Wall clock time and date at job start Wed Apr 1 2020 05:23:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09004 * 109.45949 * 2 1
4 4 C 1.53108 * 109.46829 * 119.98102 * 2 1 3
5 5 C 1.53431 * 109.72978 * 189.87223 * 4 2 1
6 6 C 1.50602 * 108.31167 * 309.98648 * 5 4 2
7 7 O 1.33186 * 129.60287 * 196.80407 * 6 5 4
8 8 N 1.21432 * 111.56784 * 179.49277 * 7 6 5
9 9 C 1.31498 * 111.52679 * 0.53437 * 8 7 6
10 10 C 1.48331 * 127.15386 * 179.80498 * 9 8 7
11 11 O 1.21496 * 119.99477 * 179.68818 * 10 9 8
12 12 N 1.34768 * 120.00090 * 359.68508 * 10 9 8
13 13 C 1.46500 * 120.00056 * 179.97438 * 12 10 9
14 14 C 1.53006 * 109.47249 * 154.99998 * 13 12 10
15 15 C 1.52999 * 109.46626 * 60.00049 * 14 13 12
16 16 C 1.52997 * 109.46991 * 60.00378 * 15 14 13
17 17 N 1.46510 * 109.47071 * 179.97438 * 16 15 14
18 18 C 1.36936 * 119.99911 * 274.99622 * 17 16 15
19 19 H 1.08004 * 119.99844 * 0.02562 * 18 17 16
20 20 C 1.38806 * 120.00080 * 179.97438 * 18 17 16
21 21 N 1.31625 * 120.00101 * 180.02562 * 20 18 17
22 22 Si 1.86800 * 120.00007 * 0.02562 * 20 18 17
23 23 H 1.48499 * 109.47268 * 89.99392 * 22 20 18
24 24 H 1.48506 * 109.47041 * 209.99672 * 22 20 18
25 25 H 1.48497 * 109.46702 * 329.99330 * 22 20 18
26 26 C 1.52996 * 109.47131 * 299.99311 * 16 15 14
27 27 C 1.52997 * 109.47473 * 275.00296 * 13 12 10
28 28 C 1.35382 * 123.76027 * 16.65820 * 6 5 4
29 29 C 1.50064 * 124.94061 * 0.30359 * 28 6 5
30 30 H 1.09004 * 109.46920 * 300.01626 * 1 2 3
31 31 H 1.09001 * 109.47230 * 60.01427 * 1 2 3
32 32 H 1.08996 * 109.47115 * 180.02562 * 1 2 3
33 33 H 1.08999 * 109.42804 * 69.79257 * 4 2 1
34 34 H 1.09004 * 109.38609 * 309.92452 * 4 2 1
35 35 H 1.09003 * 109.69456 * 190.28446 * 5 4 2
36 36 H 1.09000 * 109.69771 * 69.69297 * 5 4 2
37 37 H 0.97007 * 120.00298 * 0.02562 * 12 10 9
38 38 H 1.09001 * 109.46596 * 35.00394 * 13 12 10
39 39 H 1.08993 * 109.46955 * 180.02562 * 14 13 12
40 40 H 1.09000 * 109.47050 * 300.00351 * 14 13 12
41 41 H 1.09002 * 109.46719 * 180.02562 * 15 14 13
42 42 H 1.08993 * 109.47839 * 299.99931 * 15 14 13
43 43 H 1.09000 * 109.47611 * 59.99933 * 16 15 14
44 44 H 0.96994 * 119.99768 * 94.99808 * 17 16 15
45 45 H 0.96997 * 119.99816 * 180.02562 * 21 20 18
46 46 H 1.08996 * 109.47452 * 300.00000 * 26 16 15
47 47 H 1.09000 * 109.47054 * 180.02562 * 26 16 15
48 48 H 1.09002 * 109.47153 * 59.99757 * 27 13 12
49 49 H 1.08996 * 109.46952 * 179.97438 * 27 13 12
50 50 H 1.08999 * 109.70634 * 135.73113 * 29 28 6
51 51 H 1.08995 * 109.71201 * 256.36481 * 29 28 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8932 1.0278 0.0000
4 6 2.0403 -0.7214 1.2504
5 6 3.5544 -0.5139 1.3864
6 6 4.1983 -0.8491 0.0668
7 8 5.4743 -1.1079 -0.2138
8 7 5.6319 -1.3490 -1.3935
9 6 4.4990 -1.2742 -2.0568
10 6 4.2945 -1.4982 -3.5088
11 8 3.1823 -1.4000 -3.9878
12 7 5.3424 -1.8106 -4.2965
13 6 5.1403 -2.0324 -5.7305
14 6 6.4453 -1.7528 -6.4787
15 6 7.5384 -2.6927 -5.9662
16 6 7.1155 -4.1439 -6.2033
17 7 8.1624 -5.0439 -5.7132
18 6 9.2249 -5.3602 -6.5170
19 1 9.2914 -4.9458 -7.5121
20 6 10.2171 -6.2126 -6.0524
21 7 11.2387 -6.5162 -6.8249
22 14 10.1025 -6.9287 -4.3310
23 1 9.3647 -8.2165 -4.3787
24 1 11.4696 -7.1609 -3.7994
25 1 9.3823 -5.9780 -3.4464
26 6 5.8105 -4.4235 -5.4551
27 6 4.7174 -3.4835 -5.9676
28 6 3.5181 -0.9428 -1.1000
29 6 2.0416 -0.7235 -1.2540
30 1 -0.3633 0.5141 0.8899
31 1 -0.3634 0.5136 -0.8901
32 1 -0.3633 -1.0276 0.0005
33 1 1.8264 -1.7869 1.1669
34 1 1.5387 -0.3187 2.1304
35 1 3.9467 -1.1698 2.1636
36 1 3.7614 0.5251 1.6427
37 1 6.2303 -1.8893 -3.9140
38 1 4.3616 -1.3627 -6.0955
39 1 6.2948 -1.9174 -7.5456
40 1 6.7466 -0.7189 -6.3098
41 1 8.4682 -2.4932 -6.4990
42 1 7.6888 -2.5278 -4.8994
43 1 6.9652 -4.3089 -7.2702
44 1 8.1028 -5.4158 -4.8193
45 1 11.9318 -7.1121 -6.5004
46 1 5.9608 -4.2585 -4.3883
47 1 5.5095 -5.4574 -5.6237
48 1 3.7877 -3.6827 -5.4345
49 1 4.5667 -3.6483 -7.0344
50 1 1.8510 -0.1110 -2.1353
51 1 1.5361 -1.6837 -1.3566
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001026586834.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:23:11
Heat of formation + Delta-G solvation = -8.854492 kcal
Electronic energy + Delta-G solvation = -31201.535600 eV
Core-core repulsion = 27102.304861 eV
Total energy + Delta-G solvation = -4099.230740 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-46.23244 -41.34748 -39.47510 -39.00943 -36.48358 -35.15220 -34.34548 -33.40230
-32.84881 -31.79563 -31.28721 -29.71447 -28.17168 -26.03373 -25.15068 -24.49029
-23.62465 -23.06755 -22.47117 -21.95189 -20.63664 -20.34928 -19.49811 -19.01588
-18.66799 -17.78619 -16.97097 -16.85023 -16.51624 -16.20395 -16.04546 -15.45041
-15.30726 -15.09767 -14.84057 -14.83167 -14.67874 -14.40775 -14.34072 -14.19226
-13.88402 -13.72146 -13.39302 -13.17031 -13.06706 -12.93630 -12.85607 -12.67726
-12.30039 -12.29078 -12.13181 -11.90419 -11.85341 -11.73735 -11.67629 -11.64442
-11.55887 -11.31225 -11.23056 -11.12127 -10.93467 -10.20845 -10.14134 -9.31994
-8.03732 -5.36200 -0.03629 0.59109 1.34684 1.36720 1.43988 1.75283
1.95011 1.98405 2.45807 2.82430 3.27136 3.43586 3.47290 3.56818
3.72345 3.83086 3.85116 3.92066 4.01560 4.12137 4.16580 4.19723
4.25215 4.30147 4.45616 4.51216 4.53002 4.54561 4.59466 4.68758
4.74141 4.77625 4.86333 4.92671 4.96157 4.97817 5.01218 5.05936
5.12568 5.15411 5.17186 5.21511 5.31906 5.36033 5.40335 5.43888
5.51882 5.55179 5.76929 6.21042 6.22363 6.82204 6.97659 7.06501
7.83823 8.01886 9.17825
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.014953 B = 0.002573 C = 0.002327
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1872.076781 B =10881.156132 C =12032.235789
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.091 4.091
3 H 0.079 0.921
4 C -0.111 4.111
5 C -0.035 4.035
6 C -0.024 4.024
7 O 0.128 5.872
8 N -0.358 5.358
9 C -0.041 4.041
10 C 0.598 3.402
11 O -0.544 6.544
12 N -0.699 5.699
13 C 0.150 3.850
14 C -0.113 4.113
15 C -0.129 4.129
16 C 0.176 3.824
17 N -0.754 5.754
18 C -0.223 4.223
19 H 0.060 0.940
20 C -0.065 4.065
21 N -0.983 5.983
22 Si 0.952 3.048
23 H -0.280 1.280
24 H -0.296 1.296
25 H -0.258 1.258
26 C -0.116 4.116
27 C -0.117 4.117
28 C -0.171 4.171
29 C -0.036 4.036
30 H 0.075 0.925
31 H 0.052 0.948
32 H 0.056 0.944
33 H 0.066 0.934
34 H 0.111 0.889
35 H 0.115 0.885
36 H 0.119 0.881
37 H 0.407 0.593
38 H 0.097 0.903
39 H 0.095 0.905
40 H 0.078 0.922
41 H 0.047 0.953
42 H 0.049 0.951
43 H 0.049 0.951
44 H 0.361 0.639
45 H 0.257 0.743
46 H 0.050 0.950
47 H 0.060 0.940
48 H 0.063 0.937
49 H 0.092 0.908
50 H 0.071 0.929
51 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -24.383 17.465 19.045 35.529
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.110 4.110
3 H 0.098 0.902
4 C -0.149 4.149
5 C -0.072 4.072
6 C -0.088 4.088
7 O 0.055 5.945
8 N -0.060 5.060
9 C -0.197 4.197
10 C 0.382 3.618
11 O -0.421 6.421
12 N -0.351 5.351
13 C 0.046 3.954
14 C -0.152 4.152
15 C -0.169 4.169
16 C 0.069 3.931
17 N -0.396 5.396
18 C -0.354 4.354
19 H 0.078 0.922
20 C -0.257 4.257
21 N -0.634 5.634
22 Si 0.780 3.220
23 H -0.206 1.206
24 H -0.223 1.223
25 H -0.183 1.183
26 C -0.154 4.154
27 C -0.156 4.156
28 C -0.176 4.176
29 C -0.074 4.074
30 H 0.094 0.906
31 H 0.071 0.929
32 H 0.075 0.925
33 H 0.085 0.915
34 H 0.129 0.871
35 H 0.133 0.867
36 H 0.136 0.864
37 H 0.244 0.756
38 H 0.115 0.885
39 H 0.113 0.887
40 H 0.097 0.903
41 H 0.066 0.934
42 H 0.067 0.933
43 H 0.067 0.933
44 H 0.194 0.806
45 H 0.066 0.934
46 H 0.069 0.931
47 H 0.079 0.921
48 H 0.082 0.918
49 H 0.110 0.890
50 H 0.090 0.910
51 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -23.788 17.229 18.034 34.466
hybrid contribution 0.684 -0.886 0.524 1.236
sum -23.104 16.343 18.558 33.842
Atomic orbital electron populations
1.21792 0.93424 1.02335 1.02609 1.21313 0.96891 0.99678 0.93082
0.90217 1.21772 0.92574 1.01625 0.98895 1.20608 0.94282 1.05007
0.87339 1.24964 0.82237 1.01310 1.00297 1.84661 1.28184 1.62133
1.19547 1.74603 1.23073 1.17446 0.90923 1.23173 0.91302 1.08187
0.97078 1.17000 0.84799 0.76726 0.83251 1.90744 1.24112 1.52897
1.74371 1.46109 1.10668 1.68764 1.09548 1.21127 0.98708 0.97018
0.78514 1.21771 0.92720 0.99662 1.01027 1.22061 0.98355 0.96306
1.00197 1.20442 0.86895 0.88781 0.96987 1.42867 1.24738 1.56548
1.15460 1.19035 0.98343 1.21308 0.96723 0.92213 1.25450 0.96926
1.01328 1.01954 1.69875 1.13487 1.41639 1.38435 0.85455 0.76633
0.78850 0.81085 1.20622 1.22295 1.18267 1.21682 0.94654 0.99690
0.99375 1.21821 0.97359 0.93549 1.02830 1.20957 0.99411 1.06586
0.90686 1.20080 0.86108 1.01438 0.99734 0.90628 0.92921 0.92511
0.91471 0.87071 0.86695 0.86350 0.75628 0.88459 0.88695 0.90335
0.93391 0.93256 0.93295 0.80587 0.93448 0.93131 0.92109 0.91837
0.88959 0.91027 0.90581
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.10 9.16 71.98 0.66 -0.44 16
2 C -0.09 -0.87 2.71 -10.57 -0.03 -0.90 16
3 H 0.08 0.72 8.12 -2.38 -0.02 0.70 16
4 C -0.11 -0.65 5.18 30.78 0.16 -0.49 16
5 C -0.03 -0.24 6.31 29.96 0.19 -0.05 16
6 C -0.02 -0.40 7.38 24.99 0.18 -0.21 16
7 O 0.13 2.85 11.18 78.72 0.88 3.73 16
8 N -0.36 -9.66 11.89 -48.94 -0.58 -10.25 16
9 C -0.04 -1.09 7.19 42.55 0.31 -0.78 16
10 C 0.60 17.14 7.81 86.93 0.68 17.82 16
11 O -0.54 -17.20 15.75 -3.70 -0.06 -17.26 16
12 N -0.70 -18.58 4.23 -444.95 -1.88 -20.46 16
13 C 0.15 3.66 2.78 44.99 0.13 3.79 16
14 C -0.11 -2.76 5.61 30.60 0.17 -2.58 16
15 C -0.13 -4.23 5.33 30.59 0.16 -4.06 16
16 C 0.18 6.56 2.77 44.99 0.12 6.68 16
17 N -0.75 -35.51 4.93 -322.93 -1.59 -37.10 16
18 C -0.22 -12.77 10.41 84.03 0.87 -11.90 16
19 H 0.06 3.72 8.06 -2.91 -0.02 3.70 16
20 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16
21 N -0.98 -63.78 13.97 21.65 0.30 -63.47 16
22 Si 0.95 46.83 27.74 68.60 1.90 48.73 16
23 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16
24 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16
25 H -0.26 -11.68 6.52 99.48 0.65 -11.03 16
26 C -0.12 -3.60 5.23 30.59 0.16 -3.44 16
27 C -0.12 -2.98 5.60 30.59 0.17 -2.81 16
28 C -0.17 -3.65 6.04 -20.05 -0.12 -3.77 16
29 C -0.04 -0.62 4.97 29.83 0.15 -0.48 16
30 H 0.07 0.33 8.14 -2.38 -0.02 0.31 16
31 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16
32 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16
33 H 0.07 0.50 8.12 -2.39 -0.02 0.48 16
34 H 0.11 0.10 8.11 -2.38 -0.02 0.08 16
35 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16
36 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16
37 H 0.41 11.12 6.64 -92.70 -0.62 10.50 16
38 H 0.10 2.29 7.58 -2.39 -0.02 2.27 16
39 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16
40 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16
41 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16
42 H 0.05 1.62 6.50 -2.39 -0.02 1.60 16
43 H 0.05 1.90 8.08 -2.39 -0.02 1.88 16
44 H 0.36 16.73 5.66 -92.71 -0.52 16.20 16
45 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16
46 H 0.05 1.62 7.60 -2.39 -0.02 1.60 16
47 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16
48 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16
49 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16
50 H 0.07 1.46 7.84 -2.39 -0.02 1.45 16
51 H 0.08 1.39 8.12 -2.39 -0.02 1.37 16
Total: -1.00 -74.00 398.70 3.15 -70.85
By element:
Atomic # 1 Polarization: 32.56 SS G_CDS: -0.25 Total: 32.31 kcal
Atomic # 6 Polarization: -11.51 SS G_CDS: 4.43 Total: -7.07 kcal
Atomic # 7 Polarization: -127.54 SS G_CDS: -3.75 Total: -131.29 kcal
Atomic # 8 Polarization: -14.35 SS G_CDS: 0.82 Total: -13.53 kcal
Atomic # 14 Polarization: 46.83 SS G_CDS: 1.90 Total: 48.73 kcal
Total: -74.00 3.15 -70.85 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001026586834.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 61.997 kcal
(2) G-P(sol) polarization free energy of solvation -74.004 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.007 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.152 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.851 kcal
(6) G-S(sol) free energy of system = (1) + (5) -8.854 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds