Wall clock time and date at job start Wed Apr 1 2020 04:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46935 * 2 1 4 4 O 1.42898 * 109.47343 * 120.00265 * 2 1 3 5 5 C 1.35684 * 117.00251 * 89.99995 * 4 2 1 6 6 C 1.38889 * 119.62478 * 179.72865 * 5 4 2 7 7 C 1.39573 * 118.95016 * 180.27873 * 6 5 4 8 8 C 1.48161 * 120.89391 * 180.02562 * 7 6 5 9 9 O 1.21514 * 119.99333 * 134.81241 * 8 7 6 10 10 N 1.34775 * 120.00448 * 314.81581 * 8 7 6 11 11 C 1.46924 * 120.62645 * 3.93566 * 10 8 7 12 12 C 1.52756 * 109.00595 * 233.58301 * 11 10 8 13 13 C 1.53042 * 109.38656 * 305.58986 * 12 11 10 14 14 C 1.53041 * 109.53788 * 61.23786 * 13 12 11 15 15 H 1.09005 * 109.52246 * 58.60531 * 14 13 12 16 16 N 1.46498 * 109.49988 * 178.68733 * 14 13 12 17 17 C 1.46498 * 119.99700 * 59.83677 * 16 14 13 18 18 C 1.36937 * 119.99876 * 239.83926 * 16 14 13 19 19 H 1.07999 * 120.00010 * 23.67107 * 18 16 14 20 20 C 1.38812 * 119.99879 * 203.66689 * 18 16 14 21 21 N 1.31617 * 120.00133 * 11.49030 * 20 18 16 22 22 Si 1.86807 * 119.99868 * 191.49465 * 20 18 16 23 23 H 1.48504 * 109.47059 * 89.99892 * 22 20 18 24 24 H 1.48497 * 109.46591 * 210.00023 * 22 20 18 25 25 H 1.48500 * 109.47042 * 329.99873 * 22 20 18 26 26 C 1.46920 * 120.63062 * 184.21188 * 10 8 7 27 27 C 1.39966 * 118.21548 * 0.02562 * 7 6 5 28 28 C 1.37979 * 119.13338 * 359.97438 * 27 7 6 29 29 N 1.31907 * 120.97602 * 0.02562 * 28 27 7 30 30 H 1.09001 * 109.47140 * 59.99962 * 1 2 3 31 31 H 1.09001 * 109.46820 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47293 * 299.99902 * 1 2 3 33 33 H 1.09004 * 109.47556 * 240.00080 * 2 1 3 34 34 H 1.09005 * 109.47091 * 180.02562 * 3 2 1 35 35 H 1.08992 * 109.47482 * 299.99942 * 3 2 1 36 36 H 1.09000 * 109.47045 * 60.00444 * 3 2 1 37 37 H 1.08004 * 120.52611 * 0.27855 * 6 5 4 38 38 H 1.08998 * 109.59182 * 353.41908 * 11 10 8 39 39 H 1.09006 * 109.58902 * 113.84591 * 11 10 8 40 40 H 1.09006 * 109.56610 * 185.55662 * 12 11 10 41 41 H 1.08998 * 109.38809 * 65.51579 * 12 11 10 42 42 H 1.08999 * 109.45645 * 301.21858 * 13 12 11 43 43 H 1.08994 * 109.46360 * 181.26440 * 13 12 11 44 44 H 1.09000 * 109.47401 * 95.17652 * 17 16 14 45 45 H 1.09001 * 109.46854 * 215.16697 * 17 16 14 46 46 H 1.08993 * 109.47486 * 335.17146 * 17 16 14 47 47 H 0.96995 * 119.99890 * 179.97438 * 21 20 18 48 48 H 1.09001 * 109.59020 * 246.15384 * 26 10 8 49 49 H 1.08997 * 109.58744 * 6.58487 * 26 10 8 50 50 H 1.07999 * 120.43654 * 180.02562 * 27 7 6 51 51 H 1.08003 * 119.51583 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2117 -2.0110 1.0652 6 6 2.6797 -2.7192 2.1645 7 6 2.8915 -4.0934 2.0427 8 6 3.3892 -4.8908 3.1879 9 8 2.8724 -5.9575 3.4556 10 7 4.4150 -4.4332 3.9328 11 6 4.9937 -3.1074 3.6756 12 6 6.5019 -3.2521 3.4811 13 6 7.1024 -3.9772 4.6876 14 6 6.4918 -5.3760 4.8002 15 1 6.6859 -5.9331 3.8835 16 7 7.0900 -6.0808 5.9366 17 6 6.9673 -5.5285 7.2879 18 6 7.7640 -7.2558 5.7357 19 1 8.1885 -7.4761 4.7674 20 6 7.9017 -8.1636 6.7767 21 7 7.2023 -8.0097 7.8810 22 14 9.0798 -9.6038 6.6104 23 1 10.4209 -9.2065 7.1094 24 1 8.5749 -10.7507 7.4070 25 1 9.1801 -9.9988 5.1824 26 6 4.9797 -5.2530 5.0133 27 6 2.6212 -4.6978 0.8096 28 6 2.1585 -3.9207 -0.2324 29 7 1.9699 -2.6240 -0.0806 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 2.8765 -2.2145 3.0989 38 1 4.5495 -2.6832 2.7751 39 1 4.7988 -2.4526 4.5250 40 1 6.9543 -2.2648 3.3878 41 1 6.6964 -3.8284 2.5765 42 1 6.8868 -3.4127 5.5947 43 1 8.1817 -4.0613 4.5605 44 1 6.1150 -5.9851 7.7911 45 1 7.8768 -5.7391 7.8505 46 1 6.8188 -4.4504 7.2277 47 1 7.2983 -8.6443 8.6083 48 1 4.7837 -4.7768 5.9740 49 1 4.5264 -6.2441 4.9951 50 1 2.7721 -5.7588 0.6756 51 1 1.9475 -4.3808 -1.1865 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027645235.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:54 Heat of formation + Delta-G solvation = -23.829750 kcal Electronic energy + Delta-G solvation = -31210.333770 eV Core-core repulsion = 27110.453655 eV Total energy + Delta-G solvation = -4099.880116 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.17328 -41.03409 -39.33240 -38.76102 -36.88790 -34.47876 -34.21958 -33.44450 -32.89936 -31.29609 -30.39060 -28.12377 -28.06258 -27.27575 -25.55968 -25.05864 -24.36694 -23.13386 -22.60060 -21.27040 -20.32320 -19.27558 -18.76309 -18.16587 -17.82039 -17.20619 -17.00865 -16.80361 -16.64769 -16.20513 -15.70523 -15.56098 -15.39907 -15.25888 -14.99544 -14.79920 -14.69862 -14.42975 -14.16760 -13.97645 -13.88842 -13.54579 -13.25633 -13.14761 -13.09223 -12.92960 -12.83488 -12.82316 -12.50214 -12.23788 -12.16687 -12.13346 -11.91738 -11.81152 -11.74733 -11.72347 -11.42060 -11.41018 -10.93572 -10.66906 -10.56555 -9.82106 -9.55855 -8.78213 -7.84808 -5.35340 -0.32827 0.06277 1.43174 1.44894 1.47585 1.54277 1.72520 2.02807 2.48747 2.65174 3.13823 3.28216 3.32252 3.57630 3.82302 3.87410 3.95934 3.98676 4.02017 4.04753 4.07568 4.08641 4.19680 4.32482 4.33352 4.53023 4.55611 4.60534 4.67989 4.73797 4.74395 4.83518 4.87135 4.88897 4.90811 4.93875 4.98824 5.02913 5.12364 5.23068 5.25414 5.31092 5.34807 5.37981 5.39736 5.52839 5.61775 5.71528 6.22199 6.24971 6.31149 6.71040 6.90126 7.12955 7.83823 8.26787 9.17266 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021648 B = 0.002327 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.119934 B =12030.725314 C =12597.079598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.075 3.925 3 C -0.147 4.147 4 O -0.308 6.308 5 C 0.320 3.680 6 C -0.167 4.167 7 C -0.047 4.047 8 C 0.551 3.449 9 O -0.577 6.577 10 N -0.591 5.591 11 C 0.088 3.912 12 C -0.122 4.122 13 C -0.123 4.123 14 C 0.168 3.832 15 H 0.046 0.954 16 N -0.608 5.608 17 C 0.178 3.822 18 C -0.265 4.265 19 H 0.067 0.933 20 C -0.052 4.052 21 N -0.936 5.936 22 Si 0.970 3.030 23 H -0.282 1.282 24 H -0.296 1.296 25 H -0.271 1.271 26 C 0.114 3.886 27 C -0.171 4.171 28 C 0.153 3.847 29 N -0.533 5.533 30 H 0.090 0.910 31 H 0.045 0.955 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.062 0.938 35 H 0.096 0.904 36 H 0.065 0.935 37 H 0.161 0.839 38 H 0.112 0.888 39 H 0.092 0.908 40 H 0.109 0.891 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.001 0.999 45 H 0.016 0.984 46 H 0.037 0.963 47 H 0.248 0.752 48 H 0.065 0.935 49 H 0.049 0.951 50 H 0.147 0.853 51 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.172 21.279 -18.990 30.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.019 3.981 3 C -0.204 4.204 4 O -0.215 6.215 5 C 0.141 3.859 6 C -0.188 4.188 7 C -0.058 4.058 8 C 0.339 3.661 9 O -0.457 6.457 10 N -0.322 5.322 11 C -0.033 4.033 12 C -0.160 4.160 13 C -0.162 4.162 14 C 0.060 3.940 15 H 0.064 0.936 16 N -0.330 5.330 17 C 0.033 3.967 18 C -0.395 4.395 19 H 0.085 0.915 20 C -0.248 4.248 21 N -0.583 5.583 22 Si 0.798 3.202 23 H -0.208 1.208 24 H -0.222 1.222 25 H -0.196 1.196 26 C -0.011 4.011 27 C -0.192 4.192 28 C -0.002 4.002 29 N -0.257 5.257 30 H 0.109 0.891 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.115 0.885 36 H 0.085 0.915 37 H 0.179 0.821 38 H 0.130 0.870 39 H 0.110 0.890 40 H 0.127 0.873 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.019 0.981 45 H 0.035 0.965 46 H 0.056 0.944 47 H 0.058 0.942 48 H 0.083 0.917 49 H 0.067 0.933 50 H 0.164 0.836 51 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -10.678 21.335 -19.138 30.585 hybrid contribution 0.721 -2.090 1.254 2.542 sum -9.957 19.244 -17.885 28.095 Atomic orbital electron populations 1.22206 0.94355 1.02164 1.03592 1.22605 0.94882 0.93630 0.86974 1.21924 1.02012 0.92460 1.04023 1.86306 1.80049 1.15178 1.40003 1.19655 0.91412 0.85322 0.89486 1.21281 1.05042 0.92092 1.00435 1.19942 0.98492 0.93183 0.94207 1.18717 0.80052 0.84960 0.82347 1.90794 1.58919 1.24614 1.71343 1.48231 1.32202 1.19030 1.32762 1.22460 0.94563 0.82252 1.04036 1.21809 0.94299 1.02306 0.97612 1.21933 1.00142 0.95203 0.98901 1.20779 0.89545 0.93518 0.90185 0.93553 1.44148 1.61882 1.23824 1.03168 1.20521 0.98371 0.92858 0.84963 1.19516 1.26785 0.95444 0.97765 0.91504 1.25846 1.01108 1.00412 0.97400 1.70224 1.42753 1.38334 1.06960 0.85229 0.78596 0.78766 0.77627 1.20847 1.22223 1.19555 1.22119 0.95639 0.94448 0.88894 1.22215 1.02034 1.02625 0.92319 1.22903 0.91048 0.86785 0.99476 1.67237 1.20808 1.13348 1.24303 0.89129 0.93558 0.91991 0.89543 0.91842 0.88508 0.91546 0.82132 0.87008 0.88956 0.87273 0.92096 0.91521 0.92214 0.98062 0.96541 0.94432 0.94230 0.91716 0.93277 0.83555 0.78063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.03 9.53 71.98 0.69 -1.34 16 2 C 0.07 1.02 3.11 30.59 0.10 1.12 16 3 C -0.15 -1.35 9.56 71.98 0.69 -0.66 16 4 O -0.31 -5.71 9.76 -90.02 -0.88 -6.58 16 5 C 0.32 6.45 7.45 84.80 0.63 7.09 16 6 C -0.17 -3.52 7.37 22.75 0.17 -3.36 16 7 C -0.05 -1.20 5.22 -19.90 -0.10 -1.30 16 8 C 0.55 18.44 7.35 86.88 0.64 19.08 16 9 O -0.58 -24.78 16.44 -3.76 -0.06 -24.85 16 10 N -0.59 -18.50 2.98 -822.81 -2.45 -20.95 16 11 C 0.09 1.90 5.22 86.22 0.45 2.35 16 12 C -0.12 -2.67 6.06 30.53 0.19 -2.49 16 13 C -0.12 -3.75 5.13 30.62 0.16 -3.60 16 14 C 0.17 6.83 2.74 45.07 0.12 6.96 16 15 H 0.05 2.03 7.87 -2.38 -0.02 2.01 16 16 N -0.61 -30.67 2.81 -702.35 -1.98 -32.64 16 17 C 0.18 8.75 7.91 127.77 1.01 9.76 16 18 C -0.26 -14.87 9.58 84.03 0.81 -14.07 16 19 H 0.07 3.68 7.82 -2.91 -0.02 3.66 16 20 C -0.05 -3.00 5.13 84.86 0.44 -2.57 16 21 N -0.94 -56.59 10.67 21.65 0.23 -56.36 16 22 Si 0.97 46.18 29.57 68.60 2.03 48.21 16 23 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 24 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 25 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 26 C 0.11 4.50 5.78 86.37 0.50 5.00 16 27 C -0.17 -3.65 9.81 22.63 0.22 -3.43 16 28 C 0.15 2.52 11.17 84.62 0.94 3.47 16 29 N -0.53 -10.05 8.61 -309.14 -2.66 -12.71 16 30 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.09 1.25 6.98 -2.38 -0.02 1.23 16 34 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 35 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.07 0.61 8.14 -2.39 -0.02 0.60 16 37 H 0.16 2.95 6.60 -2.91 -0.02 2.93 16 38 H 0.11 2.03 4.20 -2.39 -0.01 2.02 16 39 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 40 H 0.11 1.70 8.14 -2.38 -0.02 1.68 16 41 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.07 1.97 6.71 -2.39 -0.02 1.96 16 43 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.00 0.06 7.33 -2.39 -0.02 0.04 16 45 H 0.02 0.86 7.35 -2.39 -0.02 0.84 16 46 H 0.04 1.53 6.45 -2.39 -0.02 1.51 16 47 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 48 H 0.06 2.55 7.51 -2.39 -0.02 2.53 16 49 H 0.05 2.38 7.03 -2.39 -0.02 2.36 16 50 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 51 H 0.20 1.75 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -74.01 402.00 2.79 -71.22 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 0.92 Total: 12.65 kcal Atomic # 6 Polarization: 14.38 SS G_CDS: 7.64 Total: 22.02 kcal Atomic # 7 Polarization: -115.81 SS G_CDS: -6.86 Total: -122.66 kcal Atomic # 8 Polarization: -30.49 SS G_CDS: -0.94 Total: -31.43 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -74.01 2.79 -71.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027645235.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.388 kcal (2) G-P(sol) polarization free energy of solvation -74.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds