Wall clock time and date at job start Wed Apr 1 2020 05:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.45949 * 2 1 4 4 C 1.53108 * 109.46829 * 119.98102 * 2 1 3 5 5 C 1.53431 * 109.72978 * 189.87223 * 4 2 1 6 6 C 1.50602 * 108.31167 * 309.98648 * 5 4 2 7 7 O 1.33186 * 129.60287 * 196.80407 * 6 5 4 8 8 N 1.21432 * 111.56784 * 179.49277 * 7 6 5 9 9 C 1.31498 * 111.52679 * 0.53437 * 8 7 6 10 10 C 1.48331 * 127.15386 * 179.80498 * 9 8 7 11 11 O 1.21496 * 119.99477 * 179.68818 * 10 9 8 12 12 N 1.34768 * 120.00090 * 359.68508 * 10 9 8 13 13 C 1.46500 * 120.00056 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.47249 * 154.99998 * 13 12 10 15 15 C 1.52999 * 109.46626 * 60.00049 * 14 13 12 16 16 C 1.52997 * 109.46991 * 60.00378 * 15 14 13 17 17 N 1.46510 * 109.47071 * 179.97438 * 16 15 14 18 18 C 1.36936 * 119.99911 * 274.99622 * 17 16 15 19 19 H 1.08004 * 119.99844 * 0.02562 * 18 17 16 20 20 C 1.38806 * 120.00080 * 179.97438 * 18 17 16 21 21 N 1.31625 * 120.00101 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00007 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47268 * 89.99392 * 22 20 18 24 24 H 1.48506 * 109.47041 * 209.99672 * 22 20 18 25 25 H 1.48497 * 109.46702 * 329.99330 * 22 20 18 26 26 C 1.52996 * 109.47131 * 299.99311 * 16 15 14 27 27 C 1.52997 * 109.47473 * 275.00296 * 13 12 10 28 28 C 1.35382 * 123.76027 * 16.65820 * 6 5 4 29 29 C 1.50064 * 124.94061 * 0.30359 * 28 6 5 30 30 H 1.09004 * 109.46920 * 300.01626 * 1 2 3 31 31 H 1.09001 * 109.47230 * 60.01427 * 1 2 3 32 32 H 1.08996 * 109.47115 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.42804 * 69.79257 * 4 2 1 34 34 H 1.09004 * 109.38609 * 309.92452 * 4 2 1 35 35 H 1.09003 * 109.69456 * 190.28446 * 5 4 2 36 36 H 1.09000 * 109.69771 * 69.69297 * 5 4 2 37 37 H 0.97007 * 120.00298 * 0.02562 * 12 10 9 38 38 H 1.09001 * 109.46596 * 35.00394 * 13 12 10 39 39 H 1.08993 * 109.46955 * 180.02562 * 14 13 12 40 40 H 1.09000 * 109.47050 * 300.00351 * 14 13 12 41 41 H 1.09002 * 109.46719 * 180.02562 * 15 14 13 42 42 H 1.08993 * 109.47839 * 299.99931 * 15 14 13 43 43 H 1.09000 * 109.47611 * 59.99933 * 16 15 14 44 44 H 0.96994 * 119.99768 * 94.99808 * 17 16 15 45 45 H 0.96997 * 119.99816 * 180.02562 * 21 20 18 46 46 H 1.08996 * 109.47452 * 300.00000 * 26 16 15 47 47 H 1.09000 * 109.47054 * 180.02562 * 26 16 15 48 48 H 1.09002 * 109.47153 * 59.99757 * 27 13 12 49 49 H 1.08996 * 109.46952 * 179.97438 * 27 13 12 50 50 H 1.08999 * 109.70634 * 135.73113 * 29 28 6 51 51 H 1.08995 * 109.71201 * 256.36481 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0403 -0.7214 1.2504 5 6 3.5544 -0.5139 1.3864 6 6 4.1983 -0.8491 0.0668 7 8 5.4743 -1.1079 -0.2138 8 7 5.6319 -1.3490 -1.3935 9 6 4.4990 -1.2742 -2.0568 10 6 4.2945 -1.4982 -3.5088 11 8 3.1823 -1.4000 -3.9878 12 7 5.3424 -1.8106 -4.2965 13 6 5.1403 -2.0324 -5.7305 14 6 6.4453 -1.7528 -6.4787 15 6 7.5384 -2.6927 -5.9662 16 6 7.1155 -4.1439 -6.2033 17 7 8.1624 -5.0439 -5.7132 18 6 9.2249 -5.3602 -6.5170 19 1 9.2914 -4.9458 -7.5121 20 6 10.2171 -6.2126 -6.0524 21 7 11.2387 -6.5162 -6.8249 22 14 10.1025 -6.9287 -4.3310 23 1 9.3647 -8.2165 -4.3787 24 1 11.4696 -7.1609 -3.7994 25 1 9.3823 -5.9780 -3.4464 26 6 5.8105 -4.4235 -5.4551 27 6 4.7174 -3.4835 -5.9676 28 6 3.5181 -0.9428 -1.1000 29 6 2.0416 -0.7235 -1.2540 30 1 -0.3633 0.5141 0.8899 31 1 -0.3634 0.5136 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 1.8264 -1.7869 1.1669 34 1 1.5387 -0.3187 2.1304 35 1 3.9467 -1.1698 2.1636 36 1 3.7614 0.5251 1.6427 37 1 6.2303 -1.8893 -3.9140 38 1 4.3616 -1.3627 -6.0955 39 1 6.2948 -1.9174 -7.5456 40 1 6.7466 -0.7189 -6.3098 41 1 8.4682 -2.4932 -6.4990 42 1 7.6888 -2.5278 -4.8994 43 1 6.9652 -4.3089 -7.2702 44 1 8.1028 -5.4158 -4.8193 45 1 11.9318 -7.1121 -6.5004 46 1 5.9608 -4.2585 -4.3883 47 1 5.5095 -5.4574 -5.6237 48 1 3.7877 -3.6827 -5.4345 49 1 4.5667 -3.6483 -7.0344 50 1 1.8510 -0.1110 -2.1353 51 1 1.5361 -1.6837 -1.3566 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026586834.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:11 Heat of formation + Delta-G solvation = -8.854492 kcal Electronic energy + Delta-G solvation = -31201.535600 eV Core-core repulsion = 27102.304861 eV Total energy + Delta-G solvation = -4099.230740 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -46.23244 -41.34748 -39.47510 -39.00943 -36.48358 -35.15220 -34.34548 -33.40230 -32.84881 -31.79563 -31.28721 -29.71447 -28.17168 -26.03373 -25.15068 -24.49029 -23.62465 -23.06755 -22.47117 -21.95189 -20.63664 -20.34928 -19.49811 -19.01588 -18.66799 -17.78619 -16.97097 -16.85023 -16.51624 -16.20395 -16.04546 -15.45041 -15.30726 -15.09767 -14.84057 -14.83167 -14.67874 -14.40775 -14.34072 -14.19226 -13.88402 -13.72146 -13.39302 -13.17031 -13.06706 -12.93630 -12.85607 -12.67726 -12.30039 -12.29078 -12.13181 -11.90419 -11.85341 -11.73735 -11.67629 -11.64442 -11.55887 -11.31225 -11.23056 -11.12127 -10.93467 -10.20845 -10.14134 -9.31994 -8.03732 -5.36200 -0.03629 0.59109 1.34684 1.36720 1.43988 1.75283 1.95011 1.98405 2.45807 2.82430 3.27136 3.43586 3.47290 3.56818 3.72345 3.83086 3.85116 3.92066 4.01560 4.12137 4.16580 4.19723 4.25215 4.30147 4.45616 4.51216 4.53002 4.54561 4.59466 4.68758 4.74141 4.77625 4.86333 4.92671 4.96157 4.97817 5.01218 5.05936 5.12568 5.15411 5.17186 5.21511 5.31906 5.36033 5.40335 5.43888 5.51882 5.55179 5.76929 6.21042 6.22363 6.82204 6.97659 7.06501 7.83823 8.01886 9.17825 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014953 B = 0.002573 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.076781 B =10881.156132 C =12032.235789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 H 0.079 0.921 4 C -0.111 4.111 5 C -0.035 4.035 6 C -0.024 4.024 7 O 0.128 5.872 8 N -0.358 5.358 9 C -0.041 4.041 10 C 0.598 3.402 11 O -0.544 6.544 12 N -0.699 5.699 13 C 0.150 3.850 14 C -0.113 4.113 15 C -0.129 4.129 16 C 0.176 3.824 17 N -0.754 5.754 18 C -0.223 4.223 19 H 0.060 0.940 20 C -0.065 4.065 21 N -0.983 5.983 22 Si 0.952 3.048 23 H -0.280 1.280 24 H -0.296 1.296 25 H -0.258 1.258 26 C -0.116 4.116 27 C -0.117 4.117 28 C -0.171 4.171 29 C -0.036 4.036 30 H 0.075 0.925 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.111 0.889 35 H 0.115 0.885 36 H 0.119 0.881 37 H 0.407 0.593 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.078 0.922 41 H 0.047 0.953 42 H 0.049 0.951 43 H 0.049 0.951 44 H 0.361 0.639 45 H 0.257 0.743 46 H 0.050 0.950 47 H 0.060 0.940 48 H 0.063 0.937 49 H 0.092 0.908 50 H 0.071 0.929 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.383 17.465 19.045 35.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 H 0.098 0.902 4 C -0.149 4.149 5 C -0.072 4.072 6 C -0.088 4.088 7 O 0.055 5.945 8 N -0.060 5.060 9 C -0.197 4.197 10 C 0.382 3.618 11 O -0.421 6.421 12 N -0.351 5.351 13 C 0.046 3.954 14 C -0.152 4.152 15 C -0.169 4.169 16 C 0.069 3.931 17 N -0.396 5.396 18 C -0.354 4.354 19 H 0.078 0.922 20 C -0.257 4.257 21 N -0.634 5.634 22 Si 0.780 3.220 23 H -0.206 1.206 24 H -0.223 1.223 25 H -0.183 1.183 26 C -0.154 4.154 27 C -0.156 4.156 28 C -0.176 4.176 29 C -0.074 4.074 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.129 0.871 35 H 0.133 0.867 36 H 0.136 0.864 37 H 0.244 0.756 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.097 0.903 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.194 0.806 45 H 0.066 0.934 46 H 0.069 0.931 47 H 0.079 0.921 48 H 0.082 0.918 49 H 0.110 0.890 50 H 0.090 0.910 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -23.788 17.229 18.034 34.466 hybrid contribution 0.684 -0.886 0.524 1.236 sum -23.104 16.343 18.558 33.842 Atomic orbital electron populations 1.21792 0.93424 1.02335 1.02609 1.21313 0.96891 0.99678 0.93082 0.90217 1.21772 0.92574 1.01625 0.98895 1.20608 0.94282 1.05007 0.87339 1.24964 0.82237 1.01310 1.00297 1.84661 1.28184 1.62133 1.19547 1.74603 1.23073 1.17446 0.90923 1.23173 0.91302 1.08187 0.97078 1.17000 0.84799 0.76726 0.83251 1.90744 1.24112 1.52897 1.74371 1.46109 1.10668 1.68764 1.09548 1.21127 0.98708 0.97018 0.78514 1.21771 0.92720 0.99662 1.01027 1.22061 0.98355 0.96306 1.00197 1.20442 0.86895 0.88781 0.96987 1.42867 1.24738 1.56548 1.15460 1.19035 0.98343 1.21308 0.96723 0.92213 1.25450 0.96926 1.01328 1.01954 1.69875 1.13487 1.41639 1.38435 0.85455 0.76633 0.78850 0.81085 1.20622 1.22295 1.18267 1.21682 0.94654 0.99690 0.99375 1.21821 0.97359 0.93549 1.02830 1.20957 0.99411 1.06586 0.90686 1.20080 0.86108 1.01438 0.99734 0.90628 0.92921 0.92511 0.91471 0.87071 0.86695 0.86350 0.75628 0.88459 0.88695 0.90335 0.93391 0.93256 0.93295 0.80587 0.93448 0.93131 0.92109 0.91837 0.88959 0.91027 0.90581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.16 71.98 0.66 -0.44 16 2 C -0.09 -0.87 2.71 -10.57 -0.03 -0.90 16 3 H 0.08 0.72 8.12 -2.38 -0.02 0.70 16 4 C -0.11 -0.65 5.18 30.78 0.16 -0.49 16 5 C -0.03 -0.24 6.31 29.96 0.19 -0.05 16 6 C -0.02 -0.40 7.38 24.99 0.18 -0.21 16 7 O 0.13 2.85 11.18 78.72 0.88 3.73 16 8 N -0.36 -9.66 11.89 -48.94 -0.58 -10.25 16 9 C -0.04 -1.09 7.19 42.55 0.31 -0.78 16 10 C 0.60 17.14 7.81 86.93 0.68 17.82 16 11 O -0.54 -17.20 15.75 -3.70 -0.06 -17.26 16 12 N -0.70 -18.58 4.23 -444.95 -1.88 -20.46 16 13 C 0.15 3.66 2.78 44.99 0.13 3.79 16 14 C -0.11 -2.76 5.61 30.60 0.17 -2.58 16 15 C -0.13 -4.23 5.33 30.59 0.16 -4.06 16 16 C 0.18 6.56 2.77 44.99 0.12 6.68 16 17 N -0.75 -35.51 4.93 -322.93 -1.59 -37.10 16 18 C -0.22 -12.77 10.41 84.03 0.87 -11.90 16 19 H 0.06 3.72 8.06 -2.91 -0.02 3.70 16 20 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 21 N -0.98 -63.78 13.97 21.65 0.30 -63.47 16 22 Si 0.95 46.83 27.74 68.60 1.90 48.73 16 23 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 24 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 25 H -0.26 -11.68 6.52 99.48 0.65 -11.03 16 26 C -0.12 -3.60 5.23 30.59 0.16 -3.44 16 27 C -0.12 -2.98 5.60 30.59 0.17 -2.81 16 28 C -0.17 -3.65 6.04 -20.05 -0.12 -3.77 16 29 C -0.04 -0.62 4.97 29.83 0.15 -0.48 16 30 H 0.07 0.33 8.14 -2.38 -0.02 0.31 16 31 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.07 0.50 8.12 -2.39 -0.02 0.48 16 34 H 0.11 0.10 8.11 -2.38 -0.02 0.08 16 35 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.41 11.12 6.64 -92.70 -0.62 10.50 16 38 H 0.10 2.29 7.58 -2.39 -0.02 2.27 16 39 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.05 1.62 6.50 -2.39 -0.02 1.60 16 43 H 0.05 1.90 8.08 -2.39 -0.02 1.88 16 44 H 0.36 16.73 5.66 -92.71 -0.52 16.20 16 45 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 46 H 0.05 1.62 7.60 -2.39 -0.02 1.60 16 47 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 48 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 49 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 50 H 0.07 1.46 7.84 -2.39 -0.02 1.45 16 51 H 0.08 1.39 8.12 -2.39 -0.02 1.37 16 Total: -1.00 -74.00 398.70 3.15 -70.85 By element: Atomic # 1 Polarization: 32.56 SS G_CDS: -0.25 Total: 32.31 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: 4.43 Total: -7.07 kcal Atomic # 7 Polarization: -127.54 SS G_CDS: -3.75 Total: -131.29 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: 0.82 Total: -13.53 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 1.90 Total: 48.73 kcal Total: -74.00 3.15 -70.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026586834.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.997 kcal (2) G-P(sol) polarization free energy of solvation -74.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds