Wall clock time and date at job start Wed Apr 1 2020 05:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47046 * 2 1 4 4 O 1.42902 * 109.47084 * 120.00031 * 2 1 3 5 5 C 1.35660 * 117.00083 * 81.88765 * 4 2 1 6 6 C 1.38944 * 120.57976 * 354.17057 * 5 4 2 7 7 N 1.31631 * 120.79102 * 180.26244 * 6 5 4 8 8 C 1.31900 * 122.14783 * 359.74928 * 7 6 5 9 9 C 1.37972 * 121.07441 * 359.97115 * 8 7 6 10 10 C 1.39943 * 119.06911 * 0.02700 * 9 8 7 11 11 C 1.47835 * 120.96144 * 179.97438 * 10 9 8 12 12 O 1.21556 * 119.99944 * 214.42077 * 11 10 9 13 13 N 1.34782 * 120.00474 * 34.41831 * 11 10 9 14 14 C 1.46933 * 120.59761 * 4.93245 * 13 11 10 15 15 C 1.53194 * 108.76899 * 233.57639 * 14 13 11 16 16 C 1.53041 * 109.33939 * 305.41696 * 15 14 13 17 17 C 1.53037 * 109.53991 * 61.34889 * 16 15 14 18 18 H 1.09007 * 109.49854 * 58.61727 * 17 16 15 19 19 N 1.46501 * 109.50240 * 178.68528 * 17 16 15 20 20 C 1.46500 * 120.00193 * 59.99611 * 19 17 16 21 21 C 1.36939 * 119.99764 * 240.00425 * 19 17 16 22 22 H 1.07995 * 120.00211 * 318.33686 * 21 19 17 23 23 C 1.38812 * 120.00052 * 138.34004 * 21 19 17 24 24 N 1.31612 * 120.00351 * 169.55100 * 23 21 19 25 25 Si 1.86801 * 119.99835 * 349.55677 * 23 21 19 26 26 H 1.48502 * 109.47388 * 89.67768 * 25 23 21 27 27 H 1.48508 * 109.46798 * 209.68050 * 25 23 21 28 28 H 1.48502 * 109.47256 * 329.67438 * 25 23 21 29 29 C 1.46920 * 120.63228 * 184.95708 * 13 11 10 30 30 H 1.08994 * 109.47198 * 60.00118 * 1 2 3 31 31 H 1.09000 * 109.47404 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47068 * 300.00187 * 1 2 3 33 33 H 1.09000 * 109.47068 * 239.99813 * 2 1 3 34 34 H 1.09001 * 109.47071 * 179.97438 * 3 2 1 35 35 H 1.09004 * 109.46554 * 299.99893 * 3 2 1 36 36 H 1.09000 * 109.47340 * 59.99980 * 3 2 1 37 37 H 1.08003 * 119.60296 * 359.97438 * 6 5 4 38 38 H 1.07998 * 119.46479 * 179.97438 * 8 7 6 39 39 H 1.08001 * 120.46177 * 180.02562 * 9 8 7 40 40 H 1.09002 * 109.56149 * 113.80976 * 14 13 11 41 41 H 1.08998 * 109.61915 * 353.38084 * 14 13 11 42 42 H 1.08998 * 109.49554 * 185.45363 * 15 14 13 43 43 H 1.08999 * 109.49743 * 65.38465 * 15 14 13 44 44 H 1.09004 * 109.46257 * 181.37327 * 16 15 14 45 45 H 1.09000 * 109.45877 * 301.32748 * 16 15 14 46 46 H 1.09001 * 109.46904 * 84.24604 * 20 19 17 47 47 H 1.08991 * 109.47190 * 204.24683 * 20 19 17 48 48 H 1.09000 * 109.46814 * 324.25084 * 20 19 17 49 49 H 0.97001 * 120.00706 * 179.97438 * 24 23 21 50 50 H 1.09002 * 109.58618 * 6.59547 * 29 13 11 51 51 H 1.09002 * 109.58289 * 246.17658 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0508 -2.0287 1.1206 6 6 1.5353 -2.7161 0.0287 7 7 1.5717 -4.0310 -0.0182 8 6 2.0961 -4.7537 0.9526 9 6 2.6366 -4.1564 2.0728 10 6 2.6233 -2.7606 2.1724 11 6 3.1904 -2.0770 3.3542 12 8 2.6837 -1.0511 3.7643 13 7 4.2693 -2.5914 3.9771 14 6 4.9575 -3.7692 3.4310 15 6 5.0561 -4.8348 4.5272 16 6 5.7274 -4.2304 5.7626 17 6 4.8789 -3.0713 6.2906 18 1 3.8806 -3.4336 6.5364 19 7 5.5060 -2.5136 7.4914 20 6 6.8593 -1.9571 7.4199 21 6 4.8272 -2.5126 8.6807 22 1 3.7773 -2.2605 8.7031 23 6 5.4886 -2.8355 9.8577 24 7 4.9006 -2.6380 11.0185 25 14 7.2133 -3.5503 9.7939 26 1 8.2075 -2.4476 9.8217 27 1 7.4250 -4.4374 10.9659 28 1 7.3783 -4.3343 8.5435 29 6 4.7789 -1.9854 5.2147 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9563 -0.8901 36 1 1.6767 1.9564 0.8900 37 1 1.0953 -2.1650 -0.7894 38 1 2.1027 -5.8304 0.8693 39 1 3.0639 -4.7577 2.8616 40 1 5.9584 -3.4879 3.1037 41 1 4.3924 -4.1645 2.5869 42 1 5.6489 -5.6749 4.1655 43 1 4.0562 -5.1809 4.7891 44 1 5.8206 -4.9936 6.5352 45 1 6.7178 -3.8626 5.4944 46 1 6.8094 -0.9231 7.0785 47 1 7.3191 -1.9918 8.4075 48 1 7.4563 -2.5423 6.7204 49 1 5.3626 -2.8640 11.8409 50 1 4.0959 -1.2036 5.5469 51 1 5.7654 -1.5588 5.0334 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027507601.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:22 Heat of formation + Delta-G solvation = 12.507198 kcal Electronic energy + Delta-G solvation = -31861.831787 eV Core-core repulsion = 27763.527360 eV Total energy + Delta-G solvation = -4098.304427 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.39173 -39.78667 -38.67592 -37.51730 -35.40204 -33.84412 -32.91865 -32.08223 -31.54692 -30.52596 -29.40631 -27.68183 -26.22258 -26.03155 -24.32899 -24.23152 -23.24500 -21.81307 -21.57397 -20.33118 -18.97300 -18.30422 -17.69277 -17.12580 -16.82741 -16.17622 -15.85441 -15.60531 -15.41133 -15.01003 -14.84159 -14.47149 -14.27711 -14.13316 -13.76462 -13.73705 -13.46209 -13.35039 -13.15088 -12.76857 -12.61310 -12.53979 -12.48458 -12.41448 -12.32881 -12.13572 -12.04347 -11.43708 -11.32846 -11.23152 -11.08764 -10.77798 -10.54239 -10.40197 -10.22384 -10.10629 -9.89178 -9.87062 -9.54425 -9.39545 -8.74546 -8.68217 -8.38718 -6.79904 -5.97043 -3.51535 0.52366 0.82547 2.72754 2.83252 3.00185 3.27518 3.41810 3.46878 3.51573 4.08874 4.19105 4.32775 4.42812 4.47712 4.48174 4.61091 4.65701 4.75642 4.85738 5.01418 5.10082 5.13031 5.17972 5.20193 5.31178 5.32751 5.36368 5.39831 5.42357 5.48310 5.60807 5.62998 5.74522 5.79007 5.81718 5.83037 5.99294 6.08422 6.13815 6.18970 6.30216 6.36222 6.45739 6.56942 6.66840 6.82273 6.87494 6.96871 7.50968 7.57158 8.07258 8.25747 8.39777 8.94773 9.67072 10.07187 11.17543 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017086 B = 0.002793 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.396589 B =10023.683569 C =10910.306501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.071 3.929 3 C -0.147 4.147 4 O -0.277 6.277 5 C 0.133 3.867 6 C 0.011 3.989 7 N -0.436 5.436 8 C 0.050 3.950 9 C -0.109 4.109 10 C -0.119 4.119 11 C 0.560 3.440 12 O -0.514 6.514 13 N -0.599 5.599 14 C 0.080 3.920 15 C -0.133 4.133 16 C -0.137 4.137 17 C 0.169 3.831 18 H 0.076 0.924 19 N -0.603 5.603 20 C 0.103 3.897 21 C -0.269 4.269 22 H 0.080 0.920 23 C 0.033 3.967 24 N -0.909 5.909 25 Si 0.901 3.099 26 H -0.287 1.287 27 H -0.305 1.305 28 H -0.269 1.269 29 C 0.102 3.898 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.164 0.836 38 H 0.165 0.835 39 H 0.160 0.840 40 H 0.067 0.933 41 H 0.099 0.901 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.057 0.943 46 H 0.016 0.984 47 H 0.048 0.952 48 H 0.030 0.970 49 H 0.264 0.736 50 H 0.093 0.907 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.408 -1.596 -26.496 26.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.015 3.985 3 C -0.204 4.204 4 O -0.188 6.188 5 C 0.082 3.918 6 C -0.149 4.149 7 N -0.146 5.146 8 C -0.106 4.106 9 C -0.129 4.129 10 C -0.131 4.131 11 C 0.347 3.653 12 O -0.389 6.389 13 N -0.333 5.333 14 C -0.042 4.042 15 C -0.172 4.172 16 C -0.177 4.177 17 C 0.060 3.940 18 H 0.094 0.906 19 N -0.327 5.327 20 C -0.041 4.041 21 C -0.398 4.398 22 H 0.097 0.903 23 C -0.168 4.168 24 N -0.550 5.550 25 Si 0.733 3.267 26 H -0.215 1.215 27 H -0.234 1.234 28 H -0.194 1.194 29 C -0.022 4.022 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.181 0.819 38 H 0.182 0.818 39 H 0.178 0.822 40 H 0.086 0.914 41 H 0.116 0.884 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.076 0.924 46 H 0.034 0.966 47 H 0.066 0.934 48 H 0.048 0.952 49 H 0.074 0.926 50 H 0.112 0.888 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.949 -1.275 -26.588 26.910 hybrid contribution 1.382 -0.072 0.716 1.558 sum -2.567 -1.347 -25.872 26.034 Atomic orbital electron populations 1.22448 0.94674 1.03269 1.03737 1.22595 0.94755 0.94317 0.86806 1.21829 1.02285 0.92976 1.03360 1.86355 1.79207 1.14279 1.38934 1.20060 0.93317 0.84419 0.93974 1.23016 1.02926 0.90989 0.97926 1.67354 1.12380 1.06649 1.28188 1.22597 0.97418 1.00569 0.90015 1.22585 0.97190 0.93129 1.00023 1.19862 1.03780 0.93486 0.95971 1.17866 0.80481 0.84377 0.82583 1.90824 1.60131 1.22833 1.65157 1.47995 1.28791 1.30467 1.26049 1.22429 0.98092 0.86308 0.97374 1.21939 1.01850 0.97357 0.96059 1.22117 0.99522 0.99654 0.96361 1.20748 0.96854 0.90239 0.86122 0.90585 1.43983 1.14203 1.68403 1.06085 1.21421 0.87236 0.95979 0.99492 1.18835 0.96141 1.42242 0.82605 0.90265 1.25572 0.98388 0.97340 0.95456 1.69768 1.38353 1.49739 0.97159 0.86642 0.84826 0.78630 0.76579 1.21526 1.23406 1.19395 1.22354 0.99391 0.97921 0.82493 0.90651 0.91803 0.90844 0.90902 0.91532 0.90314 0.90959 0.81864 0.81830 0.82238 0.91443 0.88377 0.90909 0.91382 0.91245 0.92448 0.96602 0.93378 0.95174 0.92627 0.88848 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.35 9.10 37.16 0.34 -1.01 16 2 C 0.07 0.61 2.86 -26.73 -0.08 0.53 16 3 C -0.15 -1.11 9.56 37.16 0.36 -0.76 16 4 O -0.28 -3.61 8.58 -35.29 -0.30 -3.91 16 5 C 0.13 1.66 6.57 -38.53 -0.25 1.40 16 6 C 0.01 0.11 9.31 -17.38 -0.16 -0.05 16 7 N -0.44 -4.65 10.32 -13.17 -0.14 -4.79 16 8 C 0.05 0.46 11.16 -17.62 -0.20 0.26 16 9 C -0.11 -1.11 7.52 -39.04 -0.29 -1.40 16 10 C -0.12 -1.58 5.47 -104.54 -0.57 -2.16 16 11 C 0.56 9.23 7.32 -12.33 -0.09 9.14 16 12 O -0.51 -10.51 15.46 -11.29 -0.17 -10.68 16 13 N -0.60 -9.07 2.97 -173.88 -0.52 -9.58 16 14 C 0.08 0.91 5.57 -3.71 -0.02 0.88 16 15 C -0.13 -1.54 5.77 -26.61 -0.15 -1.70 16 16 C -0.14 -2.19 5.10 -26.69 -0.14 -2.33 16 17 C 0.17 3.27 2.75 -67.81 -0.19 3.08 16 18 H 0.08 1.60 7.89 -51.92 -0.41 1.19 16 19 N -0.60 -14.15 2.37 -173.35 -0.41 -14.56 16 20 C 0.10 2.21 8.14 59.85 0.49 2.70 16 21 C -0.27 -7.56 9.90 -15.06 -0.15 -7.71 16 22 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 23 C 0.03 0.94 5.43 -17.43 -0.09 0.85 16 24 N -0.91 -27.96 13.97 55.49 0.78 -27.19 16 25 Si 0.90 22.36 24.67 -169.99 -4.19 18.16 16 26 H -0.29 -6.93 6.61 56.52 0.37 -6.56 16 27 H -0.31 -7.73 7.11 56.52 0.40 -7.32 16 28 H -0.27 -6.36 7.04 56.52 0.40 -5.96 16 29 C 0.10 1.82 5.78 -3.71 -0.02 1.79 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.48 6.54 -51.93 -0.34 0.14 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.49 6.56 -51.93 -0.34 0.15 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.16 1.28 5.32 -52.48 -0.28 1.00 16 38 H 0.16 0.99 8.06 -52.49 -0.42 0.56 16 39 H 0.16 1.35 5.24 -52.49 -0.28 1.08 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.10 0.91 3.46 -51.93 -0.18 0.73 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.78 7.74 -51.93 -0.40 0.38 16 44 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.06 0.90 6.76 -51.93 -0.35 0.55 16 46 H 0.02 0.32 8.13 -51.93 -0.42 -0.10 16 47 H 0.05 1.12 3.09 -51.93 -0.16 0.96 16 48 H 0.03 0.56 6.49 -51.93 -0.34 0.23 16 49 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 50 H 0.09 1.93 7.03 -51.93 -0.37 1.57 16 51 H 0.06 1.07 7.50 -51.93 -0.39 0.68 16 LS Contribution 387.74 15.07 5.84 5.84 Total: -1.00 -34.76 387.74 -7.99 -42.75 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -7.65 Total: 0.40 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -1.23 Total: 3.55 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: -0.29 Total: -56.12 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.48 Total: -14.59 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.19 Total: 18.16 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.76 -7.99 -42.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027507601.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.261 kcal (2) G-P(sol) polarization free energy of solvation -34.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds