Wall clock time and date at job start Wed Apr 1 2020 04:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47134 * 2 1 4 4 O 1.42904 * 109.47339 * 179.97438 * 3 2 1 5 5 C 1.35426 * 117.00135 * 180.02562 * 4 3 2 6 6 N 1.32231 * 119.79701 * 0.02562 * 5 4 3 7 7 C 1.31885 * 121.79768 * 179.97438 * 6 5 4 8 8 C 1.50704 * 119.40687 * 180.02562 * 7 6 5 9 9 C 1.38354 * 121.18458 * 359.72209 * 7 6 5 10 10 C 1.38336 * 119.45931 * 0.56291 * 9 7 6 11 11 C 1.39993 * 118.34846 * 359.44877 * 10 9 7 12 12 C 1.47520 * 120.60147 * 180.25485 * 11 10 9 13 13 O 1.21583 * 120.00346 * 179.97438 * 12 11 10 14 14 N 1.34781 * 119.99652 * 0.02562 * 12 11 10 15 15 C 1.46496 * 119.99988 * 179.97438 * 14 12 11 16 16 C 1.52994 * 109.47302 * 180.02562 * 15 14 12 17 17 H 1.08998 * 110.89200 * 54.29690 * 16 15 14 18 18 C 1.55156 * 111.00587 * 178.18064 * 16 15 14 19 19 C 1.54330 * 102.94619 * 153.57040 * 18 16 15 20 20 N 1.47021 * 107.26598 * 337.81021 * 19 18 16 21 21 C 1.36941 * 125.64618 * 178.97118 * 20 19 18 22 22 H 1.08001 * 120.00292 * 179.97438 * 21 20 19 23 23 C 1.38820 * 119.99807 * 359.97438 * 21 20 19 24 24 N 1.31615 * 120.00174 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99912 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46960 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47022 * 119.99869 * 25 23 21 28 28 H 1.48494 * 109.47168 * 240.00132 * 25 23 21 29 29 C 1.47460 * 108.72791 * 358.97000 * 20 19 18 30 30 H 1.08996 * 109.47164 * 300.00003 * 1 2 3 31 31 H 1.09001 * 109.46437 * 60.00441 * 1 2 3 32 32 H 1.08999 * 109.46778 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47624 * 239.99567 * 2 1 3 34 34 H 1.09004 * 109.46939 * 119.99514 * 2 1 3 35 35 H 1.08999 * 109.46808 * 59.99520 * 3 2 1 36 36 H 1.08996 * 109.46959 * 299.99867 * 3 2 1 37 37 H 1.09009 * 109.46909 * 90.00271 * 8 7 6 38 38 H 1.08997 * 109.47395 * 209.99798 * 8 7 6 39 39 H 1.08997 * 109.47234 * 330.00205 * 8 7 6 40 40 H 1.08001 * 120.27176 * 180.30987 * 9 7 6 41 41 H 1.08002 * 120.83060 * 179.73053 * 10 9 7 42 42 H 0.97001 * 119.99961 * 0.02562 * 14 12 11 43 43 H 1.09006 * 109.47051 * 299.99953 * 15 14 12 44 44 H 1.09001 * 109.47219 * 59.99772 * 15 14 12 45 45 H 1.08997 * 110.72358 * 271.93691 * 18 16 15 46 46 H 1.09002 * 110.72240 * 35.03200 * 18 16 15 47 47 H 1.09002 * 109.87493 * 97.22032 * 19 18 16 48 48 H 1.09000 * 109.88671 * 218.23452 * 19 18 16 49 49 H 0.96997 * 120.00213 * 180.02562 * 24 23 21 50 50 H 1.09002 * 110.35152 * 265.25508 * 29 20 19 51 51 H 1.08997 * 110.40987 * 142.91668 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4425 0.0006 5 6 4.0839 2.6492 0.0012 6 7 3.3597 3.7556 0.0018 7 6 3.9171 4.9509 0.0029 8 6 3.0399 6.1764 0.0040 9 6 5.2926 5.1000 0.0093 10 6 6.0988 3.9759 0.0028 11 6 5.4850 2.7177 0.0017 12 6 6.2969 1.4860 0.0005 13 8 5.7525 0.3989 0.0000 14 7 7.6424 1.5659 0.0010 15 6 8.4488 0.3429 0.0004 16 6 9.9338 0.7110 0.0017 17 1 10.1674 1.3806 0.8295 18 6 10.8219 -0.5603 0.0471 19 6 12.1297 -0.0927 -0.6257 20 7 11.7996 1.0739 -1.4575 21 6 12.6891 1.7978 -2.2058 22 1 12.3457 2.6417 -2.7858 23 6 14.0322 1.4471 -2.2189 24 7 14.4506 0.4184 -1.5125 25 14 15.2454 2.4342 -3.2402 26 1 14.5275 3.5310 -3.9381 27 1 16.2867 3.0100 -2.3519 28 1 15.8860 1.5459 -4.2430 29 6 10.3522 1.3356 -1.3528 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8935 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6766 1.9563 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 2.8285 6.4709 1.0321 38 1 3.5521 6.9903 -0.5090 39 1 2.1048 5.9543 -0.5100 40 1 5.7333 6.0860 0.0151 41 1 7.1750 4.0665 0.0032 42 1 8.0767 2.4332 0.0025 43 1 8.2195 -0.2440 0.8899 44 1 8.2200 -0.2427 -0.8901 45 1 11.0060 -0.8657 1.0771 46 1 10.3632 -1.3717 -0.5180 47 1 12.8579 0.1886 0.1351 48 1 12.5332 -0.8919 -1.2474 49 1 15.3891 0.1735 -1.5213 50 1 9.8197 0.8543 -2.1731 51 1 10.1590 2.4083 -1.3516 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028900999.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:40 Heat of formation + Delta-G solvation = -25.507321 kcal Electronic energy + Delta-G solvation = -30128.535428 eV Core-core repulsion = 26028.582567 eV Total energy + Delta-G solvation = -4099.952860 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.16965 -39.25037 -38.44997 -37.56689 -34.67143 -34.26015 -33.44520 -32.34321 -31.87538 -29.84497 -28.70245 -28.04688 -26.70246 -25.46880 -23.89031 -23.31407 -22.90791 -21.75876 -20.68169 -19.94808 -19.82152 -18.56955 -17.68071 -17.02921 -16.73691 -16.69373 -15.67753 -15.32647 -15.09893 -14.81776 -14.67048 -14.65835 -14.49011 -14.16263 -13.98010 -13.66443 -13.22599 -13.09685 -13.03412 -12.59500 -12.57928 -12.52198 -12.34243 -12.33098 -11.99052 -11.73907 -11.60292 -11.37799 -11.31608 -10.90121 -10.82093 -10.81871 -10.40956 -10.23776 -10.16689 -10.11783 -9.98116 -9.86710 -9.67128 -9.58697 -8.95902 -8.64166 -8.60849 -6.83529 -5.71896 -3.05374 0.42525 0.97598 2.73537 2.82411 3.18477 3.38773 3.44066 3.46721 3.61890 3.80689 4.32484 4.48509 4.53719 4.59635 4.66286 4.70621 4.83111 4.97949 5.07693 5.12264 5.16448 5.17515 5.18435 5.25441 5.29822 5.35526 5.43092 5.54821 5.55879 5.58311 5.67580 5.69684 5.73495 5.81301 5.90949 5.92083 6.07038 6.08375 6.10676 6.35686 6.47363 6.49672 6.54774 6.69818 6.91867 7.04715 7.46016 7.55991 7.61505 7.63534 7.82819 8.25560 8.30876 9.21618 9.82029 10.48227 11.39898 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014390 B = 0.002127 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.283985 B =13162.237543 C =14629.596836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C 0.066 3.934 4 O -0.268 6.268 5 C 0.379 3.621 6 N -0.548 5.548 7 C 0.191 3.809 8 C -0.108 4.108 9 C -0.220 4.220 10 C -0.004 4.004 11 C -0.215 4.215 12 C 0.562 3.438 13 O -0.520 6.520 14 N -0.723 5.723 15 C 0.135 3.865 16 C -0.118 4.118 17 H 0.079 0.921 18 C -0.135 4.135 19 C 0.177 3.823 20 N -0.606 5.606 21 C -0.228 4.228 22 H 0.078 0.922 23 C -0.010 4.010 24 N -0.921 5.921 25 Si 0.912 3.088 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.291 1.291 29 C 0.142 3.858 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.144 0.856 41 H 0.147 0.853 42 H 0.398 0.602 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.061 0.939 46 H 0.060 0.940 47 H 0.046 0.954 48 H 0.043 0.957 49 H 0.252 0.748 50 H 0.020 0.980 51 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.906 7.980 6.108 27.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.163 4.163 3 C -0.010 4.010 4 O -0.172 6.172 5 C 0.199 3.801 6 N -0.273 5.273 7 C 0.053 3.947 8 C -0.166 4.166 9 C -0.240 4.240 10 C -0.030 4.030 11 C -0.221 4.221 12 C 0.348 3.652 13 O -0.397 6.397 14 N -0.375 5.375 15 C 0.012 3.988 16 C -0.138 4.138 17 H 0.098 0.902 18 C -0.174 4.174 19 C 0.053 3.947 20 N -0.333 5.333 21 C -0.356 4.356 22 H 0.096 0.904 23 C -0.206 4.206 24 N -0.569 5.569 25 Si 0.742 3.258 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.218 1.218 29 C 0.016 3.984 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.162 0.838 41 H 0.165 0.835 42 H 0.233 0.767 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.080 0.920 46 H 0.078 0.922 47 H 0.064 0.936 48 H 0.061 0.939 49 H 0.062 0.938 50 H 0.037 0.963 51 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -26.863 6.777 6.047 28.357 hybrid contribution 1.760 1.150 -0.538 2.170 sum -25.103 7.927 5.509 26.895 Atomic orbital electron populations 1.21670 0.94311 1.02375 1.02069 1.21507 0.95800 0.94933 1.04025 1.22775 0.77701 0.98247 1.02242 1.86524 1.22162 1.23047 1.85487 1.19745 0.88024 0.84821 0.87526 1.67288 1.40304 0.98209 1.21541 1.21178 0.92189 0.91967 0.89368 1.20823 0.99383 0.92805 1.03539 1.21742 0.93797 1.00063 1.08417 1.21691 1.00804 0.90467 0.90021 1.20052 0.91583 0.95139 1.15304 1.17731 0.82049 0.88218 0.77244 1.90820 1.71668 1.28343 1.48849 1.45945 1.05575 1.10531 1.75446 1.21398 0.89416 0.85892 1.02136 1.22619 0.91879 0.99306 0.99964 0.90243 1.22856 0.98142 0.95802 1.00557 1.21141 0.90709 0.89487 0.93400 1.44497 1.01542 1.33064 1.54176 1.19099 0.87887 1.08347 1.20283 0.90443 1.24816 0.97031 0.98442 1.00301 1.69973 1.14571 1.28242 1.44112 0.86046 0.81273 0.79055 0.79393 1.20532 1.21778 1.21768 1.21584 0.86869 0.96964 0.93013 0.92470 0.92450 0.91781 0.90718 0.90765 0.91712 0.91676 0.89794 0.90021 0.90212 0.83826 0.83521 0.76713 0.91576 0.91241 0.91977 0.92164 0.93574 0.93896 0.93804 0.96251 0.94721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 37.16 0.37 -0.59 16 2 C -0.13 -1.13 6.30 -26.73 -0.17 -1.30 16 3 C 0.07 0.69 5.31 37.16 0.20 0.89 16 4 O -0.27 -3.82 8.22 -39.74 -0.33 -4.15 16 5 C 0.38 5.12 7.51 -16.61 -0.12 5.00 16 6 N -0.55 -6.36 9.11 -9.21 -0.08 -6.44 16 7 C 0.19 1.73 6.78 -82.52 -0.56 1.17 16 8 C -0.11 -0.59 10.16 36.01 0.37 -0.23 16 9 C -0.22 -1.81 9.71 -39.50 -0.38 -2.19 16 10 C 0.00 -0.04 9.64 -38.89 -0.37 -0.41 16 11 C -0.21 -2.78 5.90 -104.69 -0.62 -3.40 16 12 C 0.56 8.46 7.77 -12.47 -0.10 8.36 16 13 O -0.52 -9.61 15.19 -16.48 -0.25 -9.86 16 14 N -0.72 -9.66 5.40 -61.36 -0.33 -10.00 16 15 C 0.13 1.99 5.12 -4.05 -0.02 1.97 16 16 C -0.12 -1.95 3.07 -88.47 -0.27 -2.22 16 17 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 18 C -0.13 -2.46 6.42 -24.89 -0.16 -2.62 16 19 C 0.18 4.27 5.37 -3.06 -0.02 4.26 16 20 N -0.61 -15.32 3.40 -170.03 -0.58 -15.90 16 21 C -0.23 -6.31 10.28 -15.05 -0.15 -6.47 16 22 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 23 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 24 N -0.92 -27.06 10.31 55.49 0.57 -26.49 16 25 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 C 0.14 2.83 6.56 -2.51 -0.02 2.81 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 36 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 37 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16 38 H 0.08 0.30 8.07 -51.93 -0.42 -0.12 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.15 1.06 6.52 -52.49 -0.34 0.72 16 42 H 0.40 4.43 6.53 -40.82 -0.27 4.16 16 43 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.07 1.11 8.04 -51.93 -0.42 0.69 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 46 H 0.06 1.05 8.04 -51.93 -0.42 0.63 16 47 H 0.05 1.22 7.38 -51.93 -0.38 0.84 16 48 H 0.04 1.15 7.50 -51.93 -0.39 0.76 16 49 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 50 H 0.02 0.40 7.96 -51.93 -0.41 -0.01 16 51 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 413.82 15.07 6.24 6.24 Total: -1.00 -34.47 413.82 -10.42 -44.89 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -8.51 Total: 0.03 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: -2.13 Total: 4.68 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: -0.42 Total: -58.83 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -0.58 Total: -14.01 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -34.47 -10.42 -44.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028900999.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.382 kcal (2) G-P(sol) polarization free energy of solvation -34.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds