Wall clock time and date at job start Wed Apr 1 2020 04:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47325 * 2 1 4 4 O 1.42904 * 109.46360 * 119.99743 * 2 1 3 5 5 C 1.35681 * 117.00204 * 90.00499 * 4 2 1 6 6 C 1.38889 * 119.62851 * 179.97438 * 5 4 2 7 7 C 1.39570 * 118.95261 * 179.97438 * 6 5 4 8 8 C 1.48160 * 120.89174 * 179.97438 * 7 6 5 9 9 O 1.21513 * 119.99754 * 212.80417 * 8 7 6 10 10 N 1.34773 * 120.00031 * 32.81485 * 8 7 6 11 11 C 1.46927 * 120.63303 * 5.49521 * 10 8 7 12 12 C 1.53195 * 108.77383 * 126.37077 * 11 10 8 13 13 C 1.53039 * 109.30970 * 54.63873 * 12 11 10 14 14 C 1.53042 * 109.53934 * 298.63571 * 13 12 11 15 15 H 1.09000 * 109.49318 * 301.37351 * 14 13 12 16 16 N 1.46505 * 109.49601 * 181.31726 * 14 13 12 17 17 C 1.46501 * 120.00007 * 299.99704 * 16 14 13 18 18 C 1.36939 * 119.99901 * 119.99511 * 16 14 13 19 19 H 1.08005 * 119.99629 * 24.36197 * 18 16 14 20 20 C 1.38808 * 120.00060 * 204.35433 * 18 16 14 21 21 N 1.31615 * 120.00034 * 15.64454 * 20 18 16 22 22 Si 1.86799 * 119.99892 * 195.64775 * 20 18 16 23 23 H 1.48503 * 109.47379 * 60.00303 * 22 20 18 24 24 H 1.48501 * 109.46945 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47013 * 299.99700 * 22 20 18 26 26 C 1.46927 * 120.62787 * 185.22479 * 10 8 7 27 27 C 1.39967 * 118.21499 * 0.02562 * 7 6 5 28 28 C 1.37978 * 119.13231 * 0.02562 * 27 7 6 29 29 N 1.31907 * 120.98054 * 359.97438 * 28 27 7 30 30 H 1.08994 * 109.47180 * 300.00515 * 1 2 3 31 31 H 1.08999 * 109.46942 * 60.00386 * 1 2 3 32 32 H 1.09004 * 109.47081 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47180 * 239.99485 * 2 1 3 34 34 H 1.08994 * 109.46983 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.46796 * 299.99704 * 3 2 1 36 36 H 1.09000 * 109.46916 * 59.99177 * 3 2 1 37 37 H 1.08003 * 120.51889 * 359.97438 * 6 5 4 38 38 H 1.08996 * 109.58901 * 246.16174 * 11 10 8 39 39 H 1.09003 * 109.58377 * 6.59181 * 11 10 8 40 40 H 1.08998 * 109.49243 * 174.58911 * 12 11 10 41 41 H 1.09001 * 109.49710 * 294.69046 * 12 11 10 42 42 H 1.09008 * 109.45842 * 58.65533 * 13 12 11 43 43 H 1.08998 * 109.45863 * 178.61046 * 13 12 11 44 44 H 1.08998 * 109.47282 * 92.90862 * 17 16 14 45 45 H 1.09000 * 109.46829 * 212.90471 * 17 16 14 46 46 H 1.08996 * 109.47193 * 332.90634 * 17 16 14 47 47 H 0.97003 * 120.00550 * 179.97438 * 21 20 18 48 48 H 1.09002 * 109.59213 * 353.41396 * 26 10 8 49 49 H 1.09005 * 109.58800 * 113.83893 * 26 10 8 50 50 H 1.07996 * 120.43340 * 179.97438 * 27 7 6 51 51 H 1.08005 * 119.50843 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0062 -0.6736 1.1669 5 6 2.2116 -2.0110 1.0655 6 6 2.6744 -2.7200 2.1664 7 6 2.8802 -4.0953 2.0465 8 6 3.3734 -4.8934 3.1932 9 8 4.0889 -5.8564 3.0002 10 7 3.0283 -4.5515 4.4503 11 6 2.0692 -3.4655 4.6943 12 6 0.9452 -3.9927 5.5919 13 6 1.5517 -4.5929 6.8624 14 6 2.4628 -5.7649 6.4904 15 1 1.8869 -6.5160 5.9498 16 7 3.0181 -6.3585 7.7093 17 6 3.8377 -5.5462 8.6119 18 6 2.7710 -7.6726 8.0049 19 1 2.5286 -8.3675 7.2144 20 6 2.8322 -8.1115 9.3203 21 7 2.8193 -7.2397 10.3062 22 14 2.9329 -9.9395 9.6912 23 1 4.1563 -10.5046 9.0673 24 1 2.9867 -10.1441 11.1611 25 1 1.7352 -10.6231 9.1403 26 6 3.5996 -5.2615 5.6028 27 6 2.6093 -4.6999 0.8136 28 6 2.1529 -3.9217 -0.2303 29 7 1.9699 -2.6240 -0.0804 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4424 0.0005 35 1 1.6768 1.9562 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 2.8719 -2.2151 3.1005 38 1 2.5741 -2.6364 5.1898 39 1 1.6512 -3.1274 3.7460 40 1 0.2784 -3.1730 5.8591 41 1 0.3839 -4.7603 5.0591 42 1 2.1334 -3.8313 7.3819 43 1 0.7527 -4.9465 7.5141 44 1 3.2045 -5.1110 9.3850 45 1 4.5982 -6.1742 9.0761 46 1 4.3203 -4.7493 8.0463 47 1 2.8617 -7.5463 11.2255 48 1 4.1912 -6.1080 5.2540 49 1 4.2320 -4.5818 6.1740 50 1 2.7563 -5.7616 0.6810 51 1 1.9423 -4.3819 -1.1844 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027645234.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:52 Heat of formation + Delta-G solvation = 0.210647 kcal Electronic energy + Delta-G solvation = -31206.630467 eV Core-core repulsion = 27107.792821 eV Total energy + Delta-G solvation = -4098.837646 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.26201 -39.93880 -38.39738 -37.41140 -35.24150 -33.63990 -33.20171 -32.10750 -31.32590 -30.45370 -28.78521 -27.63345 -26.17474 -25.97087 -24.23880 -23.98791 -23.19956 -21.96415 -21.52801 -20.17831 -18.99085 -18.24899 -17.20869 -16.84225 -16.67826 -16.24937 -16.04238 -15.62019 -15.20909 -14.92104 -14.56481 -14.48492 -14.14819 -14.05252 -13.86535 -13.63262 -13.45906 -13.27938 -12.78556 -12.70731 -12.67682 -12.63274 -12.35637 -12.29241 -12.16186 -11.99705 -11.30621 -11.14446 -11.07320 -10.96376 -10.88093 -10.68428 -10.47026 -10.33486 -10.28122 -10.15656 -10.05872 -9.90705 -9.78751 -9.54328 -8.76522 -8.64035 -8.39395 -6.74790 -5.74037 -3.20384 0.53309 0.87586 2.59887 2.75934 3.01998 3.40314 3.45366 3.47783 3.54615 3.93374 4.28506 4.49666 4.49859 4.60751 4.63833 4.70989 4.84505 4.87800 4.94818 5.13975 5.17605 5.25392 5.32027 5.34854 5.38358 5.43091 5.46524 5.48651 5.52649 5.57339 5.72234 5.74134 5.81755 5.82205 5.88368 5.96491 6.06861 6.14150 6.18954 6.36256 6.49332 6.59551 6.74304 6.92094 6.95868 6.98975 7.32070 7.46836 7.50290 7.67988 7.81458 8.14188 8.40184 9.22084 9.84934 10.34313 11.31100 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021001 B = 0.002327 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.926132 B =12028.049683 C =12726.040840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.081 3.919 3 C -0.151 4.151 4 O -0.300 6.300 5 C 0.320 3.680 6 C -0.169 4.169 7 C -0.040 4.040 8 C 0.554 3.446 9 O -0.527 6.527 10 N -0.592 5.592 11 C 0.088 3.912 12 C -0.132 4.132 13 C -0.132 4.132 14 C 0.169 3.831 15 H 0.065 0.935 16 N -0.590 5.590 17 C 0.159 3.841 18 C -0.258 4.258 19 H 0.067 0.933 20 C 0.005 3.995 21 N -0.904 5.904 22 Si 0.904 3.096 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.096 3.904 27 C -0.160 4.160 28 C 0.138 3.862 29 N -0.530 5.530 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.089 0.911 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.155 0.845 38 H 0.072 0.928 39 H 0.093 0.907 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.068 0.932 44 H 0.030 0.970 45 H 0.041 0.959 46 H 0.000 1.000 47 H 0.253 0.747 48 H 0.092 0.908 49 H 0.067 0.933 50 H 0.148 0.852 51 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.072 16.523 -20.967 27.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.025 3.975 3 C -0.209 4.209 4 O -0.208 6.208 5 C 0.142 3.858 6 C -0.190 4.190 7 C -0.051 4.051 8 C 0.341 3.659 9 O -0.404 6.404 10 N -0.325 5.325 11 C -0.034 4.034 12 C -0.171 4.171 13 C -0.172 4.172 14 C 0.060 3.940 15 H 0.083 0.917 16 N -0.312 5.312 17 C 0.015 3.985 18 C -0.387 4.387 19 H 0.085 0.915 20 C -0.194 4.194 21 N -0.548 5.548 22 Si 0.734 3.266 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.209 1.209 26 C -0.027 4.027 27 C -0.181 4.181 28 C -0.017 4.017 29 N -0.254 5.254 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.173 0.827 38 H 0.090 0.910 39 H 0.111 0.889 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.087 0.913 44 H 0.048 0.952 45 H 0.060 0.940 46 H 0.019 0.981 47 H 0.063 0.937 48 H 0.110 0.890 49 H 0.086 0.914 50 H 0.166 0.834 51 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -3.919 16.650 -21.280 27.302 hybrid contribution 0.170 -1.375 0.938 1.674 sum -3.749 15.274 -20.342 25.713 Atomic orbital electron populations 1.22222 0.94797 1.02956 1.02656 1.22360 0.94441 0.92778 0.87885 1.21914 1.02046 0.93847 1.03049 1.86311 1.80115 1.15610 1.38730 1.19610 0.92084 0.84818 0.89333 1.21515 1.04638 0.93303 0.99523 1.20235 0.96862 0.92963 0.95077 1.18127 0.81242 0.84022 0.82517 1.90803 1.37853 1.27201 1.84571 1.48093 1.43462 1.35324 1.05597 1.22386 0.90589 0.89448 1.00984 1.21948 0.97055 1.00772 0.97346 1.22133 1.00228 0.98920 0.95925 1.20499 0.91476 0.93581 0.88486 0.91654 1.43863 1.56682 1.09164 1.21486 1.20777 0.93722 0.92368 0.91659 1.19153 1.43912 0.84117 0.91532 0.91519 1.25009 1.00987 0.97641 0.95763 1.70059 1.53984 1.32371 0.98412 0.86351 0.78216 0.85239 0.76839 1.20993 1.21668 1.20916 1.22421 0.98057 0.97073 0.85153 1.22103 1.01261 1.02551 0.92188 1.22390 0.93211 0.87367 0.98773 1.67124 1.20901 1.12929 1.24482 0.91871 0.91124 0.91940 0.89249 0.91790 0.90485 0.91524 0.82714 0.90959 0.88896 0.91115 0.91767 0.92406 0.91332 0.95208 0.93988 0.98137 0.93693 0.88956 0.91438 0.83434 0.81669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.18 9.53 37.16 0.35 -0.83 16 2 C 0.08 0.65 3.11 -26.73 -0.08 0.57 16 3 C -0.15 -0.91 9.56 37.16 0.36 -0.55 16 4 O -0.30 -3.09 9.76 -18.75 -0.18 -3.28 16 5 C 0.32 3.53 7.45 -17.16 -0.13 3.40 16 6 C -0.17 -1.89 7.42 -38.84 -0.29 -2.17 16 7 C -0.04 -0.51 5.39 -104.68 -0.56 -1.07 16 8 C 0.55 8.75 7.46 -12.19 -0.09 8.66 16 9 O -0.53 -10.18 16.27 5.35 0.09 -10.09 16 10 N -0.59 -9.02 2.98 -174.02 -0.52 -9.54 16 11 C 0.09 1.07 4.79 -3.71 -0.02 1.05 16 12 C -0.13 -1.75 6.08 -26.61 -0.16 -1.91 16 13 C -0.13 -2.29 5.15 -26.69 -0.14 -2.43 16 14 C 0.17 3.41 2.73 -68.03 -0.19 3.23 16 15 H 0.07 1.41 7.87 -51.93 -0.41 1.00 16 16 N -0.59 -14.55 2.81 -173.60 -0.49 -15.04 16 17 C 0.16 3.82 8.07 59.85 0.48 4.30 16 18 C -0.26 -7.08 9.55 -15.06 -0.14 -7.23 16 19 H 0.07 1.82 7.85 -52.48 -0.41 1.41 16 20 C 0.00 0.13 5.02 -17.43 -0.09 0.05 16 21 N -0.90 -26.16 10.97 55.49 0.61 -25.55 16 22 Si 0.90 22.00 29.58 -169.99 -5.03 16.97 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 C 0.10 1.75 5.78 -3.93 -0.02 1.72 16 27 C -0.16 -1.74 9.71 -39.03 -0.38 -2.12 16 28 C 0.14 1.27 11.17 -17.61 -0.20 1.07 16 29 N -0.53 -5.55 8.61 -13.38 -0.12 -5.66 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 0.76 6.98 -51.93 -0.36 0.39 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.16 1.57 5.85 -52.48 -0.31 1.26 16 38 H 0.07 0.79 8.06 -51.93 -0.42 0.37 16 39 H 0.09 0.99 4.28 -51.93 -0.22 0.77 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.06 1.00 7.72 -51.92 -0.40 0.60 16 43 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.03 0.77 7.44 -51.93 -0.39 0.38 16 45 H 0.04 1.09 7.35 -51.93 -0.38 0.71 16 46 H 0.00 0.00 6.34 -51.93 -0.33 -0.33 16 47 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 48 H 0.09 1.90 7.00 -51.93 -0.36 1.53 16 49 H 0.07 1.20 6.47 -51.93 -0.34 0.87 16 50 H 0.15 1.52 8.03 -52.49 -0.42 1.10 16 51 H 0.17 0.96 8.06 -52.48 -0.42 0.54 16 LS Contribution 401.15 15.07 6.05 6.05 Total: -1.00 -31.97 401.15 -9.00 -40.97 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -8.11 Total: -0.55 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -1.29 Total: 5.72 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: -0.51 Total: -55.79 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -0.10 Total: -13.37 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.97 -9.00 -40.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027645234.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.178 kcal (2) G-P(sol) polarization free energy of solvation -31.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds