Wall clock time and date at job start Wed Apr 1 2020 04:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47117 * 2 1 4 4 O 1.42907 * 109.47078 * 119.99330 * 2 1 3 5 5 C 1.35722 * 116.99959 * 154.89047 * 4 2 1 6 6 C 1.39225 * 120.38169 * 4.84649 * 5 4 2 7 7 C 1.38328 * 118.44229 * 179.72464 * 6 5 4 8 8 C 1.39464 * 119.13065 * 0.49425 * 7 6 5 9 9 C 1.47930 * 119.65502 * 179.77197 * 8 7 6 10 10 O 1.21546 * 120.00011 * 22.39976 * 9 8 7 11 11 N 1.34772 * 119.99989 * 202.39947 * 9 8 7 12 12 C 1.46934 * 120.60383 * 179.89266 * 11 9 8 13 13 C 1.53190 * 108.77493 * 233.53440 * 12 11 9 14 14 C 1.53047 * 109.34073 * 305.41984 * 13 12 11 15 15 C 1.53035 * 109.53893 * 61.34449 * 14 13 12 16 16 H 1.09005 * 109.49981 * 58.61736 * 15 14 13 17 17 N 1.46497 * 109.49742 * 178.68720 * 15 14 13 18 18 C 1.46498 * 120.00309 * 59.99977 * 17 15 14 19 19 C 1.36934 * 119.99800 * 239.99865 * 17 15 14 20 20 H 1.08003 * 120.00490 * 30.87403 * 19 17 15 21 21 C 1.38811 * 120.00330 * 210.87328 * 19 17 15 22 22 N 1.31626 * 119.99833 * 6.97328 * 21 19 17 23 23 Si 1.86802 * 120.00415 * 186.97659 * 21 19 17 24 24 H 1.48502 * 109.46625 * 60.00009 * 23 21 19 25 25 H 1.48500 * 109.47420 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47175 * 300.00266 * 23 21 19 27 27 C 1.46924 * 120.62999 * 359.87792 * 11 9 8 28 28 N 1.32798 * 120.68851 * 359.49102 * 8 7 6 29 29 C 1.31374 * 121.68964 * 0.25987 * 28 8 7 30 30 H 1.08999 * 109.47292 * 300.00594 * 1 2 3 31 31 H 1.09004 * 109.46956 * 60.00351 * 1 2 3 32 32 H 1.09003 * 109.47099 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.47575 * 239.99453 * 2 1 3 34 34 H 1.08999 * 109.46964 * 299.99202 * 3 2 1 35 35 H 1.09002 * 109.47032 * 59.99665 * 3 2 1 36 36 H 1.09000 * 109.46720 * 179.97438 * 3 2 1 37 37 H 1.08001 * 120.78116 * 359.97438 * 6 5 4 38 38 H 1.07995 * 120.43260 * 180.26333 * 7 6 5 39 39 H 1.09011 * 109.55911 * 113.77006 * 12 11 9 40 40 H 1.08994 * 109.61667 * 353.34109 * 12 11 9 41 41 H 1.08995 * 109.49939 * 185.44835 * 13 12 11 42 42 H 1.08998 * 109.49401 * 65.38156 * 13 12 11 43 43 H 1.08995 * 109.45902 * 181.36810 * 14 13 12 44 44 H 1.09000 * 109.45546 * 301.32403 * 14 13 12 45 45 H 1.09002 * 109.47152 * 85.24392 * 18 17 15 46 46 H 1.08995 * 109.47073 * 205.24702 * 18 17 15 47 47 H 1.08996 * 109.47022 * 325.24797 * 18 17 15 48 48 H 0.96998 * 120.00020 * 179.97438 * 22 21 19 49 49 H 1.08999 * 109.58845 * 6.63747 * 27 11 9 50 50 H 1.09006 * 109.58474 * 246.21839 * 27 11 9 51 51 H 1.08005 * 119.59134 * 179.97438 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 3.2441 -1.2259 1.0974 6 6 4.0353 -1.0409 -0.0332 7 6 5.2925 -1.6171 -0.0589 8 6 5.7180 -2.3676 1.0368 9 6 7.0584 -2.9932 1.0195 10 8 7.9258 -2.5516 0.2915 11 7 7.3178 -4.0528 1.8109 12 6 8.6437 -4.6859 1.8026 13 6 8.4723 -6.1856 1.5417 14 6 7.5018 -6.7713 2.5701 15 6 6.1357 -6.0968 2.4266 16 1 5.7591 -6.2492 1.4151 17 7 5.1989 -6.6800 3.3902 18 6 5.4819 -6.6034 4.8255 19 6 4.0586 -7.2967 2.9492 20 1 4.0509 -7.7974 1.9922 21 6 2.9124 -7.2786 3.7320 22 7 2.8777 -6.5553 4.8313 23 14 1.4193 -8.2805 3.2257 24 1 1.7867 -9.7179 3.1608 25 1 0.3351 -8.0917 4.2227 26 1 0.9496 -7.8289 1.8913 27 6 6.2804 -4.5961 2.6982 28 7 4.9346 -2.5218 2.0980 29 6 3.7375 -1.9837 2.1561 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8898 34 1 1.6768 1.9563 -0.8901 35 1 1.6766 1.9564 0.8900 36 1 3.1300 1.4425 0.0005 37 1 3.6774 -0.4577 -0.8688 38 1 5.9347 -1.4906 -0.9179 39 1 9.1259 -4.5358 2.7687 40 1 9.2546 -4.2454 1.0146 41 1 9.4384 -6.6828 1.6288 42 1 8.0743 -6.3372 0.5384 43 1 7.3973 -7.8430 2.4014 44 1 7.8888 -6.5980 3.5743 45 1 5.1226 -5.6514 5.2164 46 1 4.9769 -7.4211 5.3396 47 1 6.5569 -6.6805 4.9885 48 1 2.0766 -6.5423 5.3781 49 1 5.3323 -4.0959 2.5012 50 1 6.5696 -4.4391 3.7375 51 1 3.1286 -2.1313 3.0358 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027705413.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:13 Heat of formation + Delta-G solvation = 1.790566 kcal Electronic energy + Delta-G solvation = -31894.553715 eV Core-core repulsion = 27795.784580 eV Total energy + Delta-G solvation = -4098.769135 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.02569 -39.78574 -38.31415 -37.27786 -34.82387 -33.64985 -32.73705 -32.02943 -31.36578 -30.16010 -28.57745 -27.64195 -25.91856 -25.58988 -24.19066 -23.64274 -23.22495 -21.78546 -21.25747 -19.86617 -18.89377 -18.43337 -17.37524 -16.82897 -16.47846 -15.86171 -15.80204 -15.19062 -14.95123 -14.69726 -14.67326 -14.36300 -13.93496 -13.85769 -13.67794 -13.41044 -13.37771 -13.20632 -12.77987 -12.62095 -12.57442 -12.50583 -12.43005 -12.16381 -11.92842 -11.74559 -11.28909 -11.16368 -11.00874 -10.91485 -10.75764 -10.49318 -10.39876 -10.33486 -10.26017 -10.01005 -9.84790 -9.82283 -9.69384 -8.79029 -8.50233 -8.47994 -8.15616 -6.57592 -5.72212 -3.22981 0.81007 1.15879 2.82024 2.92735 3.28728 3.39151 3.44017 3.45196 3.89201 4.34821 4.36972 4.49048 4.52137 4.56631 4.63846 4.76165 4.93133 5.05594 5.18197 5.24490 5.33370 5.35228 5.35612 5.40659 5.43890 5.52656 5.69481 5.73167 5.76076 5.81060 5.82210 5.88331 5.89034 5.96355 6.10105 6.15293 6.25303 6.30890 6.42051 6.51736 6.66632 6.84063 6.95367 7.08009 7.09075 7.25953 7.41939 7.72179 7.74534 7.83112 7.88452 8.42472 8.49805 9.28067 9.88819 10.43028 11.33423 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007664 B = 0.004378 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3652.409212 B = 6393.446332 C = 9395.454430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.073 3.927 3 C -0.181 4.181 4 O -0.298 6.298 5 C 0.104 3.896 6 C -0.180 4.180 7 C -0.073 4.073 8 C 0.039 3.961 9 C 0.574 3.426 10 O -0.557 6.557 11 N -0.584 5.584 12 C 0.111 3.889 13 C -0.129 4.129 14 C -0.135 4.135 15 C 0.166 3.834 16 H 0.059 0.941 17 N -0.587 5.587 18 C 0.161 3.839 19 C -0.258 4.258 20 H 0.062 0.938 21 C 0.012 3.988 22 N -0.901 5.901 23 Si 0.901 3.099 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.284 1.284 27 C 0.066 3.934 28 N -0.394 5.394 29 C 0.080 3.920 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.065 0.935 40 H 0.086 0.914 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.020 0.980 46 H 0.050 0.950 47 H -0.005 1.005 48 H 0.253 0.747 49 H 0.139 0.861 50 H 0.061 0.939 51 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.242 13.224 -9.077 16.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.017 3.983 3 C -0.238 4.238 4 O -0.210 6.210 5 C 0.055 3.945 6 C -0.206 4.206 7 C -0.094 4.094 8 C -0.098 4.098 9 C 0.361 3.639 10 O -0.436 6.436 11 N -0.314 5.314 12 C -0.012 4.012 13 C -0.168 4.168 14 C -0.175 4.175 15 C 0.057 3.943 16 H 0.078 0.922 17 N -0.309 5.309 18 C 0.017 3.983 19 C -0.388 4.388 20 H 0.079 0.921 21 C -0.188 4.188 22 N -0.544 5.544 23 Si 0.730 3.270 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.210 1.210 27 C -0.057 4.057 28 N -0.106 5.106 29 C -0.081 4.081 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.162 0.838 38 H 0.164 0.836 39 H 0.083 0.917 40 H 0.105 0.895 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.039 0.961 46 H 0.069 0.931 47 H 0.014 0.986 48 H 0.063 0.937 49 H 0.156 0.844 50 H 0.080 0.920 51 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 1.724 12.965 -8.445 15.568 hybrid contribution -1.222 -0.049 -0.973 1.563 sum 0.502 12.915 -9.418 15.992 Atomic orbital electron populations 1.21862 0.92080 1.03599 1.03122 1.22540 0.95832 0.92629 0.87315 1.22398 1.02189 0.95863 1.03377 1.86151 1.28642 1.67391 1.38798 1.20427 0.85366 0.93403 0.95284 1.21655 0.95418 1.04670 0.98897 1.21809 0.95112 0.93769 0.98673 1.21037 0.95567 1.00779 0.92413 1.17786 0.85918 0.80281 0.79930 1.90721 1.46493 1.64194 1.42192 1.48183 1.13608 1.29281 1.40368 1.21629 0.84254 0.93126 1.02177 1.21885 0.99905 0.94680 1.00304 1.22098 0.96822 1.00373 0.98169 1.20709 0.89375 0.89893 0.94341 0.92232 1.43771 1.21899 1.64177 1.01057 1.20738 0.92982 1.00489 0.84104 1.19091 0.87980 1.27179 1.04573 0.92053 1.25182 0.97118 0.98419 0.98045 1.70008 1.28023 1.41075 1.15335 0.86414 0.82779 0.80070 0.77696 1.21021 1.21581 1.20996 1.23638 0.92821 0.96743 0.92523 1.67862 1.03824 1.14400 1.24524 1.22525 0.92957 0.94546 0.98065 0.91245 0.90462 0.91291 0.90712 0.90844 0.91175 0.91807 0.83812 0.83619 0.91657 0.89536 0.91368 0.91932 0.91994 0.92303 0.96145 0.93081 0.98642 0.93651 0.84435 0.92030 0.80978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.56 37.16 0.36 -0.74 16 2 C 0.07 0.64 2.85 -26.73 -0.08 0.56 16 3 C -0.18 -1.29 9.20 37.16 0.34 -0.95 16 4 O -0.30 -3.65 9.80 -18.87 -0.18 -3.83 16 5 C 0.10 1.40 6.63 -38.84 -0.26 1.14 16 6 C -0.18 -2.16 8.34 -39.18 -0.33 -2.48 16 7 C -0.07 -1.01 9.61 -39.09 -0.38 -1.39 16 8 C 0.04 0.65 6.43 -83.02 -0.53 0.12 16 9 C 0.57 10.45 7.60 -12.29 -0.09 10.35 16 10 O -0.56 -10.76 15.94 5.32 0.08 -10.67 16 11 N -0.58 -10.40 2.97 -173.84 -0.52 -10.91 16 12 C 0.11 1.69 6.43 -3.71 -0.02 1.67 16 13 C -0.13 -1.90 6.08 -26.61 -0.16 -2.06 16 14 C -0.14 -2.38 5.11 -26.69 -0.14 -2.52 16 15 C 0.17 3.47 2.75 -67.81 -0.19 3.29 16 16 H 0.06 1.33 7.89 -51.93 -0.41 0.92 16 17 N -0.59 -14.51 2.79 -173.35 -0.48 -14.99 16 18 C 0.16 3.91 7.98 59.85 0.48 4.39 16 19 C -0.26 -7.02 9.49 -15.06 -0.14 -7.16 16 20 H 0.06 1.66 7.84 -52.48 -0.41 1.25 16 21 C 0.01 0.32 5.14 -17.43 -0.09 0.23 16 22 N -0.90 -25.58 10.96 55.49 0.61 -24.97 16 23 Si 0.90 21.58 29.56 -169.99 -5.02 16.56 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 27 C 0.07 1.30 5.34 -3.71 -0.02 1.28 16 28 N -0.39 -6.93 6.39 -9.68 -0.06 -6.99 16 29 C 0.08 1.26 11.14 -17.38 -0.19 1.07 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.59 6.30 -51.93 -0.33 0.27 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.49 6.99 -51.93 -0.36 0.13 16 37 H 0.14 1.27 5.60 -52.49 -0.29 0.97 16 38 H 0.15 1.81 7.80 -52.49 -0.41 1.40 16 39 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 40 H 0.09 1.30 7.00 -51.93 -0.36 0.94 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.06 1.04 6.75 -51.93 -0.35 0.69 16 45 H 0.02 0.52 7.76 -51.93 -0.40 0.12 16 46 H 0.05 1.34 7.07 -51.93 -0.37 0.97 16 47 H 0.00 -0.10 6.48 -51.93 -0.34 -0.44 16 48 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 49 H 0.14 2.94 4.02 -77.11 -0.31 2.63 16 50 H 0.06 1.26 7.51 -51.93 -0.39 0.87 16 51 H 0.17 2.61 8.06 -52.48 -0.42 2.18 16 LS Contribution 398.07 15.07 6.00 6.00 Total: -1.00 -31.19 398.07 -9.12 -40.31 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -8.10 Total: 2.71 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -1.44 Total: 6.79 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: -0.45 Total: -57.87 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.10 Total: -14.50 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.19 -9.12 -40.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027705413.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.103 kcal (2) G-P(sol) polarization free energy of solvation -31.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds