Wall clock time and date at job start Wed Apr 1 2020 04:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47007 * 2 1 4 4 O 1.42898 * 109.47147 * 120.00305 * 2 1 3 5 5 C 1.35916 * 116.99842 * 153.37743 * 4 2 1 6 6 C 1.38852 * 120.40348 * 181.10329 * 5 4 2 7 7 N 1.31882 * 120.99803 * 179.97438 * 6 5 4 8 8 C 1.31686 * 121.94315 * 359.70725 * 7 6 5 9 9 C 1.39519 * 120.68702 * 0.57914 * 8 7 6 10 10 C 1.47863 * 120.52773 * 179.70312 * 9 8 7 11 11 O 1.21543 * 119.99866 * 40.80376 * 10 9 8 12 12 N 1.34774 * 119.99706 * 220.79856 * 10 9 8 13 13 C 1.46931 * 120.63310 * 5.32590 * 12 10 9 14 14 C 1.53195 * 108.77291 * 126.40973 * 13 12 10 15 15 C 1.53044 * 109.31332 * 54.63742 * 14 13 12 16 16 C 1.53042 * 109.53813 * 298.63417 * 15 14 13 17 17 H 1.09004 * 109.49531 * 301.38159 * 16 15 14 18 18 N 1.46500 * 109.49845 * 181.31990 * 16 15 14 19 19 C 1.46499 * 119.99573 * 300.26768 * 18 16 15 20 20 C 1.36934 * 120.00150 * 119.99667 * 18 16 15 21 21 H 1.07995 * 120.00273 * 344.48763 * 20 18 16 22 22 C 1.38811 * 119.99854 * 164.48230 * 20 18 16 23 23 N 1.31617 * 120.00401 * 336.49461 * 22 20 18 24 24 Si 1.86800 * 120.00018 * 156.48944 * 22 20 18 25 25 H 1.48502 * 109.47077 * 84.99892 * 24 22 20 26 26 H 1.48499 * 109.47222 * 204.99847 * 24 22 20 27 27 H 1.48503 * 109.46908 * 325.00338 * 24 22 20 28 28 C 1.46928 * 120.62779 * 185.34463 * 12 10 9 29 29 C 1.38843 * 120.41107 * 1.07789 * 5 4 2 30 30 H 1.09004 * 109.46801 * 299.99915 * 1 2 3 31 31 H 1.09004 * 109.47110 * 59.99798 * 1 2 3 32 32 H 1.08998 * 109.47561 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46801 * 240.00084 * 2 1 3 34 34 H 1.09006 * 109.46991 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.47350 * 300.00055 * 3 2 1 36 36 H 1.08996 * 109.47481 * 60.00159 * 3 2 1 37 37 H 1.07997 * 119.50408 * 359.95636 * 6 5 4 38 38 H 1.07997 * 119.65421 * 180.31208 * 8 7 6 39 39 H 1.08997 * 109.58642 * 6.62684 * 13 12 10 40 40 H 1.08994 * 109.58265 * 246.19691 * 13 12 10 41 41 H 1.08993 * 109.50248 * 294.68467 * 14 13 12 42 42 H 1.09000 * 109.49285 * 174.58565 * 14 13 12 43 43 H 1.08997 * 109.46308 * 178.61291 * 15 14 13 44 44 H 1.09005 * 109.46190 * 58.64910 * 15 14 13 45 45 H 1.09002 * 109.47338 * 268.07491 * 19 18 16 46 46 H 1.09002 * 109.47387 * 28.07127 * 19 18 16 47 47 H 1.09000 * 109.46754 * 148.07080 * 19 18 16 48 48 H 0.97000 * 120.00384 * 180.02562 * 23 22 20 49 49 H 1.09000 * 109.58856 * 113.80446 * 28 12 10 50 50 H 1.08999 * 109.58930 * 353.37725 * 28 12 10 51 51 H 1.08006 * 120.87455 * 0.02562 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 3.2327 -1.2541 1.0866 6 6 3.7546 -1.9468 2.1710 7 7 4.9430 -2.5148 2.1059 8 6 5.6835 -2.4586 1.0185 9 6 5.2356 -1.7770 -0.1135 10 6 6.0728 -1.7105 -1.3305 11 8 6.6880 -2.6918 -1.6992 12 7 6.1537 -0.5619 -2.0308 13 6 5.5111 0.6634 -1.5361 14 6 6.5557 1.7830 -1.4881 15 6 7.2070 1.9270 -2.8656 16 6 7.9148 0.6216 -3.2360 17 1 8.6650 0.3876 -2.4806 18 7 8.5645 0.7708 -4.5405 19 6 7.7644 1.0931 -5.7246 20 6 9.9203 0.6145 -4.6521 21 1 10.5405 0.6317 -3.7681 22 6 10.4976 0.4338 -5.9014 23 7 9.7790 -0.0426 -6.8959 24 14 12.2946 0.8669 -6.1715 25 1 13.1463 -0.2812 -5.7694 26 1 12.5200 1.1715 -7.6073 27 1 12.6459 2.0547 -5.3523 28 6 6.8858 -0.5112 -3.3037 29 6 3.9789 -1.1621 -0.0806 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 3.1787 -2.0213 3.0816 38 1 6.6494 -2.9414 1.0042 39 1 5.1152 0.4900 -0.5355 40 1 4.7011 0.9478 -2.2077 41 1 7.3182 1.5378 -0.7490 42 1 6.0716 2.7206 -1.2148 43 1 7.9332 2.7394 -2.8408 44 1 6.4405 2.1478 -3.6085 45 1 7.4598 0.1708 -6.2194 46 1 6.8791 1.6533 -5.4235 47 1 8.3589 1.6950 -6.4119 48 1 10.1825 -0.1693 -7.7688 49 1 6.1879 -0.3225 -4.1194 50 1 7.3968 -1.4596 -3.4693 51 1 3.5995 -0.6300 -0.9405 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027519311.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:51 Heat of formation + Delta-G solvation = -4.317176 kcal Electronic energy + Delta-G solvation = -31779.813945 eV Core-core repulsion = 27680.779958 eV Total energy + Delta-G solvation = -4099.033987 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.34629 -39.87061 -38.70753 -37.42103 -35.25304 -33.78318 -33.12502 -32.05786 -31.31490 -30.46601 -28.82209 -27.78590 -26.06950 -25.93330 -24.50275 -24.08257 -23.27418 -21.77233 -21.47644 -20.31583 -19.05136 -18.11771 -17.49109 -17.12100 -16.78558 -16.52684 -16.09008 -15.67047 -15.24297 -14.86622 -14.63190 -14.47787 -14.15029 -13.99803 -13.79460 -13.63317 -13.52031 -13.38227 -12.96259 -12.75055 -12.73924 -12.61899 -12.56159 -12.43070 -12.26634 -11.98982 -11.52121 -11.28110 -11.16552 -11.15373 -10.87195 -10.67311 -10.47327 -10.41901 -10.36262 -10.24475 -9.95353 -9.84796 -9.83535 -9.50186 -8.76814 -8.60067 -8.37923 -6.87849 -5.79343 -3.13363 0.48570 0.90282 2.60687 2.74533 3.00693 3.38985 3.45897 3.48468 3.51822 4.08078 4.19250 4.30584 4.34707 4.43084 4.48026 4.52180 4.65321 4.76418 4.84042 5.02447 5.05369 5.08553 5.18976 5.24946 5.27648 5.33835 5.35127 5.43753 5.46790 5.52411 5.63409 5.65844 5.68357 5.71145 5.81465 5.89947 6.03581 6.08132 6.15192 6.29204 6.41650 6.56068 6.68537 6.83072 6.86084 6.90089 7.30089 7.47425 7.58999 7.62673 7.80173 8.18991 8.32579 9.17918 9.83447 10.29549 11.27938 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016913 B = 0.002697 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.119438 B =10380.314204 C =11251.965374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.071 3.929 3 C -0.182 4.182 4 O -0.301 6.301 5 C 0.077 3.923 6 C 0.090 3.910 7 N -0.447 5.447 8 C 0.111 3.889 9 C -0.130 4.130 10 C 0.556 3.444 11 O -0.525 6.525 12 N -0.597 5.597 13 C 0.098 3.902 14 C -0.131 4.131 15 C -0.133 4.133 16 C 0.169 3.831 17 H 0.066 0.934 18 N -0.590 5.590 19 C 0.159 3.841 20 C -0.259 4.259 21 H 0.071 0.929 22 C 0.003 3.997 23 N -0.900 5.900 24 Si 0.898 3.102 25 H -0.287 1.287 26 H -0.290 1.290 27 H -0.281 1.281 28 C 0.097 3.903 29 C -0.141 4.141 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.167 0.833 38 H 0.169 0.831 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.059 0.941 45 H 0.022 0.978 46 H 0.001 0.999 47 H 0.050 0.950 48 H 0.253 0.747 49 H 0.064 0.936 50 H 0.094 0.906 51 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.823 3.631 15.551 25.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.015 3.985 3 C -0.239 4.239 4 O -0.214 6.214 5 C 0.029 3.971 6 C -0.070 4.070 7 N -0.155 5.155 8 C -0.046 4.046 9 C -0.135 4.135 10 C 0.342 3.658 11 O -0.402 6.402 12 N -0.330 5.330 13 C -0.025 4.025 14 C -0.170 4.170 15 C -0.173 4.173 16 C 0.060 3.940 17 H 0.084 0.916 18 N -0.312 5.312 19 C 0.014 3.986 20 C -0.388 4.388 21 H 0.089 0.911 22 C -0.196 4.196 23 N -0.544 5.544 24 Si 0.728 3.272 25 H -0.214 1.214 26 H -0.216 1.216 27 H -0.207 1.207 28 C -0.026 4.026 29 C -0.168 4.168 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.184 0.816 38 H 0.186 0.814 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.078 0.922 45 H 0.041 0.959 46 H 0.020 0.980 47 H 0.068 0.932 48 H 0.063 0.937 49 H 0.082 0.918 50 H 0.113 0.887 51 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -19.245 2.655 15.987 25.159 hybrid contribution 0.623 0.758 -1.350 1.669 sum -18.622 3.413 14.636 23.930 Atomic orbital electron populations 1.21861 0.92000 1.03350 1.03336 1.22568 0.95847 0.92840 0.87223 1.22402 1.02227 0.95582 1.03670 1.86163 1.29488 1.66991 1.38769 1.20013 0.86356 0.95560 0.95129 1.22410 0.92388 0.94770 0.97394 1.67822 1.04518 1.16764 1.26352 1.22841 0.99857 0.95093 0.86847 1.20941 0.95544 1.00251 0.96762 1.18110 0.81392 0.83517 0.82783 1.90831 1.44947 1.35354 1.69031 1.48213 1.52881 1.08585 1.23323 1.22079 0.95806 0.85095 0.99516 1.21911 0.98365 0.97403 0.99289 1.22093 1.00020 1.00480 0.94692 1.20601 0.92782 0.90930 0.89712 0.91557 1.44008 1.04321 1.80557 1.02284 1.20787 0.91708 0.97670 0.88429 1.19195 0.81746 1.44640 0.93211 0.91099 1.24817 0.97783 0.99989 0.96971 1.70160 1.36121 1.45666 1.02435 0.86375 0.85266 0.78605 0.76969 1.21362 1.21586 1.20674 1.22649 0.94692 1.03178 0.82093 1.21998 0.94849 1.01486 0.98483 0.91259 0.90237 0.91551 0.90778 0.91814 0.90482 0.91087 0.81628 0.81427 0.89977 0.91488 0.91570 0.91158 0.91468 0.92229 0.95946 0.98012 0.93173 0.93686 0.91807 0.88749 0.83382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.56 37.16 0.36 -0.38 16 2 C 0.07 0.47 2.85 -26.73 -0.08 0.39 16 3 C -0.18 -1.02 9.30 37.16 0.35 -0.68 16 4 O -0.30 -2.61 9.80 -19.48 -0.19 -2.80 16 5 C 0.08 0.75 6.63 -39.13 -0.26 0.49 16 6 C 0.09 0.90 11.13 -17.30 -0.19 0.71 16 7 N -0.45 -5.37 10.34 -12.80 -0.13 -5.50 16 8 C 0.11 1.42 10.81 -17.14 -0.19 1.23 16 9 C -0.13 -1.68 5.11 -104.84 -0.54 -2.21 16 10 C 0.56 8.97 7.34 -12.32 -0.09 8.88 16 11 O -0.52 -10.60 16.37 5.33 0.09 -10.52 16 12 N -0.60 -9.05 2.97 -173.87 -0.52 -9.57 16 13 C 0.10 1.11 4.96 -3.71 -0.02 1.09 16 14 C -0.13 -1.57 6.08 -26.61 -0.16 -1.73 16 15 C -0.13 -2.09 5.12 -26.69 -0.14 -2.22 16 16 C 0.17 3.34 2.74 -67.81 -0.19 3.15 16 17 H 0.07 1.40 7.82 -51.93 -0.41 1.00 16 18 N -0.59 -14.31 2.82 -173.35 -0.49 -14.80 16 19 C 0.16 3.74 7.99 59.85 0.48 4.21 16 20 C -0.26 -7.05 9.61 -15.06 -0.14 -7.20 16 21 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 22 C 0.00 0.09 4.85 -17.43 -0.08 0.00 16 23 N -0.90 -26.06 10.97 55.49 0.61 -25.45 16 24 Si 0.90 21.79 29.61 -169.99 -5.03 16.75 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 C 0.10 1.81 5.80 -3.71 -0.02 1.79 16 29 C -0.14 -1.47 5.86 -38.72 -0.23 -1.70 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.49 6.02 -51.93 -0.31 0.18 16 34 H 0.06 0.40 6.95 -51.93 -0.36 0.03 16 35 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.17 1.26 8.06 -52.49 -0.42 0.83 16 38 H 0.17 2.08 8.06 -52.49 -0.42 1.65 16 39 H 0.08 0.81 4.24 -51.93 -0.22 0.59 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 44 H 0.06 0.92 6.70 -51.93 -0.35 0.57 16 45 H 0.02 0.57 7.70 -51.93 -0.40 0.17 16 46 H 0.00 0.03 6.44 -51.93 -0.33 -0.31 16 47 H 0.05 1.29 6.90 -51.93 -0.36 0.93 16 48 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 49 H 0.06 1.18 7.52 -51.93 -0.39 0.79 16 50 H 0.09 2.10 7.00 -51.93 -0.36 1.73 16 51 H 0.15 1.33 4.47 -52.48 -0.23 1.10 16 LS Contribution 397.25 15.07 5.99 5.99 Total: -1.00 -32.14 397.25 -8.75 -40.89 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -7.92 Total: -0.83 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: -1.14 Total: 5.83 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: -0.53 Total: -55.32 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -0.10 Total: -13.31 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.14 -8.75 -40.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027519311.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.568 kcal (2) G-P(sol) polarization free energy of solvation -32.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds