Wall clock time and date at job start Wed Apr 1 2020 04:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47292 * 2 1 4 4 O 1.42900 * 109.47137 * 120.00404 * 2 1 3 5 5 C 1.35493 * 117.00216 * 149.99754 * 4 2 1 6 6 C 1.39176 * 119.52443 * 179.97438 * 5 4 2 7 7 C 1.37952 * 119.25751 * 179.97438 * 6 5 4 8 8 C 1.40285 * 118.36128 * 359.97438 * 7 6 5 9 9 C 1.47619 * 120.49646 * 180.02562 * 8 7 6 10 10 O 1.21582 * 120.00240 * 327.27815 * 9 8 7 11 11 N 1.34778 * 119.99969 * 147.27919 * 9 8 7 12 12 C 1.46927 * 120.63036 * 1.80369 * 11 9 8 13 13 C 1.52759 * 109.00581 * 233.58170 * 12 11 9 14 14 C 1.53039 * 109.38412 * 305.58620 * 13 12 11 15 15 C 1.53048 * 109.53594 * 61.24155 * 14 13 12 16 16 H 1.08997 * 109.49840 * 58.58540 * 15 14 13 17 17 N 1.46501 * 109.49470 * 178.68296 * 15 14 13 18 18 C 1.46497 * 119.99843 * 59.83758 * 17 15 14 19 19 C 1.36941 * 120.00019 * 239.83764 * 17 15 14 20 20 H 1.07998 * 119.99610 * 24.57557 * 19 17 15 21 21 C 1.38808 * 119.99833 * 204.58419 * 19 17 15 22 22 N 1.31618 * 120.00409 * 14.26140 * 21 19 17 23 23 Si 1.86804 * 119.99821 * 194.27117 * 21 19 17 24 24 H 1.48499 * 109.47010 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47352 * 119.99878 * 23 21 19 26 26 H 1.48502 * 109.46750 * 239.99931 * 23 21 19 27 27 C 1.46929 * 120.62936 * 182.07790 * 11 9 8 28 28 C 1.39517 * 119.00540 * 0.02562 * 8 7 6 29 29 N 1.31667 * 120.62609 * 359.74430 * 28 8 7 30 30 H 1.09000 * 109.47022 * 59.99702 * 1 2 3 31 31 H 1.08996 * 109.47485 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46617 * 300.00093 * 1 2 3 33 33 H 1.08998 * 109.46617 * 239.99906 * 2 1 3 34 34 H 1.08991 * 109.47279 * 59.99968 * 3 2 1 35 35 H 1.09001 * 109.47103 * 180.02562 * 3 2 1 36 36 H 1.09007 * 109.46981 * 300.00024 * 3 2 1 37 37 H 1.07998 * 120.36819 * 359.97438 * 6 5 4 38 38 H 1.08002 * 120.81801 * 179.97438 * 7 6 5 39 39 H 1.09002 * 109.58568 * 353.41029 * 12 11 9 40 40 H 1.08993 * 109.58762 * 113.83890 * 12 11 9 41 41 H 1.08995 * 109.56612 * 185.54882 * 13 12 11 42 42 H 1.09004 * 109.35861 * 65.49913 * 13 12 11 43 43 H 1.08993 * 109.45947 * 301.22252 * 14 13 12 44 44 H 1.08998 * 109.46163 * 181.25820 * 14 13 12 45 45 H 1.09001 * 109.47247 * 91.16063 * 18 17 15 46 46 H 1.09004 * 109.46856 * 211.15287 * 18 17 15 47 47 H 1.08998 * 109.47384 * 331.15691 * 18 17 15 48 48 H 0.96995 * 120.00406 * 180.02562 * 22 21 19 49 49 H 1.08997 * 109.58746 * 246.15578 * 27 11 9 50 50 H 1.09000 * 109.58751 * 6.44242 * 27 11 9 51 51 H 1.07994 * 119.68977 * 180.02562 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.1971 -1.3122 1.0653 6 6 3.7109 -1.9850 2.1701 7 6 4.9234 -2.6337 2.0606 8 6 5.5944 -2.5887 0.8294 9 6 6.8946 -3.2669 0.6596 10 8 7.6665 -3.3446 1.5957 11 7 7.2259 -3.8000 -0.5331 12 6 6.3208 -3.6797 -1.6842 13 6 6.0557 -5.0712 -2.2561 14 6 7.3889 -5.7526 -2.5729 15 6 8.2044 -5.9044 -1.2867 16 1 7.6373 -6.4901 -0.5633 17 7 9.4668 -6.5849 -1.5857 18 6 10.4100 -5.9937 -2.5382 19 6 9.7653 -7.7737 -0.9750 20 1 8.9709 -8.4051 -0.6052 21 6 11.0887 -8.1670 -0.8310 22 7 12.0580 -7.2964 -1.0173 23 14 11.4939 -9.9322 -0.3733 24 1 10.2353 -10.7054 -0.2209 25 1 12.3242 -10.5427 -1.4424 26 1 12.2443 -9.9514 0.9080 27 6 8.4964 -4.5176 -0.7053 28 6 5.0146 -1.8935 -0.2321 29 7 3.8526 -1.2919 -0.0849 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3632 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.6768 1.9563 0.8899 35 1 3.1301 1.4424 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 3.1663 -1.9990 3.1026 38 1 5.3457 -3.1631 2.9019 39 1 5.3797 -3.2325 -1.3639 40 1 6.7829 -3.0554 -2.4487 41 1 5.4656 -4.9845 -3.1684 42 1 5.5087 -5.6648 -1.5235 43 1 7.9461 -5.1460 -3.2867 44 1 7.2008 -6.7368 -3.0018 45 1 11.1129 -5.3543 -2.0041 46 1 10.9561 -6.7870 -3.0486 47 1 9.8628 -5.4000 -3.2704 48 1 12.9828 -7.5713 -0.9171 49 1 9.1396 -3.9629 -1.3885 50 1 8.9917 -4.6207 0.2602 51 1 5.5213 -1.8521 -1.1849 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027433912.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:41 Heat of formation + Delta-G solvation = -12.960780 kcal Electronic energy + Delta-G solvation = -31073.616184 eV Core-core repulsion = 26974.207383 eV Total energy + Delta-G solvation = -4099.408802 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.22002 -41.03500 -39.31010 -38.72059 -36.87157 -34.46851 -33.95487 -33.66070 -32.87593 -31.93963 -30.08471 -28.14616 -28.03882 -26.98811 -25.73469 -24.90880 -24.58941 -23.06415 -22.20673 -21.41462 -20.25728 -19.57457 -18.91314 -18.68572 -17.83134 -17.11644 -16.99276 -16.67418 -16.29939 -16.03876 -15.72017 -15.51834 -15.37847 -15.13639 -14.96765 -14.82301 -14.45026 -14.41785 -14.10629 -13.99545 -13.91716 -13.57154 -13.49100 -13.27025 -13.15848 -12.94701 -12.86900 -12.78049 -12.48022 -12.20451 -12.11538 -12.07827 -11.90692 -11.78533 -11.74671 -11.68162 -11.39107 -11.11410 -11.00446 -10.65567 -10.64150 -9.80477 -9.53650 -8.75209 -7.86418 -5.35132 -0.33711 0.06483 1.43331 1.44758 1.55250 1.63498 1.86279 1.95880 2.49214 2.62951 3.08173 3.27428 3.38076 3.59543 3.69428 3.87933 3.93567 3.99124 4.02794 4.03859 4.06172 4.09599 4.23774 4.31194 4.36984 4.51834 4.57961 4.60968 4.68190 4.73668 4.76627 4.84600 4.86613 4.88382 4.93669 4.94638 4.98839 5.05160 5.16267 5.22416 5.24880 5.29570 5.30706 5.41326 5.45027 5.55719 5.62552 5.69175 6.15480 6.31930 6.36333 6.60016 7.04908 7.13292 7.84592 8.27953 9.16978 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023347 B = 0.002205 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.997494 B =12693.731521 C =13074.164360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.072 3.928 3 C -0.166 4.166 4 O -0.304 6.304 5 C 0.337 3.663 6 C -0.192 4.192 7 C 0.008 3.992 8 C -0.231 4.231 9 C 0.559 3.441 10 O -0.588 6.588 11 N -0.596 5.596 12 C 0.074 3.926 13 C -0.122 4.122 14 C -0.122 4.122 15 C 0.166 3.834 16 H 0.043 0.957 17 N -0.607 5.607 18 C 0.177 3.823 19 C -0.265 4.265 20 H 0.065 0.935 21 C -0.052 4.052 22 N -0.935 5.935 23 Si 0.967 3.033 24 H -0.267 1.267 25 H -0.287 1.287 26 H -0.295 1.295 27 C 0.115 3.885 28 C 0.170 3.830 29 N -0.542 5.542 30 H 0.097 0.903 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.046 0.954 36 H 0.090 0.910 37 H 0.169 0.831 38 H 0.149 0.851 39 H 0.122 0.878 40 H 0.101 0.899 41 H 0.111 0.889 42 H 0.057 0.943 43 H 0.068 0.932 44 H 0.057 0.943 45 H -0.004 1.004 46 H 0.018 0.982 47 H 0.040 0.960 48 H 0.249 0.751 49 H 0.064 0.936 50 H 0.045 0.955 51 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.564 16.719 -2.794 30.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.016 3.984 3 C -0.223 4.223 4 O -0.211 6.211 5 C 0.158 3.842 6 C -0.212 4.212 7 C -0.017 4.017 8 C -0.237 4.237 9 C 0.349 3.651 10 O -0.470 6.470 11 N -0.327 5.327 12 C -0.046 4.046 13 C -0.161 4.161 14 C -0.161 4.161 15 C 0.058 3.942 16 H 0.061 0.939 17 N -0.329 5.329 18 C 0.032 3.968 19 C -0.395 4.395 20 H 0.083 0.917 21 C -0.247 4.247 22 N -0.581 5.581 23 Si 0.796 3.204 24 H -0.191 1.191 25 H -0.213 1.213 26 H -0.222 1.222 27 C -0.009 4.009 28 C 0.014 3.986 29 N -0.266 5.266 30 H 0.116 0.884 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.109 0.891 37 H 0.187 0.813 38 H 0.167 0.833 39 H 0.139 0.861 40 H 0.119 0.881 41 H 0.129 0.871 42 H 0.076 0.924 43 H 0.087 0.913 44 H 0.076 0.924 45 H 0.015 0.985 46 H 0.037 0.963 47 H 0.058 0.942 48 H 0.058 0.942 49 H 0.083 0.917 50 H 0.064 0.936 51 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -25.578 17.127 -2.806 30.910 hybrid contribution 1.711 -1.548 1.195 2.598 sum -23.867 15.579 -1.611 28.547 Atomic orbital electron populations 1.21926 0.91056 1.03300 1.04112 1.22666 0.95832 0.92911 0.86980 1.22203 1.01147 0.95246 1.03701 1.86282 1.30950 1.63776 1.40106 1.20259 0.85809 0.88250 0.89837 1.21192 0.97487 1.02353 1.00185 1.21563 0.91791 0.92438 0.95956 1.20604 0.97294 1.07902 0.97858 1.18480 0.86254 0.78286 0.82129 1.90781 1.53360 1.61396 1.41447 1.48177 1.20324 1.53461 1.10743 1.22873 0.94919 0.99244 0.87597 1.21815 0.96682 0.95139 1.02442 1.21919 0.96043 1.00942 0.97222 1.20798 0.87254 0.90375 0.95748 0.93895 1.44156 1.18591 1.22735 1.47452 1.20502 0.90755 0.95420 0.90127 1.19517 0.91287 0.95528 1.33157 0.91716 1.25827 0.96182 1.01769 1.00945 1.70225 0.98845 1.33882 1.55142 0.85202 0.77934 0.80370 0.76927 1.19117 1.21327 1.22193 1.22040 0.84693 0.93739 1.00461 1.23451 0.89055 0.88009 0.98133 1.67421 1.10595 1.24061 1.24532 0.88435 0.91971 0.91463 0.89367 0.91841 0.93513 0.89089 0.81348 0.83288 0.86075 0.88124 0.87066 0.92382 0.91317 0.92387 0.98528 0.96272 0.94215 0.94198 0.91734 0.93624 0.78027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.56 71.98 0.69 -0.57 16 2 C 0.07 0.94 3.11 30.59 0.10 1.03 16 3 C -0.17 -1.92 9.53 71.98 0.69 -1.23 16 4 O -0.30 -5.37 9.75 -87.94 -0.86 -6.22 16 5 C 0.34 6.55 7.46 84.83 0.63 7.18 16 6 C -0.19 -3.55 10.02 22.43 0.22 -3.33 16 7 C 0.01 0.18 9.73 22.70 0.22 0.40 16 8 C -0.23 -5.69 5.54 -19.99 -0.11 -5.80 16 9 C 0.56 18.48 7.46 86.72 0.65 19.13 16 10 O -0.59 -25.35 16.24 -3.98 -0.06 -25.42 16 11 N -0.60 -18.15 2.98 -823.41 -2.45 -20.60 16 12 C 0.07 1.46 4.89 86.22 0.42 1.88 16 13 C -0.12 -2.55 6.06 30.53 0.19 -2.37 16 14 C -0.12 -3.66 5.12 30.62 0.16 -3.50 16 15 C 0.17 6.76 2.74 45.07 0.12 6.88 16 16 H 0.04 1.90 7.88 -2.39 -0.02 1.88 16 17 N -0.61 -30.57 2.81 -702.35 -1.97 -32.54 16 18 C 0.18 8.62 7.95 127.77 1.02 9.64 16 19 C -0.26 -14.90 9.55 84.03 0.80 -14.10 16 20 H 0.07 3.60 7.85 -2.91 -0.02 3.58 16 21 C -0.05 -2.97 5.04 84.86 0.43 -2.54 16 22 N -0.93 -56.63 10.91 21.65 0.24 -56.39 16 23 Si 0.97 46.27 29.58 68.60 2.03 48.29 16 24 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 25 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 26 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 27 C 0.12 4.55 5.79 86.36 0.50 5.05 16 28 C 0.17 3.26 8.62 85.03 0.73 3.99 16 29 N -0.54 -10.36 8.61 -309.22 -2.66 -13.02 16 30 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.09 1.23 6.97 -2.39 -0.02 1.22 16 34 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 37 H 0.17 2.31 8.06 -2.91 -0.02 2.28 16 38 H 0.15 3.33 8.02 -2.91 -0.02 3.31 16 39 H 0.12 1.89 3.55 -3.33 -0.01 1.88 16 40 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 43 H 0.07 1.96 6.71 -2.39 -0.02 1.94 16 44 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.00 -0.19 7.54 -2.39 -0.02 -0.21 16 46 H 0.02 1.00 7.22 -2.38 -0.02 0.98 16 47 H 0.04 1.59 6.44 -2.39 -0.02 1.57 16 48 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 49 H 0.06 2.51 7.51 -2.39 -0.02 2.49 16 50 H 0.05 2.23 7.01 -2.39 -0.02 2.21 16 51 H 0.20 2.86 5.32 -2.91 -0.02 2.85 16 Total: -1.00 -74.93 400.18 2.63 -72.30 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 0.92 Total: 11.85 kcal Atomic # 6 Polarization: 14.30 SS G_CDS: 7.45 Total: 21.75 kcal Atomic # 7 Polarization: -115.71 SS G_CDS: -6.85 Total: -122.55 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -0.92 Total: -31.64 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.29 kcal Total: -74.93 2.63 -72.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027433912.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.343 kcal (2) G-P(sol) polarization free energy of solvation -74.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds