Wall clock time and date at job start Wed Apr 1 2020 04:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47325 * 2 1 4 4 O 1.42904 * 109.46360 * 119.99743 * 2 1 3 5 5 C 1.35681 * 117.00204 * 90.00499 * 4 2 1 6 6 C 1.38889 * 119.62851 * 179.97438 * 5 4 2 7 7 C 1.39570 * 118.95261 * 179.97438 * 6 5 4 8 8 C 1.48160 * 120.89174 * 179.97438 * 7 6 5 9 9 O 1.21513 * 119.99754 * 212.80417 * 8 7 6 10 10 N 1.34773 * 120.00031 * 32.81485 * 8 7 6 11 11 C 1.46927 * 120.63303 * 5.49521 * 10 8 7 12 12 C 1.53195 * 108.77383 * 126.37077 * 11 10 8 13 13 C 1.53039 * 109.30970 * 54.63873 * 12 11 10 14 14 C 1.53042 * 109.53934 * 298.63571 * 13 12 11 15 15 H 1.09000 * 109.49318 * 301.37351 * 14 13 12 16 16 N 1.46505 * 109.49601 * 181.31726 * 14 13 12 17 17 C 1.46501 * 120.00007 * 299.99704 * 16 14 13 18 18 C 1.36939 * 119.99901 * 119.99511 * 16 14 13 19 19 H 1.08005 * 119.99629 * 24.36197 * 18 16 14 20 20 C 1.38808 * 120.00060 * 204.35433 * 18 16 14 21 21 N 1.31615 * 120.00034 * 15.64454 * 20 18 16 22 22 Si 1.86799 * 119.99892 * 195.64775 * 20 18 16 23 23 H 1.48503 * 109.47379 * 60.00303 * 22 20 18 24 24 H 1.48501 * 109.46945 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47013 * 299.99700 * 22 20 18 26 26 C 1.46927 * 120.62787 * 185.22479 * 10 8 7 27 27 C 1.39967 * 118.21499 * 0.02562 * 7 6 5 28 28 C 1.37978 * 119.13231 * 0.02562 * 27 7 6 29 29 N 1.31907 * 120.98054 * 359.97438 * 28 27 7 30 30 H 1.08994 * 109.47180 * 300.00515 * 1 2 3 31 31 H 1.08999 * 109.46942 * 60.00386 * 1 2 3 32 32 H 1.09004 * 109.47081 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47180 * 239.99485 * 2 1 3 34 34 H 1.08994 * 109.46983 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.46796 * 299.99704 * 3 2 1 36 36 H 1.09000 * 109.46916 * 59.99177 * 3 2 1 37 37 H 1.08003 * 120.51889 * 359.97438 * 6 5 4 38 38 H 1.08996 * 109.58901 * 246.16174 * 11 10 8 39 39 H 1.09003 * 109.58377 * 6.59181 * 11 10 8 40 40 H 1.08998 * 109.49243 * 174.58911 * 12 11 10 41 41 H 1.09001 * 109.49710 * 294.69046 * 12 11 10 42 42 H 1.09008 * 109.45842 * 58.65533 * 13 12 11 43 43 H 1.08998 * 109.45863 * 178.61046 * 13 12 11 44 44 H 1.08998 * 109.47282 * 92.90862 * 17 16 14 45 45 H 1.09000 * 109.46829 * 212.90471 * 17 16 14 46 46 H 1.08996 * 109.47193 * 332.90634 * 17 16 14 47 47 H 0.97003 * 120.00550 * 179.97438 * 21 20 18 48 48 H 1.09002 * 109.59213 * 353.41396 * 26 10 8 49 49 H 1.09005 * 109.58800 * 113.83893 * 26 10 8 50 50 H 1.07996 * 120.43340 * 179.97438 * 27 7 6 51 51 H 1.08005 * 119.50843 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0062 -0.6736 1.1669 5 6 2.2116 -2.0110 1.0655 6 6 2.6744 -2.7200 2.1664 7 6 2.8802 -4.0953 2.0465 8 6 3.3734 -4.8934 3.1932 9 8 4.0889 -5.8564 3.0002 10 7 3.0283 -4.5515 4.4503 11 6 2.0692 -3.4655 4.6943 12 6 0.9452 -3.9927 5.5919 13 6 1.5517 -4.5929 6.8624 14 6 2.4628 -5.7649 6.4904 15 1 1.8869 -6.5160 5.9498 16 7 3.0181 -6.3585 7.7093 17 6 3.8377 -5.5462 8.6119 18 6 2.7710 -7.6726 8.0049 19 1 2.5286 -8.3675 7.2144 20 6 2.8322 -8.1115 9.3203 21 7 2.8193 -7.2397 10.3062 22 14 2.9329 -9.9395 9.6912 23 1 4.1563 -10.5046 9.0673 24 1 2.9867 -10.1441 11.1611 25 1 1.7352 -10.6231 9.1403 26 6 3.5996 -5.2615 5.6028 27 6 2.6093 -4.6999 0.8136 28 6 2.1529 -3.9217 -0.2303 29 7 1.9699 -2.6240 -0.0804 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4424 0.0005 35 1 1.6768 1.9562 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 2.8719 -2.2151 3.1005 38 1 2.5741 -2.6364 5.1898 39 1 1.6512 -3.1274 3.7460 40 1 0.2784 -3.1730 5.8591 41 1 0.3839 -4.7603 5.0591 42 1 2.1334 -3.8313 7.3819 43 1 0.7527 -4.9465 7.5141 44 1 3.2045 -5.1110 9.3850 45 1 4.5982 -6.1742 9.0761 46 1 4.3203 -4.7493 8.0463 47 1 2.8617 -7.5463 11.2255 48 1 4.1912 -6.1080 5.2540 49 1 4.2320 -4.5818 6.1740 50 1 2.7563 -5.7616 0.6810 51 1 1.9423 -4.3819 -1.1844 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027645234.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:51 Heat of formation + Delta-G solvation = -19.658706 kcal Electronic energy + Delta-G solvation = -31207.492067 eV Core-core repulsion = 27107.792821 eV Total energy + Delta-G solvation = -4099.699245 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.19418 -41.03283 -39.33299 -38.74636 -36.90328 -34.51526 -34.20730 -33.40923 -32.95186 -31.30235 -30.37180 -28.11697 -28.05495 -27.29642 -25.58085 -25.07731 -24.34240 -23.12534 -22.60632 -21.28378 -20.36554 -19.26440 -18.75999 -18.20208 -17.69490 -17.19028 -17.08360 -16.84979 -16.54597 -16.22035 -15.70630 -15.55155 -15.46473 -15.20026 -14.95861 -14.82998 -14.67415 -14.47965 -14.20106 -13.97881 -13.77009 -13.67384 -13.24147 -13.14222 -13.08538 -12.92842 -12.82914 -12.77133 -12.51443 -12.33810 -12.16960 -11.99261 -11.88842 -11.82988 -11.78934 -11.74476 -11.43050 -11.39962 -10.93054 -10.67902 -10.55209 -9.82332 -9.54549 -8.76499 -7.86319 -5.34859 -0.38063 0.07139 1.43543 1.46439 1.52709 1.56378 1.72924 2.01234 2.49157 2.68208 3.14734 3.26235 3.32347 3.56738 3.82225 3.87153 3.94799 3.98323 4.02834 4.03639 4.07447 4.08240 4.17733 4.32271 4.32842 4.53499 4.54633 4.62066 4.68476 4.73674 4.74979 4.80575 4.87028 4.88207 4.90500 4.93697 4.94385 5.02876 5.11462 5.23753 5.24161 5.31416 5.34675 5.37071 5.44832 5.46125 5.62786 5.68290 6.22787 6.24750 6.31332 6.71660 6.90488 7.12461 7.83390 8.26969 9.16214 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021001 B = 0.002327 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.926132 B =12028.049683 C =12726.040840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.075 3.925 3 C -0.148 4.148 4 O -0.308 6.308 5 C 0.317 3.683 6 C -0.168 4.168 7 C -0.053 4.053 8 C 0.553 3.447 9 O -0.572 6.572 10 N -0.592 5.592 11 C 0.088 3.912 12 C -0.123 4.123 13 C -0.122 4.122 14 C 0.168 3.832 15 H 0.043 0.957 16 N -0.607 5.607 17 C 0.176 3.824 18 C -0.269 4.269 19 H 0.060 0.940 20 C -0.045 4.045 21 N -0.930 5.930 22 Si 0.964 3.036 23 H -0.282 1.282 24 H -0.290 1.290 25 H -0.276 1.276 26 C 0.112 3.888 27 C -0.166 4.166 28 C 0.150 3.850 29 N -0.532 5.532 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.048 0.952 33 H 0.084 0.916 34 H 0.059 0.941 35 H 0.097 0.903 36 H 0.067 0.933 37 H 0.166 0.834 38 H 0.095 0.905 39 H 0.115 0.885 40 H 0.104 0.896 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.042 0.958 44 H 0.008 0.992 45 H 0.013 0.987 46 H 0.035 0.965 47 H 0.250 0.750 48 H 0.062 0.938 49 H 0.075 0.925 50 H 0.149 0.851 51 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.043 18.585 -23.161 30.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.019 3.981 3 C -0.205 4.205 4 O -0.216 6.216 5 C 0.138 3.862 6 C -0.189 4.189 7 C -0.064 4.064 8 C 0.342 3.658 9 O -0.452 6.452 10 N -0.323 5.323 11 C -0.033 4.033 12 C -0.162 4.162 13 C -0.161 4.161 14 C 0.060 3.940 15 H 0.062 0.938 16 N -0.330 5.330 17 C 0.031 3.969 18 C -0.399 4.399 19 H 0.078 0.922 20 C -0.241 4.241 21 N -0.576 5.576 22 Si 0.792 3.208 23 H -0.208 1.208 24 H -0.216 1.216 25 H -0.202 1.202 26 C -0.012 4.012 27 C -0.187 4.187 28 C -0.006 4.006 29 N -0.256 5.256 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.067 0.933 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.115 0.885 36 H 0.086 0.914 37 H 0.183 0.817 38 H 0.114 0.886 39 H 0.133 0.867 40 H 0.122 0.878 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.061 0.939 44 H 0.027 0.973 45 H 0.032 0.968 46 H 0.053 0.947 47 H 0.059 0.941 48 H 0.081 0.919 49 H 0.093 0.907 50 H 0.167 0.833 51 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -4.920 18.760 -23.507 30.475 hybrid contribution 0.445 -1.965 1.492 2.507 sum -4.476 16.795 -22.015 28.049 Atomic orbital electron populations 1.22195 0.94030 1.02333 1.03635 1.22597 0.95094 0.93481 0.86918 1.21929 1.01792 0.92675 1.04105 1.86306 1.80097 1.15218 1.39942 1.19695 0.91884 0.85260 0.89345 1.21505 1.04610 0.92572 1.00248 1.19969 0.98633 0.93395 0.94379 1.18625 0.80376 0.83592 0.83216 1.90775 1.39856 1.29326 1.85252 1.48117 1.43821 1.35632 1.04726 1.22654 0.89700 0.88770 1.02128 1.21903 0.97642 1.01515 0.95093 1.21939 0.98849 0.97667 0.97690 1.20605 0.92392 0.94113 0.86910 0.93841 1.44055 1.57450 1.08782 1.22702 1.20520 0.92566 0.92363 0.91460 1.19385 1.43335 0.85644 0.91552 0.92230 1.25710 1.01324 1.01468 0.95640 1.70195 1.55167 1.33858 0.98369 0.85393 0.78216 0.80730 0.76416 1.20820 1.21602 1.20209 1.21940 0.96866 0.96576 0.85829 1.22252 1.01393 1.02948 0.92077 1.22916 0.91398 0.86754 0.99494 1.67234 1.20735 1.13372 1.24301 0.91784 0.89288 0.93294 0.89757 0.92204 0.88480 0.91418 0.81663 0.88647 0.86693 0.87801 0.92300 0.91933 0.93888 0.97344 0.96822 0.94712 0.94095 0.91909 0.90698 0.83339 0.78117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 9.53 71.98 0.69 -1.21 16 2 C 0.07 1.01 3.11 30.60 0.10 1.11 16 3 C -0.15 -1.40 9.56 71.98 0.69 -0.71 16 4 O -0.31 -5.62 9.76 -89.99 -0.88 -6.50 16 5 C 0.32 6.23 7.45 84.80 0.63 6.86 16 6 C -0.17 -3.39 7.42 22.75 0.17 -3.22 16 7 C -0.05 -1.27 5.39 -19.90 -0.11 -1.37 16 8 C 0.55 17.34 7.46 86.88 0.65 17.99 16 9 O -0.57 -22.68 16.27 -3.76 -0.06 -22.74 16 10 N -0.59 -17.55 2.98 -822.78 -2.45 -20.01 16 11 C 0.09 1.91 4.79 86.36 0.41 2.32 16 12 C -0.12 -2.97 6.08 30.67 0.19 -2.79 16 13 C -0.12 -4.16 5.15 30.62 0.16 -4.00 16 14 C 0.17 6.91 2.73 44.92 0.12 7.03 16 15 H 0.04 1.95 7.87 -2.39 -0.02 1.93 16 16 N -0.61 -30.79 2.81 -703.15 -1.97 -32.76 16 17 C 0.18 8.59 8.07 127.77 1.03 9.62 16 18 C -0.27 -15.24 9.55 84.03 0.80 -14.44 16 19 H 0.06 3.38 7.85 -2.91 -0.02 3.36 16 20 C -0.05 -2.59 5.02 84.86 0.43 -2.16 16 21 N -0.93 -55.21 10.97 21.65 0.24 -54.97 16 22 Si 0.96 46.15 29.58 68.60 2.03 48.18 16 23 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 24 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 25 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 26 C 0.11 4.11 5.78 86.22 0.50 4.61 16 27 C -0.17 -3.35 9.71 22.63 0.22 -3.13 16 28 C 0.15 2.35 11.17 84.62 0.94 3.30 16 29 N -0.53 -9.77 8.61 -309.14 -2.66 -12.44 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.08 1.23 6.98 -2.39 -0.02 1.21 16 34 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.17 2.88 5.85 -2.91 -0.02 2.87 16 38 H 0.10 1.71 8.06 -2.39 -0.02 1.69 16 39 H 0.12 2.09 4.28 -2.39 -0.01 2.08 16 40 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.06 2.08 7.72 -2.38 -0.02 2.06 16 43 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.01 0.44 7.44 -2.39 -0.02 0.42 16 45 H 0.01 0.71 7.35 -2.39 -0.02 0.69 16 46 H 0.03 1.42 6.34 -2.39 -0.02 1.41 16 47 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 48 H 0.06 2.68 7.00 -2.39 -0.02 2.67 16 49 H 0.07 2.62 6.47 -2.38 -0.02 2.61 16 50 H 0.15 2.94 8.03 -2.91 -0.02 2.91 16 51 H 0.20 1.61 8.06 -2.91 -0.02 1.59 16 Total: -1.00 -72.03 401.15 2.78 -69.25 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 0.92 Total: 12.18 kcal Atomic # 6 Polarization: 12.19 SS G_CDS: 7.61 Total: 19.80 kcal Atomic # 7 Polarization: -113.33 SS G_CDS: -6.85 Total: -120.18 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -0.94 Total: -29.24 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -72.03 2.78 -69.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027645234.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.594 kcal (2) G-P(sol) polarization free energy of solvation -72.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds