Wall clock time and date at job start Wed Apr 1 2020 04:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47292 * 2 1 4 4 O 1.42900 * 109.47137 * 120.00404 * 2 1 3 5 5 C 1.35493 * 117.00216 * 149.99754 * 4 2 1 6 6 C 1.39176 * 119.52443 * 179.97438 * 5 4 2 7 7 C 1.37952 * 119.25751 * 179.97438 * 6 5 4 8 8 C 1.40285 * 118.36128 * 359.97438 * 7 6 5 9 9 C 1.47619 * 120.49646 * 180.02562 * 8 7 6 10 10 O 1.21582 * 120.00240 * 327.27815 * 9 8 7 11 11 N 1.34778 * 119.99969 * 147.27919 * 9 8 7 12 12 C 1.46927 * 120.63036 * 1.80369 * 11 9 8 13 13 C 1.52759 * 109.00581 * 233.58170 * 12 11 9 14 14 C 1.53039 * 109.38412 * 305.58620 * 13 12 11 15 15 C 1.53048 * 109.53594 * 61.24155 * 14 13 12 16 16 H 1.08997 * 109.49840 * 58.58540 * 15 14 13 17 17 N 1.46501 * 109.49470 * 178.68296 * 15 14 13 18 18 C 1.46497 * 119.99843 * 59.83758 * 17 15 14 19 19 C 1.36941 * 120.00019 * 239.83764 * 17 15 14 20 20 H 1.07998 * 119.99610 * 24.57557 * 19 17 15 21 21 C 1.38808 * 119.99833 * 204.58419 * 19 17 15 22 22 N 1.31618 * 120.00409 * 14.26140 * 21 19 17 23 23 Si 1.86804 * 119.99821 * 194.27117 * 21 19 17 24 24 H 1.48499 * 109.47010 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47352 * 119.99878 * 23 21 19 26 26 H 1.48502 * 109.46750 * 239.99931 * 23 21 19 27 27 C 1.46929 * 120.62936 * 182.07790 * 11 9 8 28 28 C 1.39517 * 119.00540 * 0.02562 * 8 7 6 29 29 N 1.31667 * 120.62609 * 359.74430 * 28 8 7 30 30 H 1.09000 * 109.47022 * 59.99702 * 1 2 3 31 31 H 1.08996 * 109.47485 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46617 * 300.00093 * 1 2 3 33 33 H 1.08998 * 109.46617 * 239.99906 * 2 1 3 34 34 H 1.08991 * 109.47279 * 59.99968 * 3 2 1 35 35 H 1.09001 * 109.47103 * 180.02562 * 3 2 1 36 36 H 1.09007 * 109.46981 * 300.00024 * 3 2 1 37 37 H 1.07998 * 120.36819 * 359.97438 * 6 5 4 38 38 H 1.08002 * 120.81801 * 179.97438 * 7 6 5 39 39 H 1.09002 * 109.58568 * 353.41029 * 12 11 9 40 40 H 1.08993 * 109.58762 * 113.83890 * 12 11 9 41 41 H 1.08995 * 109.56612 * 185.54882 * 13 12 11 42 42 H 1.09004 * 109.35861 * 65.49913 * 13 12 11 43 43 H 1.08993 * 109.45947 * 301.22252 * 14 13 12 44 44 H 1.08998 * 109.46163 * 181.25820 * 14 13 12 45 45 H 1.09001 * 109.47247 * 91.16063 * 18 17 15 46 46 H 1.09004 * 109.46856 * 211.15287 * 18 17 15 47 47 H 1.08998 * 109.47384 * 331.15691 * 18 17 15 48 48 H 0.96995 * 120.00406 * 180.02562 * 22 21 19 49 49 H 1.08997 * 109.58746 * 246.15578 * 27 11 9 50 50 H 1.09000 * 109.58751 * 6.44242 * 27 11 9 51 51 H 1.07994 * 119.68977 * 180.02562 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.1971 -1.3122 1.0653 6 6 3.7109 -1.9850 2.1701 7 6 4.9234 -2.6337 2.0606 8 6 5.5944 -2.5887 0.8294 9 6 6.8946 -3.2669 0.6596 10 8 7.6665 -3.3446 1.5957 11 7 7.2259 -3.8000 -0.5331 12 6 6.3208 -3.6797 -1.6842 13 6 6.0557 -5.0712 -2.2561 14 6 7.3889 -5.7526 -2.5729 15 6 8.2044 -5.9044 -1.2867 16 1 7.6373 -6.4901 -0.5633 17 7 9.4668 -6.5849 -1.5857 18 6 10.4100 -5.9937 -2.5382 19 6 9.7653 -7.7737 -0.9750 20 1 8.9709 -8.4051 -0.6052 21 6 11.0887 -8.1670 -0.8310 22 7 12.0580 -7.2964 -1.0173 23 14 11.4939 -9.9322 -0.3733 24 1 10.2353 -10.7054 -0.2209 25 1 12.3242 -10.5427 -1.4424 26 1 12.2443 -9.9514 0.9080 27 6 8.4964 -4.5176 -0.7053 28 6 5.0146 -1.8935 -0.2321 29 7 3.8526 -1.2919 -0.0849 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3632 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.6768 1.9563 0.8899 35 1 3.1301 1.4424 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 3.1663 -1.9990 3.1026 38 1 5.3457 -3.1631 2.9019 39 1 5.3797 -3.2325 -1.3639 40 1 6.7829 -3.0554 -2.4487 41 1 5.4656 -4.9845 -3.1684 42 1 5.5087 -5.6648 -1.5235 43 1 7.9461 -5.1460 -3.2867 44 1 7.2008 -6.7368 -3.0018 45 1 11.1129 -5.3543 -2.0041 46 1 10.9561 -6.7870 -3.0486 47 1 9.8628 -5.4000 -3.2704 48 1 12.9828 -7.5713 -0.9171 49 1 9.1396 -3.9629 -1.3885 50 1 8.9917 -4.6207 0.2602 51 1 5.5213 -1.8521 -1.1849 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027433912.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:42 Heat of formation + Delta-G solvation = 7.790767 kcal Electronic energy + Delta-G solvation = -31072.716330 eV Core-core repulsion = 26974.207383 eV Total energy + Delta-G solvation = -4098.508947 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.26843 -39.93965 -38.33295 -37.35068 -35.20631 -33.70231 -32.78197 -32.47945 -31.43272 -30.70216 -28.60155 -27.66279 -26.00708 -25.79543 -24.62067 -23.73653 -23.29655 -21.70175 -21.50158 -20.08121 -19.00011 -18.65925 -17.75335 -16.90235 -16.73286 -16.08780 -15.66302 -15.44227 -15.01905 -14.87599 -14.62904 -14.40195 -14.12054 -14.01129 -13.66278 -13.61552 -13.39500 -13.32490 -12.81131 -12.74776 -12.71815 -12.64460 -12.50630 -12.35708 -12.17762 -11.89630 -11.33340 -11.17356 -11.10265 -10.99414 -10.82700 -10.63963 -10.42767 -10.37576 -10.21244 -10.17316 -10.03640 -9.83632 -9.74735 -9.56651 -8.74968 -8.57301 -8.33438 -6.74119 -5.74426 -3.20768 0.59094 0.92188 2.64216 2.82778 3.11720 3.38555 3.45813 3.47908 3.58142 3.88240 4.42935 4.46298 4.49148 4.55422 4.58332 4.76177 4.78959 4.87529 4.89409 5.10642 5.15284 5.25368 5.29085 5.34328 5.36984 5.41947 5.42373 5.49050 5.52782 5.59296 5.70436 5.74398 5.80356 5.83170 5.91467 5.99759 6.08315 6.11046 6.22589 6.36912 6.49498 6.65149 6.75927 6.90860 6.92788 6.97384 7.33679 7.45102 7.60687 7.68029 7.81436 8.31841 8.40876 9.22276 9.84841 10.34464 11.31080 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023347 B = 0.002205 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.997494 B =12693.731521 C =13074.164360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.079 3.921 3 C -0.169 4.169 4 O -0.299 6.299 5 C 0.338 3.662 6 C -0.197 4.197 7 C 0.013 3.987 8 C -0.215 4.215 9 C 0.561 3.439 10 O -0.535 6.535 11 N -0.598 5.598 12 C 0.078 3.922 13 C -0.131 4.131 14 C -0.133 4.133 15 C 0.168 3.832 16 H 0.065 0.935 17 N -0.590 5.590 18 C 0.160 3.840 19 C -0.257 4.257 20 H 0.068 0.932 21 C 0.004 3.996 22 N -0.903 5.903 23 Si 0.904 3.096 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.290 1.290 27 C 0.099 3.901 28 C 0.159 3.841 29 N -0.543 5.543 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.147 0.853 38 H 0.152 0.848 39 H 0.098 0.902 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.060 0.940 44 H 0.065 0.935 45 H 0.026 0.974 46 H 0.045 0.955 47 H 0.000 1.000 48 H 0.253 0.747 49 H 0.063 0.937 50 H 0.093 0.907 51 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.172 15.494 -1.205 27.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.023 3.977 3 C -0.226 4.226 4 O -0.206 6.206 5 C 0.160 3.840 6 C -0.218 4.218 7 C -0.013 4.013 8 C -0.221 4.221 9 C 0.348 3.652 10 O -0.412 6.412 11 N -0.331 5.331 12 C -0.044 4.044 13 C -0.169 4.169 14 C -0.173 4.173 15 C 0.059 3.941 16 H 0.083 0.917 17 N -0.311 5.311 18 C 0.015 3.985 19 C -0.386 4.386 20 H 0.086 0.914 21 C -0.195 4.195 22 N -0.547 5.547 23 Si 0.734 3.266 24 H -0.203 1.203 25 H -0.216 1.216 26 H -0.217 1.217 27 C -0.024 4.024 28 C 0.003 3.997 29 N -0.267 5.267 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.110 0.890 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.165 0.835 38 H 0.169 0.831 39 H 0.115 0.885 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.044 0.956 46 H 0.064 0.936 47 H 0.019 0.981 48 H 0.063 0.937 49 H 0.081 0.919 50 H 0.111 0.889 51 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -22.103 15.881 -1.187 27.242 hybrid contribution 0.803 -1.264 0.675 1.642 sum -21.300 14.617 -0.512 25.838 Atomic orbital electron populations 1.21914 0.92783 1.03082 1.03032 1.22401 0.94498 0.92825 0.87942 1.22219 1.02260 0.95519 1.02641 1.86270 1.31535 1.63944 1.38880 1.20031 0.85598 0.88651 0.89740 1.21023 0.98142 1.03253 0.99339 1.21495 0.91247 0.92202 0.96313 1.20870 0.98592 1.06274 0.96326 1.17940 0.85531 0.78856 0.82848 1.90811 1.51518 1.59213 1.39683 1.48184 1.21065 1.54389 1.09412 1.22497 0.94517 0.98810 0.88598 1.21828 0.98790 0.95615 1.00715 1.22085 0.94628 1.00510 1.00073 1.20647 0.88838 0.90882 0.93755 0.91709 1.43932 1.17228 1.22755 1.47221 1.20771 0.91033 0.96592 0.90094 1.19231 0.91230 0.94294 1.33886 0.91435 1.25066 0.96181 0.98079 1.00148 1.70070 0.98878 1.32269 1.53494 0.86194 0.78059 0.84647 0.77695 1.20291 1.21608 1.21686 1.22601 0.83037 0.93548 1.03228 1.23228 0.89304 0.89158 0.98051 1.67328 1.10769 1.24151 1.24442 0.90406 0.91755 0.91635 0.88994 0.91996 0.91884 0.90992 0.83509 0.83053 0.88486 0.90894 0.91125 0.91748 0.92182 0.91656 0.95599 0.93618 0.98123 0.93719 0.91855 0.88860 0.80211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.56 37.16 0.36 -0.51 16 2 C 0.08 0.62 3.11 -26.73 -0.08 0.54 16 3 C -0.17 -1.18 9.53 37.15 0.35 -0.83 16 4 O -0.30 -3.00 9.75 -18.17 -0.18 -3.17 16 5 C 0.34 3.68 7.46 -16.95 -0.13 3.55 16 6 C -0.20 -2.00 10.02 -39.34 -0.39 -2.40 16 7 C 0.01 0.15 9.73 -38.92 -0.38 -0.23 16 8 C -0.21 -2.76 5.54 -104.82 -0.58 -3.34 16 9 C 0.56 9.16 7.46 -12.43 -0.09 9.07 16 10 O -0.53 -10.91 16.24 5.29 0.09 -10.82 16 11 N -0.60 -9.27 2.98 -174.23 -0.52 -9.79 16 12 C 0.08 0.90 4.89 -3.93 -0.02 0.88 16 13 C -0.13 -1.60 6.06 -26.84 -0.16 -1.76 16 14 C -0.13 -2.13 5.12 -26.69 -0.14 -2.27 16 15 C 0.17 3.37 2.74 -67.81 -0.19 3.19 16 16 H 0.06 1.39 7.88 -51.93 -0.41 0.98 16 17 N -0.59 -14.48 2.81 -173.35 -0.49 -14.96 16 18 C 0.16 3.82 7.95 59.85 0.48 4.29 16 19 C -0.26 -7.03 9.55 -15.06 -0.14 -7.17 16 20 H 0.07 1.83 7.85 -52.49 -0.41 1.42 16 21 C 0.00 0.12 5.04 -17.43 -0.09 0.03 16 22 N -0.90 -26.35 10.91 55.49 0.61 -25.75 16 23 Si 0.90 21.96 29.58 -169.99 -5.03 16.93 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 C 0.10 1.90 5.79 -3.71 -0.02 1.88 16 28 C 0.16 1.73 8.62 -17.15 -0.15 1.58 16 29 N -0.54 -5.93 8.61 -13.41 -0.12 -6.04 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.09 0.77 6.97 -51.93 -0.36 0.41 16 34 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 37 H 0.15 1.17 8.06 -52.49 -0.42 0.74 16 38 H 0.15 1.66 8.02 -52.49 -0.42 1.23 16 39 H 0.10 0.95 3.55 -52.93 -0.19 0.76 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.06 0.95 6.71 -51.93 -0.35 0.60 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.03 0.67 7.54 -51.93 -0.39 0.28 16 46 H 0.05 1.18 7.22 -51.93 -0.37 0.81 16 47 H 0.00 0.01 6.44 -51.93 -0.33 -0.33 16 48 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 49 H 0.06 1.21 7.51 -51.93 -0.39 0.82 16 50 H 0.09 2.13 7.01 -51.93 -0.36 1.76 16 51 H 0.18 1.62 5.32 -52.49 -0.28 1.34 16 LS Contribution 400.18 15.07 6.03 6.03 Total: -1.00 -32.40 400.18 -9.04 -41.44 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -8.06 Total: -0.38 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: -1.38 Total: 6.50 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: -0.52 Total: -56.54 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -0.09 Total: -14.00 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.40 -9.04 -41.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027433912.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.232 kcal (2) G-P(sol) polarization free energy of solvation -32.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds