Wall clock time and date at job start Wed Apr 1 2020 05:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47046 * 2 1 4 4 O 1.42902 * 109.47084 * 120.00031 * 2 1 3 5 5 C 1.35660 * 117.00083 * 81.88765 * 4 2 1 6 6 C 1.38944 * 120.57976 * 354.17057 * 5 4 2 7 7 N 1.31631 * 120.79102 * 180.26244 * 6 5 4 8 8 C 1.31900 * 122.14783 * 359.74928 * 7 6 5 9 9 C 1.37972 * 121.07441 * 359.97115 * 8 7 6 10 10 C 1.39943 * 119.06911 * 0.02700 * 9 8 7 11 11 C 1.47835 * 120.96144 * 179.97438 * 10 9 8 12 12 O 1.21556 * 119.99944 * 214.42077 * 11 10 9 13 13 N 1.34782 * 120.00474 * 34.41831 * 11 10 9 14 14 C 1.46933 * 120.59761 * 4.93245 * 13 11 10 15 15 C 1.53194 * 108.76899 * 233.57639 * 14 13 11 16 16 C 1.53041 * 109.33939 * 305.41696 * 15 14 13 17 17 C 1.53037 * 109.53991 * 61.34889 * 16 15 14 18 18 H 1.09007 * 109.49854 * 58.61727 * 17 16 15 19 19 N 1.46501 * 109.50240 * 178.68528 * 17 16 15 20 20 C 1.46500 * 120.00193 * 59.99611 * 19 17 16 21 21 C 1.36939 * 119.99764 * 240.00425 * 19 17 16 22 22 H 1.07995 * 120.00211 * 318.33686 * 21 19 17 23 23 C 1.38812 * 120.00052 * 138.34004 * 21 19 17 24 24 N 1.31612 * 120.00351 * 169.55100 * 23 21 19 25 25 Si 1.86801 * 119.99835 * 349.55677 * 23 21 19 26 26 H 1.48502 * 109.47388 * 89.67768 * 25 23 21 27 27 H 1.48508 * 109.46798 * 209.68050 * 25 23 21 28 28 H 1.48502 * 109.47256 * 329.67438 * 25 23 21 29 29 C 1.46920 * 120.63228 * 184.95708 * 13 11 10 30 30 H 1.08994 * 109.47198 * 60.00118 * 1 2 3 31 31 H 1.09000 * 109.47404 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47068 * 300.00187 * 1 2 3 33 33 H 1.09000 * 109.47068 * 239.99813 * 2 1 3 34 34 H 1.09001 * 109.47071 * 179.97438 * 3 2 1 35 35 H 1.09004 * 109.46554 * 299.99893 * 3 2 1 36 36 H 1.09000 * 109.47340 * 59.99980 * 3 2 1 37 37 H 1.08003 * 119.60296 * 359.97438 * 6 5 4 38 38 H 1.07998 * 119.46479 * 179.97438 * 8 7 6 39 39 H 1.08001 * 120.46177 * 180.02562 * 9 8 7 40 40 H 1.09002 * 109.56149 * 113.80976 * 14 13 11 41 41 H 1.08998 * 109.61915 * 353.38084 * 14 13 11 42 42 H 1.08998 * 109.49554 * 185.45363 * 15 14 13 43 43 H 1.08999 * 109.49743 * 65.38465 * 15 14 13 44 44 H 1.09004 * 109.46257 * 181.37327 * 16 15 14 45 45 H 1.09000 * 109.45877 * 301.32748 * 16 15 14 46 46 H 1.09001 * 109.46904 * 84.24604 * 20 19 17 47 47 H 1.08991 * 109.47190 * 204.24683 * 20 19 17 48 48 H 1.09000 * 109.46814 * 324.25084 * 20 19 17 49 49 H 0.97001 * 120.00706 * 179.97438 * 24 23 21 50 50 H 1.09002 * 109.58618 * 6.59547 * 29 13 11 51 51 H 1.09002 * 109.58289 * 246.17658 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0508 -2.0287 1.1206 6 6 1.5353 -2.7161 0.0287 7 7 1.5717 -4.0310 -0.0182 8 6 2.0961 -4.7537 0.9526 9 6 2.6366 -4.1564 2.0728 10 6 2.6233 -2.7606 2.1724 11 6 3.1904 -2.0770 3.3542 12 8 2.6837 -1.0511 3.7643 13 7 4.2693 -2.5914 3.9771 14 6 4.9575 -3.7692 3.4310 15 6 5.0561 -4.8348 4.5272 16 6 5.7274 -4.2304 5.7626 17 6 4.8789 -3.0713 6.2906 18 1 3.8806 -3.4336 6.5364 19 7 5.5060 -2.5136 7.4914 20 6 6.8593 -1.9571 7.4199 21 6 4.8272 -2.5126 8.6807 22 1 3.7773 -2.2605 8.7031 23 6 5.4886 -2.8355 9.8577 24 7 4.9006 -2.6380 11.0185 25 14 7.2133 -3.5503 9.7939 26 1 8.2075 -2.4476 9.8217 27 1 7.4250 -4.4374 10.9659 28 1 7.3783 -4.3343 8.5435 29 6 4.7789 -1.9854 5.2147 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9563 -0.8901 36 1 1.6767 1.9564 0.8900 37 1 1.0953 -2.1650 -0.7894 38 1 2.1027 -5.8304 0.8693 39 1 3.0639 -4.7577 2.8616 40 1 5.9584 -3.4879 3.1037 41 1 4.3924 -4.1645 2.5869 42 1 5.6489 -5.6749 4.1655 43 1 4.0562 -5.1809 4.7891 44 1 5.8206 -4.9936 6.5352 45 1 6.7178 -3.8626 5.4944 46 1 6.8094 -0.9231 7.0785 47 1 7.3191 -1.9918 8.4075 48 1 7.4563 -2.5423 6.7204 49 1 5.3626 -2.8640 11.8409 50 1 4.0959 -1.2036 5.5469 51 1 5.7654 -1.5588 5.0334 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027507601.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:21 Heat of formation + Delta-G solvation = -10.801115 kcal Electronic energy + Delta-G solvation = -31862.842511 eV Core-core repulsion = 27763.527360 eV Total energy + Delta-G solvation = -4099.315152 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.31032 -40.91558 -39.49928 -38.96803 -36.98246 -34.67489 -34.23103 -33.35356 -33.12095 -31.32551 -30.86312 -28.29022 -28.10817 -27.17735 -25.71545 -25.16985 -24.43326 -23.12448 -22.28198 -21.61096 -20.29716 -19.19028 -18.95002 -18.67934 -18.03271 -17.55140 -17.13490 -16.65432 -16.33100 -16.16739 -16.07461 -15.67756 -15.30530 -15.24745 -15.10461 -14.94521 -14.68104 -14.44371 -14.24209 -14.14107 -14.00508 -13.89121 -13.76130 -13.46468 -13.34126 -13.02938 -12.95829 -12.74774 -12.60668 -12.20573 -12.07638 -12.03669 -11.90690 -11.89558 -11.83074 -11.66298 -11.39198 -11.31149 -10.76312 -10.73252 -10.36084 -9.79025 -9.51536 -8.73559 -8.19889 -5.73545 -0.37395 0.03712 1.30428 1.40394 1.53707 1.67193 1.81022 2.01642 2.39583 2.66639 3.08899 3.20633 3.30177 3.39444 3.57967 3.68984 3.82761 3.92858 3.93241 3.96944 4.00455 4.06228 4.08403 4.18231 4.32713 4.35267 4.48130 4.52539 4.58272 4.63462 4.67656 4.74447 4.75025 4.77276 4.81481 4.81807 4.85314 4.86251 4.94866 5.02350 5.14151 5.18523 5.21143 5.38166 5.42036 5.43821 5.46817 5.91429 6.13643 6.19066 6.33867 6.80327 6.92719 7.03146 7.54788 7.96738 8.98495 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017086 B = 0.002793 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.396589 B =10023.683569 C =10910.306501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.061 3.939 3 C -0.146 4.146 4 O -0.311 6.311 5 C 0.118 3.882 6 C 0.019 3.981 7 N -0.445 5.445 8 C 0.060 3.940 9 C -0.102 4.102 10 C -0.144 4.144 11 C 0.554 3.446 12 O -0.571 6.571 13 N -0.597 5.597 14 C 0.077 3.923 15 C -0.125 4.125 16 C -0.130 4.130 17 C 0.168 3.832 18 H 0.045 0.955 19 N -0.617 5.617 20 C 0.100 3.900 21 C -0.265 4.265 22 H 0.027 0.973 23 C -0.028 4.028 24 N -0.961 5.961 25 Si 0.974 3.026 26 H -0.273 1.273 27 H -0.312 1.312 28 H -0.243 1.243 29 C 0.115 3.885 30 H 0.104 0.896 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.097 0.903 34 H 0.058 0.942 35 H 0.110 0.890 36 H 0.051 0.949 37 H 0.187 0.813 38 H 0.203 0.797 39 H 0.179 0.821 40 H 0.085 0.915 41 H 0.126 0.874 42 H 0.115 0.885 43 H 0.068 0.932 44 H 0.054 0.946 45 H 0.071 0.929 46 H 0.023 0.977 47 H 0.033 0.967 48 H 0.067 0.933 49 H 0.265 0.735 50 H 0.050 0.950 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.429 -4.311 -30.612 30.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.006 3.994 3 C -0.203 4.203 4 O -0.222 6.222 5 C 0.068 3.932 6 C -0.140 4.140 7 N -0.155 5.155 8 C -0.096 4.096 9 C -0.122 4.122 10 C -0.156 4.156 11 C 0.343 3.657 12 O -0.450 6.450 13 N -0.330 5.330 14 C -0.043 4.043 15 C -0.163 4.163 16 C -0.169 4.169 17 C 0.061 3.939 18 H 0.063 0.937 19 N -0.341 5.341 20 C -0.043 4.043 21 C -0.395 4.395 22 H 0.045 0.955 23 C -0.223 4.223 24 N -0.605 5.605 25 Si 0.802 3.198 26 H -0.201 1.201 27 H -0.242 1.242 28 H -0.167 1.167 29 C -0.009 4.009 30 H 0.122 0.878 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.115 0.885 34 H 0.077 0.923 35 H 0.128 0.872 36 H 0.070 0.930 37 H 0.204 0.796 38 H 0.219 0.781 39 H 0.196 0.804 40 H 0.104 0.896 41 H 0.143 0.857 42 H 0.134 0.866 43 H 0.087 0.913 44 H 0.073 0.927 45 H 0.089 0.911 46 H 0.041 0.959 47 H 0.051 0.949 48 H 0.086 0.914 49 H 0.073 0.927 50 H 0.069 0.931 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.953 -4.017 -30.780 31.103 hybrid contribution 0.619 0.862 1.932 2.204 sum -1.334 -3.156 -28.848 29.051 Atomic orbital electron populations 1.22429 0.93857 1.03263 1.04125 1.22930 0.95487 0.94504 0.86432 1.21876 1.01792 0.92786 1.03875 1.86339 1.79707 1.14931 1.41250 1.20292 0.93832 0.84488 0.94591 1.23304 1.02053 0.91057 0.97635 1.67462 1.12575 1.06647 1.28769 1.23200 0.95511 1.02140 0.88757 1.22764 0.96977 0.91588 1.00840 1.19798 1.05691 0.94952 0.95158 1.18478 0.80150 0.83853 0.83182 1.90787 1.61792 1.25506 1.66918 1.48067 1.28663 1.31438 1.24801 1.22768 0.99065 0.84559 0.97906 1.21933 1.02233 0.98247 0.93876 1.21984 0.99636 0.97393 0.97868 1.20797 0.95996 0.92002 0.85076 0.93684 1.44055 1.14921 1.69502 1.05666 1.21508 0.86177 0.97087 0.99556 1.18615 0.94475 1.41351 0.85042 0.95496 1.26347 1.03466 0.97875 0.94624 1.69940 1.40817 1.51691 0.98062 0.85476 0.79165 0.78027 0.77154 1.20060 1.24157 1.16689 1.21921 0.98820 0.96543 0.83643 0.87756 0.91958 0.92914 0.88541 0.92317 0.87187 0.92986 0.79639 0.78061 0.80419 0.89627 0.85686 0.86642 0.91331 0.92719 0.91060 0.95925 0.94928 0.91413 0.92663 0.93121 0.90858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.48 9.10 71.98 0.66 -1.83 16 2 C 0.06 1.01 2.86 30.60 0.09 1.10 16 3 C -0.15 -2.18 9.56 71.98 0.69 -1.49 16 4 O -0.31 -8.30 8.58 -73.88 -0.63 -8.93 16 5 C 0.12 2.88 6.57 22.95 0.15 3.03 16 6 C 0.02 0.35 9.31 84.89 0.79 1.14 16 7 N -0.44 -7.99 10.32 -195.58 -2.02 -10.01 16 8 C 0.06 0.85 11.16 84.62 0.94 1.79 16 9 C -0.10 -1.76 7.52 22.62 0.17 -1.59 16 10 C -0.14 -3.72 5.47 -19.81 -0.11 -3.83 16 11 C 0.55 18.77 7.32 86.78 0.64 19.41 16 12 O -0.57 -25.11 15.46 11.99 0.19 -24.93 16 13 N -0.60 -17.79 2.97 -822.30 -2.44 -20.24 16 14 C 0.08 1.47 5.57 86.36 0.48 1.95 16 15 C -0.12 -2.37 5.77 30.67 0.18 -2.19 16 16 C -0.13 -3.79 5.10 30.62 0.16 -3.64 16 17 C 0.17 6.61 2.75 45.07 0.12 6.73 16 18 H 0.04 2.01 7.89 -2.38 -0.02 1.99 16 19 N -0.62 -29.37 2.37 -702.35 -1.67 -31.04 16 20 C 0.10 4.15 8.14 127.77 1.04 5.19 16 21 C -0.26 -15.65 9.90 84.03 0.83 -14.81 16 22 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 23 C -0.03 -1.64 5.43 84.86 0.46 -1.18 16 24 N -0.96 -61.84 13.97 21.65 0.30 -61.54 16 25 Si 0.97 46.30 24.67 68.60 1.69 47.99 16 26 H -0.27 -12.33 6.61 99.48 0.66 -11.67 16 27 H -0.31 -15.12 7.11 99.48 0.71 -14.41 16 28 H -0.24 -10.47 7.04 99.48 0.70 -9.77 16 29 C 0.12 4.22 5.78 86.36 0.50 4.72 16 30 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 0.87 6.54 -2.39 -0.02 0.85 16 32 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.10 1.09 6.56 -2.39 -0.02 1.07 16 34 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.19 2.39 5.32 -2.91 -0.02 2.38 16 38 H 0.20 1.29 8.06 -2.91 -0.02 1.27 16 39 H 0.18 2.31 5.24 -2.91 -0.02 2.29 16 40 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.13 1.77 3.46 -2.39 -0.01 1.76 16 42 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.07 1.34 7.74 -2.39 -0.02 1.32 16 44 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 45 H 0.07 1.91 6.76 -2.39 -0.02 1.89 16 46 H 0.02 0.90 8.13 -2.39 -0.02 0.88 16 47 H 0.03 1.46 3.09 -2.39 -0.01 1.45 16 48 H 0.07 2.29 6.49 -2.39 -0.02 2.28 16 49 H 0.26 16.01 8.31 -92.71 -0.77 15.23 16 50 H 0.05 2.27 7.03 -2.39 -0.02 2.26 16 51 H 0.07 2.50 7.50 -2.39 -0.02 2.48 16 Total: -1.00 -83.95 387.74 4.09 -79.86 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.89 Total: 14.33 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: 7.78 Total: 14.50 kcal Atomic # 7 Polarization: -117.00 SS G_CDS: -5.83 Total: -122.82 kcal Atomic # 8 Polarization: -33.41 SS G_CDS: -0.45 Total: -33.86 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 1.69 Total: 47.99 kcal Total: -83.95 4.09 -79.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027507601.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.058 kcal (2) G-P(sol) polarization free energy of solvation -83.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds