Wall clock time and date at job start Wed Apr 1 2020 04:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47117 * 2 1 4 4 O 1.42907 * 109.47078 * 119.99330 * 2 1 3 5 5 C 1.35722 * 116.99959 * 154.89047 * 4 2 1 6 6 C 1.39225 * 120.38169 * 4.84649 * 5 4 2 7 7 C 1.38328 * 118.44229 * 179.72464 * 6 5 4 8 8 C 1.39464 * 119.13065 * 0.49425 * 7 6 5 9 9 C 1.47930 * 119.65502 * 179.77197 * 8 7 6 10 10 O 1.21546 * 120.00011 * 22.39976 * 9 8 7 11 11 N 1.34772 * 119.99989 * 202.39947 * 9 8 7 12 12 C 1.46934 * 120.60383 * 179.89266 * 11 9 8 13 13 C 1.53190 * 108.77493 * 233.53440 * 12 11 9 14 14 C 1.53047 * 109.34073 * 305.41984 * 13 12 11 15 15 C 1.53035 * 109.53893 * 61.34449 * 14 13 12 16 16 H 1.09005 * 109.49981 * 58.61736 * 15 14 13 17 17 N 1.46497 * 109.49742 * 178.68720 * 15 14 13 18 18 C 1.46498 * 120.00309 * 59.99977 * 17 15 14 19 19 C 1.36934 * 119.99800 * 239.99865 * 17 15 14 20 20 H 1.08003 * 120.00490 * 30.87403 * 19 17 15 21 21 C 1.38811 * 120.00330 * 210.87328 * 19 17 15 22 22 N 1.31626 * 119.99833 * 6.97328 * 21 19 17 23 23 Si 1.86802 * 120.00415 * 186.97659 * 21 19 17 24 24 H 1.48502 * 109.46625 * 60.00009 * 23 21 19 25 25 H 1.48500 * 109.47420 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47175 * 300.00266 * 23 21 19 27 27 C 1.46924 * 120.62999 * 359.87792 * 11 9 8 28 28 N 1.32798 * 120.68851 * 359.49102 * 8 7 6 29 29 C 1.31374 * 121.68964 * 0.25987 * 28 8 7 30 30 H 1.08999 * 109.47292 * 300.00594 * 1 2 3 31 31 H 1.09004 * 109.46956 * 60.00351 * 1 2 3 32 32 H 1.09003 * 109.47099 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.47575 * 239.99453 * 2 1 3 34 34 H 1.08999 * 109.46964 * 299.99202 * 3 2 1 35 35 H 1.09002 * 109.47032 * 59.99665 * 3 2 1 36 36 H 1.09000 * 109.46720 * 179.97438 * 3 2 1 37 37 H 1.08001 * 120.78116 * 359.97438 * 6 5 4 38 38 H 1.07995 * 120.43260 * 180.26333 * 7 6 5 39 39 H 1.09011 * 109.55911 * 113.77006 * 12 11 9 40 40 H 1.08994 * 109.61667 * 353.34109 * 12 11 9 41 41 H 1.08995 * 109.49939 * 185.44835 * 13 12 11 42 42 H 1.08998 * 109.49401 * 65.38156 * 13 12 11 43 43 H 1.08995 * 109.45902 * 181.36810 * 14 13 12 44 44 H 1.09000 * 109.45546 * 301.32403 * 14 13 12 45 45 H 1.09002 * 109.47152 * 85.24392 * 18 17 15 46 46 H 1.08995 * 109.47073 * 205.24702 * 18 17 15 47 47 H 1.08996 * 109.47022 * 325.24797 * 18 17 15 48 48 H 0.96998 * 120.00020 * 179.97438 * 22 21 19 49 49 H 1.08999 * 109.58845 * 6.63747 * 27 11 9 50 50 H 1.09006 * 109.58474 * 246.21839 * 27 11 9 51 51 H 1.08005 * 119.59134 * 179.97438 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 3.2441 -1.2259 1.0974 6 6 4.0353 -1.0409 -0.0332 7 6 5.2925 -1.6171 -0.0589 8 6 5.7180 -2.3676 1.0368 9 6 7.0584 -2.9932 1.0195 10 8 7.9258 -2.5516 0.2915 11 7 7.3178 -4.0528 1.8109 12 6 8.6437 -4.6859 1.8026 13 6 8.4723 -6.1856 1.5417 14 6 7.5018 -6.7713 2.5701 15 6 6.1357 -6.0968 2.4266 16 1 5.7591 -6.2492 1.4151 17 7 5.1989 -6.6800 3.3902 18 6 5.4819 -6.6034 4.8255 19 6 4.0586 -7.2967 2.9492 20 1 4.0509 -7.7974 1.9922 21 6 2.9124 -7.2786 3.7320 22 7 2.8777 -6.5553 4.8313 23 14 1.4193 -8.2805 3.2257 24 1 1.7867 -9.7179 3.1608 25 1 0.3351 -8.0917 4.2227 26 1 0.9496 -7.8289 1.8913 27 6 6.2804 -4.5961 2.6982 28 7 4.9346 -2.5218 2.0980 29 6 3.7375 -1.9837 2.1561 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8898 34 1 1.6768 1.9563 -0.8901 35 1 1.6766 1.9564 0.8900 36 1 3.1300 1.4425 0.0005 37 1 3.6774 -0.4577 -0.8688 38 1 5.9347 -1.4906 -0.9179 39 1 9.1259 -4.5358 2.7687 40 1 9.2546 -4.2454 1.0146 41 1 9.4384 -6.6828 1.6288 42 1 8.0743 -6.3372 0.5384 43 1 7.3973 -7.8430 2.4014 44 1 7.8888 -6.5980 3.5743 45 1 5.1226 -5.6514 5.2164 46 1 4.9769 -7.4211 5.3396 47 1 6.5569 -6.6805 4.9885 48 1 2.0766 -6.5423 5.3781 49 1 5.3323 -4.0959 2.5012 50 1 6.5696 -4.4391 3.7375 51 1 3.1286 -2.1313 3.0358 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027705413.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:12 Heat of formation + Delta-G solvation = -15.642666 kcal Electronic energy + Delta-G solvation = -31895.309677 eV Core-core repulsion = 27795.784580 eV Total energy + Delta-G solvation = -4099.525097 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.18314 -41.00934 -39.46165 -38.80559 -36.59386 -34.45537 -34.01442 -33.45313 -32.98361 -31.35527 -30.27237 -28.21533 -27.95987 -26.90319 -25.34303 -25.20752 -24.63937 -23.02482 -22.32839 -21.32267 -20.30691 -19.40583 -18.85390 -18.45690 -17.90577 -17.16657 -16.95859 -16.67962 -16.23634 -16.05732 -15.82138 -15.59688 -15.46715 -15.17165 -15.00965 -14.83460 -14.54462 -14.37362 -14.17511 -13.91258 -13.83285 -13.47994 -13.41815 -13.31655 -13.14797 -12.87694 -12.79035 -12.75451 -12.48473 -12.19567 -12.18541 -12.08966 -12.00356 -11.88476 -11.67607 -11.57982 -11.41347 -11.36931 -10.92692 -10.59269 -10.09828 -9.76864 -9.47800 -8.57506 -7.81104 -5.34697 -0.36037 0.05911 1.46572 1.47636 1.54401 1.58275 1.87749 2.04128 2.51608 2.67842 3.07756 3.34312 3.44515 3.55198 3.71029 3.76716 3.86095 3.95668 3.98819 4.03830 4.07411 4.12520 4.21451 4.32001 4.45565 4.55402 4.63384 4.67297 4.70154 4.76185 4.78472 4.84519 4.85871 4.86368 4.88568 5.00567 5.05900 5.07326 5.13991 5.22036 5.24851 5.27099 5.33189 5.47098 5.53060 5.66162 5.70593 5.77316 6.16310 6.30409 6.42569 6.63877 7.05620 7.20439 7.89298 8.38081 9.22311 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007664 B = 0.004378 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3652.409212 B = 6393.446332 C = 9395.454430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.060 3.940 3 C -0.177 4.177 4 O -0.311 6.311 5 C 0.116 3.884 6 C -0.165 4.165 7 C -0.065 4.065 8 C 0.007 3.993 9 C 0.571 3.429 10 O -0.570 6.570 11 N -0.587 5.587 12 C 0.106 3.894 13 C -0.117 4.117 14 C -0.126 4.126 15 C 0.165 3.835 16 H 0.041 0.959 17 N -0.601 5.601 18 C 0.179 3.821 19 C -0.270 4.270 20 H 0.059 0.941 21 C -0.036 4.036 22 N -0.927 5.927 23 Si 0.961 3.039 24 H -0.278 1.278 25 H -0.291 1.291 26 H -0.279 1.279 27 C 0.081 3.919 28 N -0.421 5.421 29 C 0.055 3.945 30 H 0.065 0.935 31 H 0.105 0.895 32 H 0.056 0.944 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.183 0.817 38 H 0.163 0.837 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.103 0.897 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.061 0.939 45 H -0.003 1.003 46 H 0.024 0.976 47 H 0.024 0.976 48 H 0.250 0.750 49 H 0.126 0.874 50 H 0.050 0.950 51 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.447 14.096 -11.278 18.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.005 3.995 3 C -0.234 4.234 4 O -0.223 6.223 5 C 0.067 3.933 6 C -0.191 4.191 7 C -0.086 4.086 8 C -0.129 4.129 9 C 0.359 3.641 10 O -0.451 6.451 11 N -0.317 5.317 12 C -0.015 4.015 13 C -0.156 4.156 14 C -0.165 4.165 15 C 0.057 3.943 16 H 0.059 0.941 17 N -0.324 5.324 18 C 0.034 3.966 19 C -0.401 4.401 20 H 0.076 0.924 21 C -0.232 4.232 22 N -0.572 5.572 23 Si 0.789 3.211 24 H -0.204 1.204 25 H -0.217 1.217 26 H -0.205 1.205 27 C -0.043 4.043 28 N -0.133 5.133 29 C -0.106 4.106 30 H 0.084 0.916 31 H 0.123 0.877 32 H 0.075 0.925 33 H 0.106 0.894 34 H 0.118 0.882 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.200 0.800 38 H 0.181 0.819 39 H 0.097 0.903 40 H 0.111 0.889 41 H 0.121 0.879 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.015 0.985 46 H 0.043 0.957 47 H 0.043 0.957 48 H 0.059 0.941 49 H 0.142 0.858 50 H 0.068 0.932 51 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 1.954 13.840 -10.669 17.584 hybrid contribution -1.341 -0.228 -0.342 1.402 sum 0.613 13.612 -11.011 17.519 Atomic orbital electron populations 1.21911 0.91088 1.03219 1.04341 1.22954 0.96689 0.93415 0.86404 1.22390 1.01892 0.94728 1.04433 1.86163 1.27849 1.67321 1.40991 1.20330 0.85947 0.92225 0.94825 1.21983 0.94161 1.03762 0.99173 1.22030 0.95919 0.92546 0.98072 1.21060 0.95420 1.02741 0.93668 1.18017 0.86389 0.80135 0.79517 1.90694 1.47060 1.64624 1.42752 1.48184 1.14041 1.29472 1.39996 1.21836 0.83155 0.93294 1.03231 1.21822 1.00650 0.94258 0.98828 1.21951 0.95338 0.99785 0.99412 1.20801 0.90239 0.90869 0.92382 0.94062 1.43927 1.22078 1.64692 1.01662 1.20458 0.94166 0.98102 0.83830 1.19346 0.89010 1.27300 1.04429 0.92356 1.25849 0.99562 0.99640 0.98184 1.70163 1.28372 1.42432 1.16219 0.85457 0.79522 0.78842 0.77258 1.20397 1.21734 1.20514 1.23223 0.93165 0.95759 0.92138 1.67660 1.04698 1.15376 1.25540 1.22480 0.92862 0.96137 0.99141 0.91603 0.87685 0.92468 0.89402 0.88223 0.91751 0.92191 0.79968 0.81906 0.90284 0.88867 0.87862 0.92345 0.92508 0.92015 0.98488 0.95669 0.95738 0.94125 0.85782 0.93172 0.81820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.56 71.98 0.69 -1.18 16 2 C 0.06 0.91 2.85 30.59 0.09 1.00 16 3 C -0.18 -2.03 9.20 71.98 0.66 -1.37 16 4 O -0.31 -7.35 9.80 -90.44 -0.89 -8.24 16 5 C 0.12 3.06 6.63 22.75 0.15 3.21 16 6 C -0.17 -3.62 8.34 22.53 0.19 -3.43 16 7 C -0.07 -1.72 9.61 22.59 0.22 -1.51 16 8 C 0.01 0.25 6.43 41.86 0.27 0.52 16 9 C 0.57 20.77 7.60 86.81 0.66 21.43 16 10 O -0.57 -21.61 15.94 -3.86 -0.06 -21.67 16 11 N -0.59 -20.83 2.97 -822.18 -2.44 -23.27 16 12 C 0.11 3.08 6.43 86.36 0.56 3.64 16 13 C -0.12 -3.19 6.08 30.67 0.19 -3.01 16 14 C -0.13 -4.30 5.11 30.62 0.16 -4.15 16 15 C 0.17 7.00 2.75 45.07 0.12 7.13 16 16 H 0.04 1.88 7.89 -2.38 -0.02 1.86 16 17 N -0.60 -30.39 2.79 -702.36 -1.96 -32.35 16 18 C 0.18 8.91 7.98 127.77 1.02 9.93 16 19 C -0.27 -15.01 9.49 84.03 0.80 -14.22 16 20 H 0.06 3.21 7.84 -2.91 -0.02 3.19 16 21 C -0.04 -1.99 5.14 84.86 0.44 -1.56 16 22 N -0.93 -54.24 10.96 21.65 0.24 -54.00 16 23 Si 0.96 44.97 29.56 68.60 2.03 47.00 16 24 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 25 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 26 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 27 C 0.08 3.29 5.34 86.36 0.46 3.75 16 28 N -0.42 -15.38 6.39 -184.52 -1.18 -16.56 16 29 C 0.06 1.81 11.14 85.00 0.95 2.76 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.86 16 31 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.09 1.10 6.30 -2.39 -0.02 1.08 16 34 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.06 0.75 6.99 -2.39 -0.02 0.73 16 37 H 0.18 2.50 5.60 -2.91 -0.02 2.48 16 38 H 0.16 3.70 7.80 -2.91 -0.02 3.68 16 39 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 40 H 0.09 2.63 7.00 -2.39 -0.02 2.61 16 41 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.06 1.66 8.14 -2.39 -0.02 1.65 16 43 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.06 2.08 6.75 -2.39 -0.02 2.07 16 45 H 0.00 -0.17 7.76 -2.39 -0.02 -0.19 16 46 H 0.02 1.34 7.07 -2.39 -0.02 1.32 16 47 H 0.02 1.05 6.48 -2.39 -0.02 1.03 16 48 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 49 H 0.13 5.54 4.02 -52.11 -0.21 5.33 16 50 H 0.05 2.12 7.51 -2.38 -0.02 2.10 16 51 H 0.16 5.40 8.06 -2.91 -0.02 5.38 16 Total: -1.00 -69.28 398.07 4.07 -65.21 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: 0.73 Total: 20.94 kcal Atomic # 6 Polarization: 15.34 SS G_CDS: 7.61 Total: 22.95 kcal Atomic # 7 Polarization: -120.85 SS G_CDS: -5.35 Total: -126.19 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -0.95 Total: -29.91 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -69.28 4.07 -65.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027705413.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.570 kcal (2) G-P(sol) polarization free energy of solvation -69.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds