9 38 38 H 1.09001 * 109.46596 * 35.00394 * 13 12 10 39 39 H 1.08993 * 109.46955 * 180.02562 * 14 13 12 40 40 H 1.09000 * 109.47050 * 300.00351 * 14 13 12 41 41 H 1.09002 * 109.46719 * 180.02562 * 15 14 13 42 42 H 1.08993 * 109.47839 * 299.99931 * 15 14 13 43 43 H 1.09000 * 109.47611 * 59.99933 * 16 15 14 44 44 H 0.96994 * 119.99768 * 94.99808 * 17 16 15 45 45 H 0.96997 * 119.99816 * 180.02562 * 21 20 18 46 46 H 1.08996 * 109.47452 * 300.00000 * 26 16 15 47 47 H 1.09000 * 109.47054 * 180.02562 * 26 16 15 48 48 H 1.09002 * 109.47153 * 59.99757 * 27 13 12 49 49 H 1.08996 * 109.46952 * 179.97438 * 27 13 12 50 50 H 1.08999 * 109.70634 * 135.73113 * 29 28 6 51 51 H 1.08995 * 109.71201 * 256.36481 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0403 -0.7214 1.2504 5 6 3.5544 -0.5139 1.3864 6 6 4.1983 -0.8491 0.0668 7 8 5.4743 -1.1079 -0.2138 8 7 5.6319 -1.3490 -1.3935 9 6 4.4990 -1.2742 -2.0568 10 6 4.2945 -1.4982 -3.5088 11 8 3.1823 -1.4000 -3.9878 12 7 5.3424 -1.8106 -4.2965 13 6 5.1403 -2.0324 -5.7305 14 6 6.4453 -1.7528 -6.4787 15 6 7.5384 -2.6927 -5.9662 16 6 7.1155 -4.1439 -6.2033 17 7 8.1624 -5.0439 -5.7132 18 6 9.2249 -5.3602 -6.5170 19 1 9.2914 -4.9458 -7.5121 20 6 10.2171 -6.2126 -6.0524 21 7 11.2387 -6.5162 -6.8249 22 14 10.1025 -6.9287 -4.3310 23 1 9.3647 -8.2165 -4.3787 24 1 11.4696 -7.1609 -3.7994 25 1 9.3823 -5.9780 -3.4464 26 6 5.8105 -4.4235 -5.4551 27 6 4.7174 -3.4835 -5.9676 28 6 3.5181 -0.9428 -1.1000 29 6 2.0416 -0.7235 -1.2540 30 1 -0.3633 0.5141 0.8899 31 1 -0.3634 0.5136 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 1.8264 -1.7869 1.1669 34 1 1.5387 -0.3187 2.1304 35 1 3.9467 -1.1698 2.1636 36 1 3.7614 0.5251 1.6427 37 1 6.2303 -1.8893 -3.9140 38 1 4.3616 -1.3627 -6.0955 39 1 6.2948 -1.9174 -7.5456 40 1 6.7466 -0.7189 -6.3098 41 1 8.4682 -2.4932 -6.4990 42 1 7.6888 -2.5278 -4.8994 43 1 6.9652 -4.3089 -7.2702 44 1 8.1028 -5.4158 -4.8193 45 1 11.9318 -7.1121 -6.5004 46 1 5.9608 -4.2585 -4.3883 47 1 5.5095 -5.4574 -5.6237 48 1 3.7877 -3.6827 -5.4345 49 1 4.5667 -3.6483 -7.0344 50 1 1.8510 -0.1110 -2.1353 51 1 1.5361 -1.6837 -1.3566 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026586834.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:12 Heat of formation + Delta-G solvation = 11.409347 kcal Electronic energy + Delta-G solvation = -31200.656894 eV Core-core repulsion = 27102.304861 eV Total energy + Delta-G solvation = -4098.352034 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -45.33744 -40.19129 -38.62663 -38.01191 -34.85039 -34.21916 -32.87316 -32.70490 -31.11647 -30.55176 -30.52853 -28.20288 -27.51636 -24.94092 -24.04044 -23.28720 -22.36197 -22.33835 -21.13571 -20.79298 -19.85161 -19.05270 -18.14131 -17.88425 -17.48614 -16.82663 -15.68107 -15.61002 -15.41390 -15.05797 -14.76796 -14.54930 -14.29138 -14.12282 -13.84672 -13.72623 -13.59242 -13.49711 -13.14168 -12.88192 -12.69207 -12.56005 -12.43927 -12.20154 -11.98020 -11.83274 -11.68644 -11.42229 -11.24114 -11.13599 -10.95628 -10.95109 -10.87632 -10.54710 -10.47515 -10.28488 -10.26514 -10.08039 -9.75048 -9.56143 -9.39497 -9.08289 -8.88530 -7.26020 -5.76524 -3.11694 0.89934 1.41139 2.57232 2.88372 3.03986 3.38274 3.41860 3.45897 3.76269 4.12887 4.18554 4.28537 4.55504 4.59853 4.60094 4.75523 4.86187 4.88320 4.95561 4.96728 5.02617 5.14892 5.19717 5.29134 5.34088 5.36664 5.41945 5.43842 5.46556 5.53329 5.57211 5.58509 5.62942 5.75467 5.78884 5.82096 5.90634 5.91775 5.93807 5.95254 6.21225 6.26619 6.28494 6.38864 6.48997 6.59552 6.85631 6.99613 7.32435 7.77373 7.99824 8.00453 8.42941 9.21514 9.94502 10.14570 11.41856 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014953 B = 0.002573 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.076781 B =10881.156132 C =12032.235789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 H 0.076 0.924 4 C -0.115 4.115 5 C -0.035 4.035 6 C -0.040 4.040 7 O 0.129 5.871 8 N -0.333 5.333 9 C -0.017 4.017 10 C 0.599 3.401 11 O -0.525 6.525 12 N -0.701 5.701 13 C 0.147 3.853 14 C -0.125 4.125 15 C -0.138 4.138 16 C 0.183 3.817 17 N -0.749 5.749 18 C -0.241 4.241 19 H 0.090 0.910 20 C 0.003 3.997 21 N -0.934 5.934 22 Si 0.883 3.117 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.277 1.277 26 C -0.127 4.127 27 C -0.124 4.124 28 C -0.153 4.153 29 C -0.038 4.038 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.408 0.592 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.050 0.950 43 H 0.057 0.943 44 H 0.360 0.640 45 H 0.259 0.741 46 H 0.054 0.946 47 H 0.064 0.936 48 H 0.063 0.937 49 H 0.076 0.924 50 H 0.089 0.911 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.139 16.199 16.242 31.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 H 0.094 0.906 4 C -0.152 4.152 5 C -0.073 4.073 6 C -0.104 4.104 7 O 0.056 5.944 8 N -0.035 5.035 9 C -0.175 4.175 10 C 0.382 3.618 11 O -0.400 6.400 12 N -0.353 5.353 13 C 0.043 3.957 14 C -0.164 4.164 15 C -0.178 4.178 16 C 0.074 3.926 17 N -0.391 5.391 18 C -0.371 4.371 19 H 0.108 0.892 20 C -0.192 4.192 21 N -0.582 5.582 22 Si 0.714 3.286 23 H -0.212 1.212 24 H -0.218 1.218 25 H -0.204 1.204 26 C -0.165 4.165 27 C -0.163 4.163 28 C -0.158 4.158 29 C -0.076 4.076 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.245 0.755 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.192 0.808 45 H 0.069 0.931 46 H 0.073 0.927 47 H 0.083 0.917 48 H 0.082 0.918 49 H 0.094 0.906 50 H 0.107 0.893 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -21.495 15.928 15.231 30.785 hybrid contribution 0.038 -0.557 1.439 1.544 sum -21.457 15.371 16.670 31.218 Atomic orbital electron populations 1.21804 0.94220 1.02257 1.02080 1.21324 0.96289 0.99825 0.94013 0.90605 1.21737 0.92901 1.01931 0.98637 1.20267 0.94414 1.03241 0.89363 1.24158 0.83487 1.03797 0.99008 1.84701 1.26924 1.62500 1.20312 1.74626 1.22605 1.16149 0.90103 1.23087 0.90273 1.07001 0.97182 1.16835 0.85039 0.77185 0.82704 1.90765 1.23507 1.51921 1.73843 1.46084 1.10867 1.69032 1.09343 1.21106 0.98608 0.97221 0.78750 1.21854 0.94237 0.99901 1.00410 1.22260 0.98115 0.97058 1.00379 1.20194 0.86835 0.88446 0.97168 1.42813 1.24838 1.55575 1.15873 1.19075 0.97569 1.22896 0.97563 0.89197 1.24670 0.96932 1.00001 0.97617 1.69702 1.12260 1.40089 1.36184 0.86562 0.76836 0.79335 0.85869 1.21156 1.21787 1.20372 1.21818 0.95505 0.99158 1.00017 1.21869 0.98582 0.93957 1.01939 1.20646 0.98640 1.05863 0.90602 1.20058 0.87153 1.01758 0.98601 0.92367 0.92220 0.92351 0.90927 0.89937 0.88736 0.88670 0.75469 0.89452 0.90113 0.91910 0.90996 0.93153 0.92510 0.80766 0.93107 0.92721 0.91716 0.91809 0.90575 0.89257 0.89811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.16 37.16 0.34 -0.37 16 2 C -0.10 -0.56 2.71 -90.28 -0.24 -0.81 16 3 H 0.08 0.44 8.12 -51.93 -0.42 0.02 16 4 C -0.11 -0.53 5.18 -26.45 -0.14 -0.67 16 5 C -0.03 -0.18 6.31 -27.71 -0.17 -0.35 16 6 C -0.04 -0.38 7.38 -35.37 -0.26 -0.64 16 7 O 0.13 1.51 11.18 19.20 0.21 1.72 16 8 N -0.33 -4.55 11.89 33.29 0.40 -4.16 16 9 C -0.02 -0.23 7.19 -82.82 -0.60 -0.83 16 10 C 0.60 8.67 7.81 -12.11 -0.09 8.57 16 11 O -0.53 -8.35 15.75 5.37 0.08 -8.27 16 12 N -0.70 -9.60 4.23 -54.60 -0.23 -9.83 16 13 C 0.15 1.91 2.78 -67.93 -0.19 1.73 16 14 C -0.13 -1.63 5.61 -26.73 -0.15 -1.78 16 15 C -0.14 -2.29 5.33 -26.73 -0.14 -2.43 16 16 C 0.18 3.43 2.77 -67.93 -0.19 3.25 16 17 N -0.75 -17.69 4.93 -53.42 -0.26 -17.95 16 18 C -0.24 -6.77 10.41 -15.06 -0.16 -6.93 16 19 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16 20 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 21 N -0.93 -29.49 13.97 55.49 0.78 -28.71 16 22 Si 0.88 22.48 27.74 -169.99 -4.71 17.76 16 23 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.29 -7.52 7.11 56.52 0.40 -7.11 16 25 H -0.28 -6.71 6.52 56.52 0.37 -6.35 16 26 C -0.13 -2.04 5.23 -26.73 -0.14 -2.18 16 27 C -0.12 -1.69 5.60 -26.73 -0.15 -1.84 16 28 C -0.15 -1.68 6.04 -104.91 -0.63 -2.31 16 29 C -0.04 -0.34 4.97 -27.90 -0.14 -0.48 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.37 8.12 -51.93 -0.42 -0.05 16 34 H 0.08 0.23 8.11 -51.93 -0.42 -0.19 16 35 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.41 5.70 6.64 -40.82 -0.27 5.43 16 38 H 0.09 1.12 7.58 -51.93 -0.39 0.73 16 39 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 42 H 0.05 0.84 6.50 -51.93 -0.34 0.50 16 43 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 44 H 0.36 8.51 5.66 -40.82 -0.23 8.28 16 45 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 46 H 0.05 0.91 7.60 -51.93 -0.39 0.51 16 47 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 49 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 50 H 0.09 0.90 7.84 -51.93 -0.41 0.49 16 51 H 0.08 0.77 8.12 -51.93 -0.42 0.35 16 LS Contribution 398.70 15.07 6.01 6.01 Total: -1.00 -33.18 398.70 -9.26 -42.44 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -8.38 Total: 9.06 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -3.15 Total: -8.08 kcal Atomic # 7 Polarization: -61.33 SS G_CDS: 0.68 Total: -60.65 kcal Atomic # 8 Polarization: -6.85 SS G_CDS: 0.30 Total: -6.55 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.71 Total: 17.76 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.18 -9.26 -42.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026586834.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.849 kcal (2) G-P(sol) polarization free energy of solvation -33.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds