Wall clock time and date at job start Wed Apr 1 2020 04:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47007 * 2 1 4 4 O 1.42898 * 109.47147 * 120.00305 * 2 1 3 5 5 C 1.35916 * 116.99842 * 153.37743 * 4 2 1 6 6 C 1.38852 * 120.40348 * 181.10329 * 5 4 2 7 7 N 1.31882 * 120.99803 * 179.97438 * 6 5 4 8 8 C 1.31686 * 121.94315 * 359.70725 * 7 6 5 9 9 C 1.39519 * 120.68702 * 0.57914 * 8 7 6 10 10 C 1.47863 * 120.52773 * 179.70312 * 9 8 7 11 11 O 1.21543 * 119.99866 * 40.80376 * 10 9 8 12 12 N 1.34774 * 119.99706 * 220.79856 * 10 9 8 13 13 C 1.46931 * 120.63310 * 5.32590 * 12 10 9 14 14 C 1.53195 * 108.77291 * 126.40973 * 13 12 10 15 15 C 1.53044 * 109.31332 * 54.63742 * 14 13 12 16 16 C 1.53042 * 109.53813 * 298.63417 * 15 14 13 17 17 H 1.09004 * 109.49531 * 301.38159 * 16 15 14 18 18 N 1.46500 * 109.49845 * 181.31990 * 16 15 14 19 19 C 1.46499 * 119.99573 * 300.26768 * 18 16 15 20 20 C 1.36934 * 120.00150 * 119.99667 * 18 16 15 21 21 H 1.07995 * 120.00273 * 344.48763 * 20 18 16 22 22 C 1.38811 * 119.99854 * 164.48230 * 20 18 16 23 23 N 1.31617 * 120.00401 * 336.49461 * 22 20 18 24 24 Si 1.86800 * 120.00018 * 156.48944 * 22 20 18 25 25 H 1.48502 * 109.47077 * 84.99892 * 24 22 20 26 26 H 1.48499 * 109.47222 * 204.99847 * 24 22 20 27 27 H 1.48503 * 109.46908 * 325.00338 * 24 22 20 28 28 C 1.46928 * 120.62779 * 185.34463 * 12 10 9 29 29 C 1.38843 * 120.41107 * 1.07789 * 5 4 2 30 30 H 1.09004 * 109.46801 * 299.99915 * 1 2 3 31 31 H 1.09004 * 109.47110 * 59.99798 * 1 2 3 32 32 H 1.08998 * 109.47561 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46801 * 240.00084 * 2 1 3 34 34 H 1.09006 * 109.46991 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.47350 * 300.00055 * 3 2 1 36 36 H 1.08996 * 109.47481 * 60.00159 * 3 2 1 37 37 H 1.07997 * 119.50408 * 359.95636 * 6 5 4 38 38 H 1.07997 * 119.65421 * 180.31208 * 8 7 6 39 39 H 1.08997 * 109.58642 * 6.62684 * 13 12 10 40 40 H 1.08994 * 109.58265 * 246.19691 * 13 12 10 41 41 H 1.08993 * 109.50248 * 294.68467 * 14 13 12 42 42 H 1.09000 * 109.49285 * 174.58565 * 14 13 12 43 43 H 1.08997 * 109.46308 * 178.61291 * 15 14 13 44 44 H 1.09005 * 109.46190 * 58.64910 * 15 14 13 45 45 H 1.09002 * 109.47338 * 268.07491 * 19 18 16 46 46 H 1.09002 * 109.47387 * 28.07127 * 19 18 16 47 47 H 1.09000 * 109.46754 * 148.07080 * 19 18 16 48 48 H 0.97000 * 120.00384 * 180.02562 * 23 22 20 49 49 H 1.09000 * 109.58856 * 113.80446 * 28 12 10 50 50 H 1.08999 * 109.58930 * 353.37725 * 28 12 10 51 51 H 1.08006 * 120.87455 * 0.02562 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 3.2327 -1.2541 1.0866 6 6 3.7546 -1.9468 2.1710 7 7 4.9430 -2.5148 2.1059 8 6 5.6835 -2.4586 1.0185 9 6 5.2356 -1.7770 -0.1135 10 6 6.0728 -1.7105 -1.3305 11 8 6.6880 -2.6918 -1.6992 12 7 6.1537 -0.5619 -2.0308 13 6 5.5111 0.6634 -1.5361 14 6 6.5557 1.7830 -1.4881 15 6 7.2070 1.9270 -2.8656 16 6 7.9148 0.6216 -3.2360 17 1 8.6650 0.3876 -2.4806 18 7 8.5645 0.7708 -4.5405 19 6 7.7644 1.0931 -5.7246 20 6 9.9203 0.6145 -4.6521 21 1 10.5405 0.6317 -3.7681 22 6 10.4976 0.4338 -5.9014 23 7 9.7790 -0.0426 -6.8959 24 14 12.2946 0.8669 -6.1715 25 1 13.1463 -0.2812 -5.7694 26 1 12.5200 1.1715 -7.6073 27 1 12.6459 2.0547 -5.3523 28 6 6.8858 -0.5112 -3.3037 29 6 3.9789 -1.1621 -0.0806 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 3.1787 -2.0213 3.0816 38 1 6.6494 -2.9414 1.0042 39 1 5.1152 0.4900 -0.5355 40 1 4.7011 0.9478 -2.2077 41 1 7.3182 1.5378 -0.7490 42 1 6.0716 2.7206 -1.2148 43 1 7.9332 2.7394 -2.8408 44 1 6.4405 2.1478 -3.6085 45 1 7.4598 0.1708 -6.2194 46 1 6.8791 1.6533 -5.4235 47 1 8.3589 1.6950 -6.4119 48 1 10.1825 -0.1693 -7.7688 49 1 6.1879 -0.3225 -4.1194 50 1 7.3968 -1.4596 -3.4693 51 1 3.5995 -0.6300 -0.9405 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027519311.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:50 Heat of formation + Delta-G solvation = -24.178239 kcal Electronic energy + Delta-G solvation = -31780.675185 eV Core-core repulsion = 27680.779958 eV Total energy + Delta-G solvation = -4099.895227 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.27390 -40.97080 -39.56880 -38.82273 -36.89896 -34.47711 -34.27419 -33.30182 -32.90501 -31.27976 -30.42474 -28.17198 -28.06334 -27.08426 -25.53706 -25.34460 -24.50094 -23.12896 -22.12008 -21.51301 -20.38563 -19.16593 -18.72913 -18.43570 -17.91006 -17.53769 -17.15399 -16.99724 -16.48379 -16.15441 -15.78869 -15.44963 -15.39812 -15.16196 -15.00702 -14.94160 -14.60020 -14.37603 -14.15174 -13.96293 -13.88034 -13.63409 -13.43957 -13.30035 -13.07011 -13.03652 -12.83045 -12.80409 -12.51091 -12.26292 -12.20685 -12.12845 -11.95143 -11.79429 -11.71810 -11.70547 -11.47178 -11.45311 -10.86537 -10.60985 -10.57022 -9.83046 -9.53081 -8.86342 -7.89970 -5.25734 -0.43600 0.05144 1.44313 1.45313 1.49859 1.55525 1.79256 2.01166 2.50252 2.59629 3.11594 3.22978 3.41415 3.51776 3.56877 3.67570 3.77420 3.89704 3.97295 3.99651 4.00893 4.04615 4.16826 4.18593 4.31373 4.35087 4.50555 4.61894 4.71244 4.72019 4.76065 4.77269 4.82139 4.84048 4.89576 4.90768 4.92851 4.98587 5.10363 5.23749 5.25743 5.29692 5.32696 5.37861 5.40434 5.52807 5.58537 5.68383 6.15500 6.25238 6.27399 6.74804 6.93243 7.10819 7.84752 8.24966 9.15342 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016913 B = 0.002697 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.119438 B =10380.314204 C =11251.965374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.061 3.939 3 C -0.181 4.181 4 O -0.302 6.302 5 C 0.089 3.911 6 C 0.094 3.906 7 N -0.459 5.459 8 C 0.100 3.900 9 C -0.140 4.140 10 C 0.554 3.446 11 O -0.579 6.579 12 N -0.593 5.593 13 C 0.094 3.906 14 C -0.123 4.123 15 C -0.121 4.121 16 C 0.166 3.834 17 H 0.042 0.958 18 N -0.607 5.607 19 C 0.175 3.825 20 C -0.268 4.268 21 H 0.066 0.934 22 C -0.050 4.050 23 N -0.931 5.931 24 Si 0.961 3.039 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.271 1.271 28 C 0.113 3.887 29 C -0.133 4.133 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.194 0.806 38 H 0.159 0.841 39 H 0.104 0.896 40 H 0.097 0.903 41 H 0.057 0.943 42 H 0.112 0.888 43 H 0.058 0.942 44 H 0.070 0.930 45 H -0.006 1.006 46 H 0.042 0.958 47 H 0.023 0.977 48 H 0.249 0.751 49 H 0.069 0.931 50 H 0.047 0.953 51 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.549 5.973 17.374 29.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.006 3.994 3 C -0.238 4.238 4 O -0.215 6.215 5 C 0.040 3.960 6 C -0.065 4.065 7 N -0.167 5.167 8 C -0.057 4.057 9 C -0.145 4.145 10 C 0.342 3.658 11 O -0.459 6.459 12 N -0.325 5.325 13 C -0.027 4.027 14 C -0.161 4.161 15 C -0.161 4.161 16 C 0.058 3.942 17 H 0.061 0.939 18 N -0.329 5.329 19 C 0.031 3.969 20 C -0.398 4.398 21 H 0.084 0.916 22 C -0.246 4.246 23 N -0.577 5.577 24 Si 0.790 3.210 25 H -0.215 1.215 26 H -0.216 1.216 27 H -0.197 1.197 28 C -0.012 4.012 29 C -0.159 4.159 30 H 0.090 0.910 31 H 0.114 0.886 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.112 0.888 36 H 0.090 0.910 37 H 0.210 0.790 38 H 0.176 0.824 39 H 0.122 0.878 40 H 0.115 0.885 41 H 0.076 0.924 42 H 0.130 0.870 43 H 0.077 0.923 44 H 0.089 0.911 45 H 0.012 0.988 46 H 0.060 0.940 47 H 0.041 0.959 48 H 0.058 0.942 49 H 0.087 0.913 50 H 0.066 0.934 51 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -22.006 5.042 17.860 28.787 hybrid contribution 1.327 0.026 -1.796 2.234 sum -20.679 5.068 16.064 26.671 Atomic orbital electron populations 1.21892 0.90856 1.03374 1.04296 1.22862 0.96804 0.93337 0.86409 1.22421 1.02034 0.94788 1.04591 1.86193 1.28487 1.66793 1.39994 1.19961 0.86648 0.94880 0.94485 1.22895 0.91690 0.93468 0.98492 1.67854 1.05432 1.17513 1.25921 1.22752 1.00053 0.95528 0.87383 1.20573 0.96359 1.02358 0.95221 1.18618 0.80941 0.82863 0.83334 1.90800 1.47327 1.37288 1.70518 1.48200 1.52307 1.10000 1.21979 1.22442 0.96091 0.82845 1.01326 1.21897 0.98308 0.99541 0.96389 1.21917 0.99790 0.96984 0.97365 1.20771 0.92647 0.93662 0.87080 0.93946 1.44225 1.03849 1.80846 1.03980 1.20531 0.92389 0.96265 0.87756 1.19480 0.83538 1.43632 0.93131 0.91573 1.25549 1.01632 1.00498 0.96897 1.70296 1.37653 1.47216 1.02567 0.85388 0.80687 0.78315 0.76657 1.21513 1.21646 1.19663 1.22109 0.94600 1.00295 0.84166 1.22080 0.93569 1.00882 0.99371 0.91032 0.88580 0.92030 0.90628 0.92063 0.88847 0.91007 0.78963 0.82394 0.87836 0.88488 0.92441 0.87007 0.92286 0.91106 0.98807 0.93951 0.95858 0.94164 0.91260 0.93410 0.81622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.56 71.98 0.69 -0.28 16 2 C 0.06 0.57 2.85 30.59 0.09 0.66 16 3 C -0.18 -1.24 9.30 71.98 0.67 -0.57 16 4 O -0.30 -4.14 9.80 -92.61 -0.91 -5.05 16 5 C 0.09 1.46 6.63 22.56 0.15 1.61 16 6 C 0.09 1.65 11.13 84.83 0.94 2.59 16 7 N -0.46 -10.47 10.34 -194.40 -2.01 -12.48 16 8 C 0.10 2.54 10.81 85.02 0.92 3.46 16 9 C -0.14 -3.51 5.11 -20.01 -0.10 -3.61 16 10 C 0.55 18.21 7.34 86.79 0.64 18.85 16 11 O -0.58 -24.86 16.37 -3.85 -0.06 -24.92 16 12 N -0.59 -17.62 2.97 -822.29 -2.44 -20.07 16 13 C 0.09 1.80 4.96 86.36 0.43 2.23 16 14 C -0.12 -2.50 6.08 30.67 0.19 -2.31 16 15 C -0.12 -3.53 5.12 30.62 0.16 -3.38 16 16 C 0.17 6.64 2.74 45.07 0.12 6.76 16 17 H 0.04 1.86 7.82 -2.38 -0.02 1.85 16 18 N -0.61 -30.09 2.82 -702.34 -1.98 -32.08 16 19 C 0.18 8.37 7.99 127.77 1.02 9.39 16 20 C -0.27 -15.02 9.61 84.03 0.81 -14.21 16 21 H 0.07 3.68 7.83 -2.91 -0.02 3.66 16 22 C -0.05 -2.86 4.85 84.86 0.41 -2.45 16 23 N -0.93 -55.81 10.97 21.65 0.24 -55.57 16 24 Si 0.96 45.88 29.61 68.60 2.03 47.91 16 25 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 26 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 27 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 28 C 0.11 4.31 5.80 86.36 0.50 4.81 16 29 C -0.13 -2.41 5.86 22.83 0.13 -2.28 16 30 H 0.07 0.45 8.14 -2.38 -0.02 0.43 16 31 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.08 0.70 6.02 -2.38 -0.01 0.69 16 34 H 0.06 0.46 6.95 -2.38 -0.02 0.44 16 35 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.19 2.25 8.06 -2.91 -0.02 2.23 16 38 H 0.16 4.18 8.06 -2.91 -0.02 4.15 16 39 H 0.10 1.62 4.24 -2.39 -0.01 1.61 16 40 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.07 1.92 6.70 -2.38 -0.02 1.91 16 45 H -0.01 -0.34 7.70 -2.39 -0.02 -0.36 16 46 H 0.04 1.64 6.44 -2.39 -0.02 1.62 16 47 H 0.02 1.20 6.90 -2.39 -0.02 1.19 16 48 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 49 H 0.07 2.55 7.52 -2.39 -0.02 2.54 16 50 H 0.05 2.27 7.00 -2.39 -0.02 2.25 16 51 H 0.17 2.36 4.47 -2.91 -0.01 2.35 16 Total: -1.00 -74.50 397.25 3.56 -70.95 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: 0.93 Total: 10.06 kcal Atomic # 6 Polarization: 13.49 SS G_CDS: 7.76 Total: 21.26 kcal Atomic # 7 Polarization: -113.99 SS G_CDS: -6.20 Total: -120.19 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: -0.97 Total: -29.98 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -74.50 3.56 -70.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027519311.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.767 kcal (2) G-P(sol) polarization free energy of solvation -74.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds