Wall clock time and date at job start Wed Apr 1 2020 05:22:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.08999 * 109.46269 * 2 1
4 4 C 1.53107 * 109.46141 * 119.98619 * 2 1 3
5 5 C 1.53433 * 109.72387 * 189.86323 * 4 2 1
6 6 C 1.50600 * 108.31309 * 309.98862 * 5 4 2
7 7 O 1.33193 * 129.60191 * 196.79140 * 6 5 4
8 8 N 1.21428 * 111.56798 * 179.81479 * 7 6 5
9 9 C 1.31499 * 111.52645 * 0.03300 * 8 7 6
10 10 C 1.48333 * 127.15179 * 179.97438 * 9 8 7
11 11 O 1.21497 * 119.99770 * 186.22350 * 10 9 8
12 12 N 1.34769 * 120.00162 * 6.22051 * 10 9 8
13 13 C 1.46925 * 120.63223 * 175.13686 * 12 10 9
14 14 C 1.53195 * 108.89240 * 233.67570 * 13 12 10
15 15 C 1.53037 * 109.31366 * 305.29023 * 14 13 12
16 16 C 1.53040 * 109.53956 * 61.36573 * 15 14 13
17 17 H 1.09004 * 109.49404 * 58.58326 * 16 15 14
18 18 N 1.46490 * 109.50231 * 178.65109 * 16 15 14
19 19 C 1.46500 * 119.99809 * 59.99818 * 18 16 15
20 20 C 1.36939 * 120.00517 * 240.00448 * 18 16 15
21 21 H 1.08001 * 119.99622 * 24.85037 * 20 18 16
22 22 C 1.38807 * 119.99968 * 204.85861 * 20 18 16
23 23 N 1.31613 * 120.00411 * 5.80073 * 22 20 18
24 24 Si 1.86807 * 119.99944 * 185.80215 * 22 20 18
25 25 H 1.48492 * 109.47161 * 89.99667 * 24 22 20
26 26 H 1.48498 * 109.47340 * 210.00044 * 24 22 20
27 27 H 1.48505 * 109.46971 * 329.99702 * 24 22 20
28 28 C 1.47206 * 120.81634 * 355.27248 * 12 10 9
29 29 C 1.35376 * 123.76509 * 16.94925 * 6 5 4
30 30 C 1.50063 * 124.93220 * 359.71244 * 29 6 5
31 31 H 1.09005 * 109.47079 * 300.01547 * 1 2 3
32 32 H 1.08999 * 109.46928 * 60.01078 * 1 2 3
33 33 H 1.08991 * 109.47058 * 180.02562 * 1 2 3
34 34 H 1.08995 * 109.43022 * 69.78455 * 4 2 1
35 35 H 1.08999 * 109.39015 * 309.91174 * 4 2 1
36 36 H 1.09003 * 109.68946 * 190.28848 * 5 4 2
37 37 H 1.08999 * 109.70000 * 69.69856 * 5 4 2
38 38 H 1.09001 * 109.59028 * 113.81564 * 13 12 10
39 39 H 1.08999 * 109.58407 * 353.52911 * 13 12 10
40 40 H 1.09007 * 109.50010 * 65.24621 * 14 13 12
41 41 H 1.09007 * 109.49928 * 185.33429 * 14 13 12
42 42 H 1.08998 * 109.45837 * 181.38463 * 15 14 13
43 43 H 1.08996 * 109.45837 * 301.34514 * 15 14 13
44 44 H 1.09002 * 109.47046 * 95.04507 * 19 18 16
45 45 H 1.09009 * 109.47428 * 215.04099 * 19 18 16
46 46 H 1.08996 * 109.47285 * 335.04248 * 19 18 16
47 47 H 0.97005 * 120.00048 * 180.02562 * 23 22 20
48 48 H 1.08996 * 109.53265 * 6.54043 * 28 12 10
49 49 H 1.09002 * 109.68220 * 246.23115 * 28 12 10
50 50 H 1.09008 * 109.92006 * 256.79730 * 30 29 6
51 51 H 1.09003 * 109.59446 * 136.15475 * 30 29 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8932 1.0277 0.0000
4 6 2.0402 -0.7215 1.2504
5 6 3.5543 -0.5143 1.3863
6 6 4.1981 -0.8494 0.0667
7 8 5.4742 -1.1081 -0.2140
8 7 5.6327 -1.3431 -1.3948
9 6 4.4988 -1.2739 -2.0570
10 6 4.2944 -1.4967 -3.5092
11 8 3.2064 -1.2890 -4.0084
12 7 5.3156 -1.9296 -4.2748
13 6 5.1030 -2.2564 -5.6914
14 6 5.6121 -3.6771 -5.9544
15 6 7.0693 -3.7850 -5.4995
16 6 7.1578 -3.5108 -3.9964
17 1 6.5347 -4.2257 -3.4589
18 7 8.5483 -3.6459 -3.5558
19 6 9.5863 -2.7884 -4.1333
20 6 8.8781 -4.5737 -2.6041
21 1 8.2592 -5.4479 -2.4650
22 6 10.0075 -4.3907 -1.8183
23 7 10.6973 -3.2733 -1.9074
24 14 10.5487 -5.7304 -0.6342
25 1 11.4834 -6.6541 -1.3255
26 1 11.2327 -5.1144 0.5311
27 1 9.3598 -6.4876 -0.1667
28 6 6.6662 -2.0882 -3.7112
29 6 3.5189 -0.9374 -1.1010
30 6 2.0416 -0.7234 -1.2540
31 1 -0.3633 0.5141 0.8899
32 1 -0.3633 0.5137 -0.8901
33 1 -0.3633 -1.0276 0.0005
34 1 1.8261 -1.7870 1.1669
35 1 1.5387 -0.3188 2.1304
36 1 3.9465 -1.1703 2.1635
37 1 3.7615 0.5247 1.6427
38 1 5.6509 -1.5505 -6.3155
39 1 4.0395 -2.2005 -5.9236
40 1 5.0036 -4.3905 -5.3985
41 1 5.5466 -3.8956 -7.0204
42 1 7.4415 -4.7880 -5.7082
43 1 7.6728 -3.0545 -6.0380
44 1 9.7406 -1.9216 -3.4906
45 1 10.5171 -3.3497 -4.2159
46 1 9.2736 -2.4557 -5.1230
47 1 11.4868 -3.1456 -1.3585
48 1 6.6336 -1.9219 -2.6344
49 1 7.3430 -1.3685 -4.1717
50 1 1.5358 -1.6836 -1.3565
51 1 1.8502 -0.1113 -2.1354
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001027638367.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:22:48
Heat of formation + Delta-G solvation = 33.955294 kcal
Electronic energy + Delta-G solvation = -32325.188446 eV
Core-core repulsion = 28227.814078 eV
Total energy + Delta-G solvation = -4097.374368 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.02 seconds
Orbital eigenvalues (eV)
-46.21614 -41.29538 -39.28287 -38.86742 -36.70215 -35.27425 -33.92725 -33.40736
-33.01842 -31.30076 -30.39246 -28.26425 -28.06432 -27.10600 -25.37345 -24.97155
-24.48757 -23.08788 -22.74794 -21.41012 -20.63123 -19.98860 -18.96199 -18.81952
-18.23498 -17.96584 -17.17052 -16.89792 -16.29343 -16.08479 -15.72430 -15.44411
-15.30468 -15.17121 -14.94941 -14.78445 -14.49358 -14.34594 -14.31062 -14.05168
-13.78210 -13.68283 -13.51945 -13.12700 -12.96386 -12.80237 -12.62965 -12.54132
-12.36490 -12.24870 -12.18444 -12.07665 -11.89831 -11.70380 -11.64369 -11.63375
-11.57786 -11.36434 -11.24243 -11.09588 -10.64503 -10.13997 -9.86434 -8.75400
-7.82953 -5.34556 -0.01169 0.60767 1.44013 1.44876 1.53848 1.61819
1.93654 1.97189 2.47756 2.76107 3.28992 3.33500 3.54552 3.62955
3.80370 3.89571 3.93551 3.94196 4.00502 4.08009 4.17499 4.19552
4.24097 4.29604 4.44711 4.52782 4.53931 4.67917 4.72889 4.75032
4.79221 4.87613 4.91054 4.94017 4.95943 4.98760 5.02631 5.05424
5.13704 5.18162 5.27273 5.31170 5.34267 5.41568 5.42174 5.52726
5.53139 5.61345 5.72584 6.06876 6.32839 6.72861 7.07491 7.14827
7.83994 8.28706 9.19144
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.010713 B = 0.003751 C = 0.002960
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2613.078146 B = 7462.391565 C = 9456.136404
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.091 4.091
3 H 0.079 0.921
4 C -0.109 4.109
5 C -0.036 4.036
6 C -0.026 4.026
7 O 0.114 5.886
8 N -0.349 5.349
9 C -0.042 4.042
10 C 0.594 3.406
11 O -0.548 6.548
12 N -0.590 5.590
13 C 0.108 3.892
14 C -0.118 4.118
15 C -0.125 4.125
16 C 0.172 3.828
17 H 0.041 0.959
18 N -0.605 5.605
19 C 0.182 3.818
20 C -0.266 4.266
21 H 0.063 0.937
22 C -0.044 4.044
23 N -0.933 5.933
24 Si 0.967 3.033
25 H -0.283 1.283
26 H -0.292 1.292
27 H -0.273 1.273
28 C 0.073 3.927
29 C -0.168 4.168
30 C -0.034 4.034
31 H 0.076 0.924
32 H 0.053 0.947
33 H 0.057 0.943
34 H 0.067 0.933
35 H 0.114 0.886
36 H 0.111 0.889
37 H 0.118 0.882
38 H 0.084 0.916
39 H 0.096 0.904
40 H 0.058 0.942
41 H 0.109 0.891
42 H 0.060 0.940
43 H 0.064 0.936
44 H 0.002 0.998
45 H 0.019 0.981
46 H 0.028 0.972
47 H 0.248 0.752
48 H 0.113 0.887
49 H 0.056 0.944
50 H 0.078 0.922
51 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.937 7.176 3.160 21.424
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.109 4.109
3 H 0.097 0.903
4 C -0.146 4.146
5 C -0.074 4.074
6 C -0.091 4.091
7 O 0.045 5.955
8 N -0.054 5.054
9 C -0.198 4.198
10 C 0.381 3.619
11 O -0.426 6.426
12 N -0.322 5.322
13 C -0.012 4.012
14 C -0.156 4.156
15 C -0.165 4.165
16 C 0.064 3.936
17 H 0.059 0.941
18 N -0.327 5.327
19 C 0.037 3.963
20 C -0.396 4.396
21 H 0.081 0.919
22 C -0.240 4.240
23 N -0.580 5.580
24 Si 0.795 3.205
25 H -0.210 1.210
26 H -0.218 1.218
27 H -0.198 1.198
28 C -0.052 4.052
29 C -0.174 4.174
30 C -0.072 4.072
31 H 0.095 0.905
32 H 0.072 0.928
33 H 0.076 0.924
34 H 0.086 0.914
35 H 0.132 0.868
36 H 0.130 0.870
37 H 0.136 0.864
38 H 0.102 0.898
39 H 0.115 0.885
40 H 0.076 0.924
41 H 0.127 0.873
42 H 0.078 0.922
43 H 0.083 0.917
44 H 0.020 0.980
45 H 0.038 0.962
46 H 0.046 0.954
47 H 0.058 0.942
48 H 0.130 0.870
49 H 0.075 0.925
50 H 0.096 0.904
51 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges -19.093 7.045 2.549 20.510
hybrid contribution 0.594 -0.595 0.393 0.928
sum -18.499 6.450 2.942 19.811
Atomic orbital electron populations
1.21779 0.93031 1.02434 1.02696 1.21311 0.97131 0.99595 0.92891
0.90298 1.21766 0.92124 1.01689 0.99059 1.20633 0.94656 1.04863
0.87215 1.25071 0.82352 1.01192 1.00472 1.84743 1.28582 1.61974
1.20221 1.74561 1.22637 1.17532 0.90714 1.23244 0.91283 1.08086
0.97168 1.17125 0.84018 0.77385 0.83416 1.90690 1.25050 1.53613
1.73290 1.48262 1.09118 1.63071 1.11762 1.21892 1.03088 0.97184
0.79085 1.21849 0.95112 0.95486 1.03168 1.21973 0.96826 1.01830
0.95851 1.20672 0.85190 0.93251 0.94507 0.94062 1.44033 1.01768
1.41678 1.45260 1.20508 0.90255 0.93091 0.92447 1.19454 1.09431
0.99600 1.11154 0.91912 1.25817 0.99717 0.98794 0.99661 1.70219
1.19301 1.25683 1.42757 0.85277 0.78042 0.78623 0.78542 1.20999
1.21783 1.19777 1.23196 0.80701 0.99112 1.02149 1.20953 0.99526
1.06568 0.90341 1.20098 0.85605 1.01561 0.99904 0.90509 0.92779
0.92375 0.91429 0.86812 0.87043 0.86416 0.89798 0.88544 0.92368
0.87313 0.92167 0.91725 0.98000 0.96178 0.95355 0.94213 0.87042
0.92532 0.90379 0.90900
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.53 9.16 71.98 0.66 -0.87 16
2 C -0.09 -1.29 2.70 -10.57 -0.03 -1.31 16
3 H 0.08 1.09 8.12 -2.39 -0.02 1.07 16
4 C -0.11 -1.20 5.18 30.78 0.16 -1.04 16
5 C -0.04 -0.50 6.31 29.96 0.19 -0.31 16
6 C -0.03 -0.67 7.38 24.99 0.18 -0.49 16
7 O 0.11 3.90 11.18 78.66 0.88 4.78 16
8 N -0.35 -13.80 8.57 -48.95 -0.42 -14.22 16
9 C -0.04 -1.52 6.94 42.55 0.30 -1.23 16
10 C 0.59 22.17 7.72 86.93 0.67 22.84 16
11 O -0.55 -20.78 15.47 -3.71 -0.06 -20.84 16
12 N -0.59 -21.12 2.98 -821.04 -2.45 -23.57 16
13 C 0.11 3.08 6.41 86.36 0.55 3.63 16
14 C -0.12 -3.15 6.08 30.67 0.19 -2.97 16
15 C -0.13 -4.28 5.13 30.62 0.16 -4.13 16
16 C 0.17 7.39 2.74 45.07 0.12 7.51 16
17 H 0.04 1.91 7.88 -2.38 -0.02 1.89 16
18 N -0.60 -31.16 2.82 -702.35 -1.98 -33.14 16
19 C 0.18 9.20 7.89 127.77 1.01 10.21 16
20 C -0.27 -15.08 9.59 84.03 0.81 -14.28 16
21 H 0.06 3.51 7.81 -2.91 -0.02 3.49 16
22 C -0.04 -2.53 5.23 84.86 0.44 -2.09 16
23 N -0.93 -55.88 10.45 21.65 0.23 -55.66 16
24 Si 0.97 45.97 29.56 68.60 2.03 48.00 16
25 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16
26 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16
27 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16
28 C 0.07 3.01 5.70 86.31 0.49 3.50 16
29 C -0.17 -4.87 6.04 -20.06 -0.12 -5.00 16
30 C -0.03 -0.77 5.01 29.83 0.15 -0.62 16
31 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16
32 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16
33 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16
34 H 0.07 0.84 8.12 -2.39 -0.02 0.82 16
35 H 0.11 0.60 8.11 -2.39 -0.02 0.58 16
36 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16
37 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16
38 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16
39 H 0.10 2.63 7.03 -2.39 -0.02 2.62 16
40 H 0.06 1.64 8.14 -2.38 -0.02 1.63 16
41 H 0.11 2.19 8.14 -2.38 -0.02 2.17 16
42 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16
43 H 0.06 2.15 6.72 -2.39 -0.02 2.13 16
44 H 0.00 0.09 7.34 -2.39 -0.02 0.08 16
45 H 0.02 1.08 7.26 -2.38 -0.02 1.06 16
46 H 0.03 1.22 6.46 -2.39 -0.02 1.20 16
47 H 0.25 14.45 8.31 -92.70 -0.77 13.68 16
48 H 0.11 5.14 3.79 -41.32 -0.16 4.98 16
49 H 0.06 2.38 7.51 -2.39 -0.02 2.36 16
50 H 0.08 1.77 8.12 -2.38 -0.02 1.75 16
51 H 0.07 1.85 7.75 -2.39 -0.02 1.83 16
Total: -1.00 -71.89 391.20 4.94 -66.95
By element:
Atomic # 1 Polarization: 13.54 SS G_CDS: 0.78 Total: 14.32 kcal
Atomic # 6 Polarization: 7.43 SS G_CDS: 5.93 Total: 13.36 kcal
Atomic # 7 Polarization: -121.95 SS G_CDS: -4.62 Total: -126.57 kcal
Atomic # 8 Polarization: -16.88 SS G_CDS: 0.82 Total: -16.06 kcal
Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal
Total: -71.89 4.94 -66.95 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001027638367.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 100.908 kcal
(2) G-P(sol) polarization free energy of solvation -71.889 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.019 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.937 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.952 kcal
(6) G-S(sol) free energy of system = (1) + (5) 33.955 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.02 seconds