Wall clock time and date at job start Wed Apr 1 2020 04:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46935 * 2 1 4 4 O 1.42898 * 109.47343 * 120.00265 * 2 1 3 5 5 C 1.35684 * 117.00251 * 89.99995 * 4 2 1 6 6 C 1.38889 * 119.62478 * 179.72865 * 5 4 2 7 7 C 1.39573 * 118.95016 * 180.27873 * 6 5 4 8 8 C 1.48161 * 120.89391 * 180.02562 * 7 6 5 9 9 O 1.21514 * 119.99333 * 134.81241 * 8 7 6 10 10 N 1.34775 * 120.00448 * 314.81581 * 8 7 6 11 11 C 1.46924 * 120.62645 * 3.93566 * 10 8 7 12 12 C 1.52756 * 109.00595 * 233.58301 * 11 10 8 13 13 C 1.53042 * 109.38656 * 305.58986 * 12 11 10 14 14 C 1.53041 * 109.53788 * 61.23786 * 13 12 11 15 15 H 1.09005 * 109.52246 * 58.60531 * 14 13 12 16 16 N 1.46498 * 109.49988 * 178.68733 * 14 13 12 17 17 C 1.46498 * 119.99700 * 59.83677 * 16 14 13 18 18 C 1.36937 * 119.99876 * 239.83926 * 16 14 13 19 19 H 1.07999 * 120.00010 * 23.67107 * 18 16 14 20 20 C 1.38812 * 119.99879 * 203.66689 * 18 16 14 21 21 N 1.31617 * 120.00133 * 11.49030 * 20 18 16 22 22 Si 1.86807 * 119.99868 * 191.49465 * 20 18 16 23 23 H 1.48504 * 109.47059 * 89.99892 * 22 20 18 24 24 H 1.48497 * 109.46591 * 210.00023 * 22 20 18 25 25 H 1.48500 * 109.47042 * 329.99873 * 22 20 18 26 26 C 1.46920 * 120.63062 * 184.21188 * 10 8 7 27 27 C 1.39966 * 118.21548 * 0.02562 * 7 6 5 28 28 C 1.37979 * 119.13338 * 359.97438 * 27 7 6 29 29 N 1.31907 * 120.97602 * 0.02562 * 28 27 7 30 30 H 1.09001 * 109.47140 * 59.99962 * 1 2 3 31 31 H 1.09001 * 109.46820 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47293 * 299.99902 * 1 2 3 33 33 H 1.09004 * 109.47556 * 240.00080 * 2 1 3 34 34 H 1.09005 * 109.47091 * 180.02562 * 3 2 1 35 35 H 1.08992 * 109.47482 * 299.99942 * 3 2 1 36 36 H 1.09000 * 109.47045 * 60.00444 * 3 2 1 37 37 H 1.08004 * 120.52611 * 0.27855 * 6 5 4 38 38 H 1.08998 * 109.59182 * 353.41908 * 11 10 8 39 39 H 1.09006 * 109.58902 * 113.84591 * 11 10 8 40 40 H 1.09006 * 109.56610 * 185.55662 * 12 11 10 41 41 H 1.08998 * 109.38809 * 65.51579 * 12 11 10 42 42 H 1.08999 * 109.45645 * 301.21858 * 13 12 11 43 43 H 1.08994 * 109.46360 * 181.26440 * 13 12 11 44 44 H 1.09000 * 109.47401 * 95.17652 * 17 16 14 45 45 H 1.09001 * 109.46854 * 215.16697 * 17 16 14 46 46 H 1.08993 * 109.47486 * 335.17146 * 17 16 14 47 47 H 0.96995 * 119.99890 * 179.97438 * 21 20 18 48 48 H 1.09001 * 109.59020 * 246.15384 * 26 10 8 49 49 H 1.08997 * 109.58744 * 6.58487 * 26 10 8 50 50 H 1.07999 * 120.43654 * 180.02562 * 27 7 6 51 51 H 1.08003 * 119.51583 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2117 -2.0110 1.0652 6 6 2.6797 -2.7192 2.1645 7 6 2.8915 -4.0934 2.0427 8 6 3.3892 -4.8908 3.1879 9 8 2.8724 -5.9575 3.4556 10 7 4.4150 -4.4332 3.9328 11 6 4.9937 -3.1074 3.6756 12 6 6.5019 -3.2521 3.4811 13 6 7.1024 -3.9772 4.6876 14 6 6.4918 -5.3760 4.8002 15 1 6.6859 -5.9331 3.8835 16 7 7.0900 -6.0808 5.9366 17 6 6.9673 -5.5285 7.2879 18 6 7.7640 -7.2558 5.7357 19 1 8.1885 -7.4761 4.7674 20 6 7.9017 -8.1636 6.7767 21 7 7.2023 -8.0097 7.8810 22 14 9.0798 -9.6038 6.6104 23 1 10.4209 -9.2065 7.1094 24 1 8.5749 -10.7507 7.4070 25 1 9.1801 -9.9988 5.1824 26 6 4.9797 -5.2530 5.0133 27 6 2.6212 -4.6978 0.8096 28 6 2.1585 -3.9207 -0.2324 29 7 1.9699 -2.6240 -0.0806 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 2.8765 -2.2145 3.0989 38 1 4.5495 -2.6832 2.7751 39 1 4.7988 -2.4526 4.5250 40 1 6.9543 -2.2648 3.3878 41 1 6.6964 -3.8284 2.5765 42 1 6.8868 -3.4127 5.5947 43 1 8.1817 -4.0613 4.5605 44 1 6.1150 -5.9851 7.7911 45 1 7.8768 -5.7391 7.8505 46 1 6.8188 -4.4504 7.2277 47 1 7.2983 -8.6443 8.6083 48 1 4.7837 -4.7768 5.9740 49 1 4.5264 -6.2441 4.9951 50 1 2.7721 -5.7588 0.6756 51 1 1.9475 -4.3808 -1.1865 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027645235.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:55 Heat of formation + Delta-G solvation = -3.497461 kcal Electronic energy + Delta-G solvation = -31209.452096 eV Core-core repulsion = 27110.453655 eV Total energy + Delta-G solvation = -4098.998441 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.21127 -39.89497 -38.37933 -37.39369 -35.20137 -33.62944 -33.15954 -32.13076 -31.28666 -30.43641 -28.77288 -27.62814 -26.10596 -25.99663 -24.23963 -23.92076 -23.20359 -21.96638 -21.53187 -20.13421 -18.95435 -18.20981 -17.14900 -16.90011 -16.72370 -16.24407 -15.91922 -15.57608 -15.21133 -14.95769 -14.58591 -14.41066 -14.28707 -13.98031 -13.82559 -13.58567 -13.48114 -13.29887 -12.75405 -12.70273 -12.66907 -12.56218 -12.38336 -12.26139 -12.15940 -11.90751 -11.31042 -11.20124 -11.11312 -11.04716 -10.81445 -10.67996 -10.43156 -10.37339 -10.27935 -10.20153 -10.03079 -9.87484 -9.76731 -9.51243 -8.74850 -8.61047 -8.39133 -6.76474 -5.72891 -3.21006 0.61474 0.90306 2.58954 2.77080 3.08087 3.38933 3.44985 3.46542 3.53987 3.95754 4.31682 4.48228 4.50746 4.61654 4.67127 4.74262 4.87180 4.88977 4.94733 5.12199 5.18004 5.25290 5.32857 5.36279 5.38884 5.42902 5.47395 5.49383 5.54308 5.57981 5.72979 5.75230 5.82605 5.84612 5.90632 5.98112 6.08568 6.10393 6.20904 6.35071 6.46805 6.61309 6.75149 6.89677 6.94683 6.97676 7.36500 7.52299 7.53128 7.72395 7.80610 8.19977 8.39560 9.22478 9.84463 10.33353 11.31324 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021648 B = 0.002327 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.119934 B =12030.725314 C =12597.079598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.082 3.918 3 C -0.151 4.151 4 O -0.300 6.300 5 C 0.322 3.678 6 C -0.168 4.168 7 C -0.035 4.035 8 C 0.553 3.447 9 O -0.525 6.525 10 N -0.593 5.593 11 C 0.091 3.909 12 C -0.131 4.131 13 C -0.134 4.134 14 C 0.169 3.831 15 H 0.065 0.935 16 N -0.591 5.591 17 C 0.160 3.840 18 C -0.257 4.257 19 H 0.068 0.932 20 C 0.004 3.996 21 N -0.905 5.905 22 Si 0.906 3.094 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.279 1.279 26 C 0.098 3.902 27 C -0.164 4.164 28 C 0.140 3.860 29 N -0.532 5.532 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.151 0.849 38 H 0.090 0.910 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.031 0.969 45 H 0.042 0.958 46 H 0.000 1.000 47 H 0.253 0.747 48 H 0.065 0.935 49 H 0.093 0.907 50 H 0.147 0.853 51 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.197 18.427 -16.499 26.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.025 3.975 3 C -0.208 4.208 4 O -0.208 6.208 5 C 0.143 3.857 6 C -0.189 4.189 7 C -0.046 4.046 8 C 0.339 3.661 9 O -0.402 6.402 10 N -0.326 5.326 11 C -0.032 4.032 12 C -0.170 4.170 13 C -0.173 4.173 14 C 0.059 3.941 15 H 0.083 0.917 16 N -0.312 5.312 17 C 0.016 3.984 18 C -0.386 4.386 19 H 0.086 0.914 20 C -0.195 4.195 21 N -0.550 5.550 22 Si 0.736 3.264 23 H -0.215 1.215 24 H -0.217 1.217 25 H -0.205 1.205 26 C -0.025 4.025 27 C -0.185 4.185 28 C -0.015 4.015 29 N -0.256 5.256 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.168 0.832 38 H 0.108 0.892 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.050 0.950 45 H 0.060 0.940 46 H 0.018 0.982 47 H 0.063 0.937 48 H 0.083 0.917 49 H 0.111 0.889 50 H 0.164 0.836 51 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -10.711 18.409 -16.603 27.006 hybrid contribution 0.805 -1.282 0.592 1.625 sum -9.906 17.128 -16.011 25.453 Atomic orbital electron populations 1.22221 0.94893 1.02936 1.02599 1.22354 0.94389 0.92789 0.87929 1.21913 1.02094 0.93825 1.03008 1.86309 1.80115 1.15645 1.38728 1.19584 0.91719 0.84844 0.89550 1.21295 1.04939 0.92895 0.99760 1.20249 0.96652 0.92716 0.95008 1.18165 0.80610 0.85377 0.81929 1.90825 1.57240 1.22167 1.69942 1.48236 1.32358 1.18100 1.33877 1.22139 0.94848 0.84148 1.02067 1.21830 0.94349 1.00940 0.99846 1.22100 1.00678 0.97882 0.96675 1.20638 0.89081 0.91721 0.92619 0.91686 1.43932 1.61343 1.24019 1.01954 1.20811 1.01014 0.91069 0.85536 1.19213 1.26940 0.94558 0.97904 0.91396 1.25077 0.99248 0.97711 0.97450 1.70054 1.41143 1.37442 1.06354 0.86225 0.80574 0.82042 0.77510 1.21492 1.21697 1.20468 1.22665 0.96397 0.95860 0.87614 1.22070 1.01787 1.02271 0.92350 1.22379 0.92955 0.87391 0.98795 1.67119 1.21038 1.12952 1.24493 0.91112 0.91966 0.91952 0.89200 0.91716 0.90505 0.91573 0.83169 0.89185 0.91054 0.91097 0.91781 0.92160 0.91608 0.95036 0.93950 0.98159 0.93674 0.91669 0.88859 0.83564 0.81672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 9.53 37.16 0.35 -0.87 16 2 C 0.08 0.66 3.11 -26.73 -0.08 0.58 16 3 C -0.15 -0.91 9.56 37.16 0.36 -0.55 16 4 O -0.30 -3.14 9.76 -18.75 -0.18 -3.33 16 5 C 0.32 3.62 7.45 -17.16 -0.13 3.49 16 6 C -0.17 -1.93 7.37 -38.84 -0.29 -2.22 16 7 C -0.04 -0.46 5.22 -104.68 -0.55 -1.01 16 8 C 0.55 9.11 7.35 -12.19 -0.09 9.02 16 9 O -0.53 -10.73 16.44 5.35 0.09 -10.64 16 10 N -0.59 -9.35 2.98 -174.03 -0.52 -9.87 16 11 C 0.09 1.10 5.22 -3.94 -0.02 1.08 16 12 C -0.13 -1.64 6.06 -26.83 -0.16 -1.81 16 13 C -0.13 -2.17 5.13 -26.69 -0.14 -2.30 16 14 C 0.17 3.39 2.74 -67.81 -0.19 3.21 16 15 H 0.06 1.38 7.87 -51.93 -0.41 0.98 16 16 N -0.59 -14.52 2.81 -173.35 -0.49 -15.01 16 17 C 0.16 3.85 7.91 59.85 0.47 4.32 16 18 C -0.26 -7.01 9.58 -15.06 -0.14 -7.16 16 19 H 0.07 1.83 7.82 -52.49 -0.41 1.42 16 20 C 0.00 0.11 5.13 -17.43 -0.09 0.02 16 21 N -0.91 -26.38 10.67 55.49 0.59 -25.78 16 22 Si 0.91 21.97 29.57 -169.99 -5.03 16.95 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C 0.10 1.88 5.78 -3.71 -0.02 1.86 16 27 C -0.16 -1.85 9.81 -39.03 -0.38 -2.23 16 28 C 0.14 1.33 11.17 -17.61 -0.20 1.14 16 29 N -0.53 -5.69 8.61 -13.38 -0.12 -5.81 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 0.77 6.98 -51.93 -0.36 0.40 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.15 1.56 6.60 -52.48 -0.35 1.22 16 38 H 0.09 0.96 4.20 -51.93 -0.22 0.74 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.97 6.71 -51.93 -0.35 0.62 16 43 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 44 H 0.03 0.83 7.33 -51.93 -0.38 0.45 16 45 H 0.04 1.10 7.35 -51.93 -0.38 0.72 16 46 H 0.00 0.00 6.45 -51.93 -0.34 -0.34 16 47 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 48 H 0.07 1.26 7.51 -51.93 -0.39 0.86 16 49 H 0.09 2.11 7.03 -51.93 -0.36 1.74 16 50 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 51 H 0.17 1.02 8.06 -52.48 -0.42 0.59 16 LS Contribution 402.00 15.07 6.06 6.06 Total: -1.00 -32.23 402.00 -9.04 -41.26 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -8.16 Total: -0.40 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: -1.29 Total: 6.57 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: -0.53 Total: -56.48 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.10 Total: -13.97 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.23 -9.04 -41.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027645235.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.767 kcal (2) G-P(sol) polarization free energy of solvation -32.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds