Wall clock time and date at job start Wed Apr 1 2020 05:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46269 * 2 1 4 4 C 1.53107 * 109.46141 * 119.98619 * 2 1 3 5 5 C 1.53433 * 109.72387 * 189.86323 * 4 2 1 6 6 C 1.50600 * 108.31309 * 309.98862 * 5 4 2 7 7 O 1.33193 * 129.60191 * 196.79140 * 6 5 4 8 8 N 1.21428 * 111.56798 * 179.81479 * 7 6 5 9 9 C 1.31499 * 111.52645 * 0.03300 * 8 7 6 10 10 C 1.48333 * 127.15179 * 179.97438 * 9 8 7 11 11 O 1.21497 * 119.99770 * 186.22350 * 10 9 8 12 12 N 1.34769 * 120.00162 * 6.22051 * 10 9 8 13 13 C 1.46925 * 120.63223 * 175.13686 * 12 10 9 14 14 C 1.53195 * 108.89240 * 233.67570 * 13 12 10 15 15 C 1.53037 * 109.31366 * 305.29023 * 14 13 12 16 16 C 1.53040 * 109.53956 * 61.36573 * 15 14 13 17 17 H 1.09004 * 109.49404 * 58.58326 * 16 15 14 18 18 N 1.46490 * 109.50231 * 178.65109 * 16 15 14 19 19 C 1.46500 * 119.99809 * 59.99818 * 18 16 15 20 20 C 1.36939 * 120.00517 * 240.00448 * 18 16 15 21 21 H 1.08001 * 119.99622 * 24.85037 * 20 18 16 22 22 C 1.38807 * 119.99968 * 204.85861 * 20 18 16 23 23 N 1.31613 * 120.00411 * 5.80073 * 22 20 18 24 24 Si 1.86807 * 119.99944 * 185.80215 * 22 20 18 25 25 H 1.48492 * 109.47161 * 89.99667 * 24 22 20 26 26 H 1.48498 * 109.47340 * 210.00044 * 24 22 20 27 27 H 1.48505 * 109.46971 * 329.99702 * 24 22 20 28 28 C 1.47206 * 120.81634 * 355.27248 * 12 10 9 29 29 C 1.35376 * 123.76509 * 16.94925 * 6 5 4 30 30 C 1.50063 * 124.93220 * 359.71244 * 29 6 5 31 31 H 1.09005 * 109.47079 * 300.01547 * 1 2 3 32 32 H 1.08999 * 109.46928 * 60.01078 * 1 2 3 33 33 H 1.08991 * 109.47058 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.43022 * 69.78455 * 4 2 1 35 35 H 1.08999 * 109.39015 * 309.91174 * 4 2 1 36 36 H 1.09003 * 109.68946 * 190.28848 * 5 4 2 37 37 H 1.08999 * 109.70000 * 69.69856 * 5 4 2 38 38 H 1.09001 * 109.59028 * 113.81564 * 13 12 10 39 39 H 1.08999 * 109.58407 * 353.52911 * 13 12 10 40 40 H 1.09007 * 109.50010 * 65.24621 * 14 13 12 41 41 H 1.09007 * 109.49928 * 185.33429 * 14 13 12 42 42 H 1.08998 * 109.45837 * 181.38463 * 15 14 13 43 43 H 1.08996 * 109.45837 * 301.34514 * 15 14 13 44 44 H 1.09002 * 109.47046 * 95.04507 * 19 18 16 45 45 H 1.09009 * 109.47428 * 215.04099 * 19 18 16 46 46 H 1.08996 * 109.47285 * 335.04248 * 19 18 16 47 47 H 0.97005 * 120.00048 * 180.02562 * 23 22 20 48 48 H 1.08996 * 109.53265 * 6.54043 * 28 12 10 49 49 H 1.09002 * 109.68220 * 246.23115 * 28 12 10 50 50 H 1.09008 * 109.92006 * 256.79730 * 30 29 6 51 51 H 1.09003 * 109.59446 * 136.15475 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0402 -0.7215 1.2504 5 6 3.5543 -0.5143 1.3863 6 6 4.1981 -0.8494 0.0667 7 8 5.4742 -1.1081 -0.2140 8 7 5.6327 -1.3431 -1.3948 9 6 4.4988 -1.2739 -2.0570 10 6 4.2944 -1.4967 -3.5092 11 8 3.2064 -1.2890 -4.0084 12 7 5.3156 -1.9296 -4.2748 13 6 5.1030 -2.2564 -5.6914 14 6 5.6121 -3.6771 -5.9544 15 6 7.0693 -3.7850 -5.4995 16 6 7.1578 -3.5108 -3.9964 17 1 6.5347 -4.2257 -3.4589 18 7 8.5483 -3.6459 -3.5558 19 6 9.5863 -2.7884 -4.1333 20 6 8.8781 -4.5737 -2.6041 21 1 8.2592 -5.4479 -2.4650 22 6 10.0075 -4.3907 -1.8183 23 7 10.6973 -3.2733 -1.9074 24 14 10.5487 -5.7304 -0.6342 25 1 11.4834 -6.6541 -1.3255 26 1 11.2327 -5.1144 0.5311 27 1 9.3598 -6.4876 -0.1667 28 6 6.6662 -2.0882 -3.7112 29 6 3.5189 -0.9374 -1.1010 30 6 2.0416 -0.7234 -1.2540 31 1 -0.3633 0.5141 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 -0.3633 -1.0276 0.0005 34 1 1.8261 -1.7870 1.1669 35 1 1.5387 -0.3188 2.1304 36 1 3.9465 -1.1703 2.1635 37 1 3.7615 0.5247 1.6427 38 1 5.6509 -1.5505 -6.3155 39 1 4.0395 -2.2005 -5.9236 40 1 5.0036 -4.3905 -5.3985 41 1 5.5466 -3.8956 -7.0204 42 1 7.4415 -4.7880 -5.7082 43 1 7.6728 -3.0545 -6.0380 44 1 9.7406 -1.9216 -3.4906 45 1 10.5171 -3.3497 -4.2159 46 1 9.2736 -2.4557 -5.1230 47 1 11.4868 -3.1456 -1.3585 48 1 6.6336 -1.9219 -2.6344 49 1 7.3430 -1.3685 -4.1717 50 1 1.5358 -1.6836 -1.3565 51 1 1.8502 -0.1113 -2.1354 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027638367.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:48 Heat of formation + Delta-G solvation = 33.955294 kcal Electronic energy + Delta-G solvation = -32325.188446 eV Core-core repulsion = 28227.814078 eV Total energy + Delta-G solvation = -4097.374368 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -46.21614 -41.29538 -39.28287 -38.86742 -36.70215 -35.27425 -33.92725 -33.40736 -33.01842 -31.30076 -30.39246 -28.26425 -28.06432 -27.10600 -25.37345 -24.97155 -24.48757 -23.08788 -22.74794 -21.41012 -20.63123 -19.98860 -18.96199 -18.81952 -18.23498 -17.96584 -17.17052 -16.89792 -16.29343 -16.08479 -15.72430 -15.44411 -15.30468 -15.17121 -14.94941 -14.78445 -14.49358 -14.34594 -14.31062 -14.05168 -13.78210 -13.68283 -13.51945 -13.12700 -12.96386 -12.80237 -12.62965 -12.54132 -12.36490 -12.24870 -12.18444 -12.07665 -11.89831 -11.70380 -11.64369 -11.63375 -11.57786 -11.36434 -11.24243 -11.09588 -10.64503 -10.13997 -9.86434 -8.75400 -7.82953 -5.34556 -0.01169 0.60767 1.44013 1.44876 1.53848 1.61819 1.93654 1.97189 2.47756 2.76107 3.28992 3.33500 3.54552 3.62955 3.80370 3.89571 3.93551 3.94196 4.00502 4.08009 4.17499 4.19552 4.24097 4.29604 4.44711 4.52782 4.53931 4.67917 4.72889 4.75032 4.79221 4.87613 4.91054 4.94017 4.95943 4.98760 5.02631 5.05424 5.13704 5.18162 5.27273 5.31170 5.34267 5.41568 5.42174 5.52726 5.53139 5.61345 5.72584 6.06876 6.32839 6.72861 7.07491 7.14827 7.83994 8.28706 9.19144 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010713 B = 0.003751 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.078146 B = 7462.391565 C = 9456.136404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.091 4.091 3 H 0.079 0.921 4 C -0.109 4.109 5 C -0.036 4.036 6 C -0.026 4.026 7 O 0.114 5.886 8 N -0.349 5.349 9 C -0.042 4.042 10 C 0.594 3.406 11 O -0.548 6.548 12 N -0.590 5.590 13 C 0.108 3.892 14 C -0.118 4.118 15 C -0.125 4.125 16 C 0.172 3.828 17 H 0.041 0.959 18 N -0.605 5.605 19 C 0.182 3.818 20 C -0.266 4.266 21 H 0.063 0.937 22 C -0.044 4.044 23 N -0.933 5.933 24 Si 0.967 3.033 25 H -0.283 1.283 26 H -0.292 1.292 27 H -0.273 1.273 28 C 0.073 3.927 29 C -0.168 4.168 30 C -0.034 4.034 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.118 0.882 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.058 0.942 41 H 0.109 0.891 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.002 0.998 45 H 0.019 0.981 46 H 0.028 0.972 47 H 0.248 0.752 48 H 0.113 0.887 49 H 0.056 0.944 50 H 0.078 0.922 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.937 7.176 3.160 21.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 H 0.097 0.903 4 C -0.146 4.146 5 C -0.074 4.074 6 C -0.091 4.091 7 O 0.045 5.955 8 N -0.054 5.054 9 C -0.198 4.198 10 C 0.381 3.619 11 O -0.426 6.426 12 N -0.322 5.322 13 C -0.012 4.012 14 C -0.156 4.156 15 C -0.165 4.165 16 C 0.064 3.936 17 H 0.059 0.941 18 N -0.327 5.327 19 C 0.037 3.963 20 C -0.396 4.396 21 H 0.081 0.919 22 C -0.240 4.240 23 N -0.580 5.580 24 Si 0.795 3.205 25 H -0.210 1.210 26 H -0.218 1.218 27 H -0.198 1.198 28 C -0.052 4.052 29 C -0.174 4.174 30 C -0.072 4.072 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.136 0.864 38 H 0.102 0.898 39 H 0.115 0.885 40 H 0.076 0.924 41 H 0.127 0.873 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.020 0.980 45 H 0.038 0.962 46 H 0.046 0.954 47 H 0.058 0.942 48 H 0.130 0.870 49 H 0.075 0.925 50 H 0.096 0.904 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.093 7.045 2.549 20.510 hybrid contribution 0.594 -0.595 0.393 0.928 sum -18.499 6.450 2.942 19.811 Atomic orbital electron populations 1.21779 0.93031 1.02434 1.02696 1.21311 0.97131 0.99595 0.92891 0.90298 1.21766 0.92124 1.01689 0.99059 1.20633 0.94656 1.04863 0.87215 1.25071 0.82352 1.01192 1.00472 1.84743 1.28582 1.61974 1.20221 1.74561 1.22637 1.17532 0.90714 1.23244 0.91283 1.08086 0.97168 1.17125 0.84018 0.77385 0.83416 1.90690 1.25050 1.53613 1.73290 1.48262 1.09118 1.63071 1.11762 1.21892 1.03088 0.97184 0.79085 1.21849 0.95112 0.95486 1.03168 1.21973 0.96826 1.01830 0.95851 1.20672 0.85190 0.93251 0.94507 0.94062 1.44033 1.01768 1.41678 1.45260 1.20508 0.90255 0.93091 0.92447 1.19454 1.09431 0.99600 1.11154 0.91912 1.25817 0.99717 0.98794 0.99661 1.70219 1.19301 1.25683 1.42757 0.85277 0.78042 0.78623 0.78542 1.20999 1.21783 1.19777 1.23196 0.80701 0.99112 1.02149 1.20953 0.99526 1.06568 0.90341 1.20098 0.85605 1.01561 0.99904 0.90509 0.92779 0.92375 0.91429 0.86812 0.87043 0.86416 0.89798 0.88544 0.92368 0.87313 0.92167 0.91725 0.98000 0.96178 0.95355 0.94213 0.87042 0.92532 0.90379 0.90900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.16 71.98 0.66 -0.87 16 2 C -0.09 -1.29 2.70 -10.57 -0.03 -1.31 16 3 H 0.08 1.09 8.12 -2.39 -0.02 1.07 16 4 C -0.11 -1.20 5.18 30.78 0.16 -1.04 16 5 C -0.04 -0.50 6.31 29.96 0.19 -0.31 16 6 C -0.03 -0.67 7.38 24.99 0.18 -0.49 16 7 O 0.11 3.90 11.18 78.66 0.88 4.78 16 8 N -0.35 -13.80 8.57 -48.95 -0.42 -14.22 16 9 C -0.04 -1.52 6.94 42.55 0.30 -1.23 16 10 C 0.59 22.17 7.72 86.93 0.67 22.84 16 11 O -0.55 -20.78 15.47 -3.71 -0.06 -20.84 16 12 N -0.59 -21.12 2.98 -821.04 -2.45 -23.57 16 13 C 0.11 3.08 6.41 86.36 0.55 3.63 16 14 C -0.12 -3.15 6.08 30.67 0.19 -2.97 16 15 C -0.13 -4.28 5.13 30.62 0.16 -4.13 16 16 C 0.17 7.39 2.74 45.07 0.12 7.51 16 17 H 0.04 1.91 7.88 -2.38 -0.02 1.89 16 18 N -0.60 -31.16 2.82 -702.35 -1.98 -33.14 16 19 C 0.18 9.20 7.89 127.77 1.01 10.21 16 20 C -0.27 -15.08 9.59 84.03 0.81 -14.28 16 21 H 0.06 3.51 7.81 -2.91 -0.02 3.49 16 22 C -0.04 -2.53 5.23 84.86 0.44 -2.09 16 23 N -0.93 -55.88 10.45 21.65 0.23 -55.66 16 24 Si 0.97 45.97 29.56 68.60 2.03 48.00 16 25 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 26 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 27 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 28 C 0.07 3.01 5.70 86.31 0.49 3.50 16 29 C -0.17 -4.87 6.04 -20.06 -0.12 -5.00 16 30 C -0.03 -0.77 5.01 29.83 0.15 -0.62 16 31 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.07 0.84 8.12 -2.39 -0.02 0.82 16 35 H 0.11 0.60 8.11 -2.39 -0.02 0.58 16 36 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.10 2.63 7.03 -2.39 -0.02 2.62 16 40 H 0.06 1.64 8.14 -2.38 -0.02 1.63 16 41 H 0.11 2.19 8.14 -2.38 -0.02 2.17 16 42 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.06 2.15 6.72 -2.39 -0.02 2.13 16 44 H 0.00 0.09 7.34 -2.39 -0.02 0.08 16 45 H 0.02 1.08 7.26 -2.38 -0.02 1.06 16 46 H 0.03 1.22 6.46 -2.39 -0.02 1.20 16 47 H 0.25 14.45 8.31 -92.70 -0.77 13.68 16 48 H 0.11 5.14 3.79 -41.32 -0.16 4.98 16 49 H 0.06 2.38 7.51 -2.39 -0.02 2.36 16 50 H 0.08 1.77 8.12 -2.38 -0.02 1.75 16 51 H 0.07 1.85 7.75 -2.39 -0.02 1.83 16 Total: -1.00 -71.89 391.20 4.94 -66.95 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 0.78 Total: 14.32 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: 5.93 Total: 13.36 kcal Atomic # 7 Polarization: -121.95 SS G_CDS: -4.62 Total: -126.57 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: 0.82 Total: -16.06 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -71.89 4.94 -66.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027638367.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.908 kcal (2) G-P(sol) polarization free energy of solvation -71.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds