Wall clock time and date at job start Wed Apr 1 2020 04:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47134 * 2 1 4 4 O 1.42904 * 109.47339 * 179.97438 * 3 2 1 5 5 C 1.35426 * 117.00135 * 180.02562 * 4 3 2 6 6 N 1.32231 * 119.79701 * 0.02562 * 5 4 3 7 7 C 1.31885 * 121.79768 * 179.97438 * 6 5 4 8 8 C 1.50704 * 119.40687 * 180.02562 * 7 6 5 9 9 C 1.38354 * 121.18458 * 359.72209 * 7 6 5 10 10 C 1.38336 * 119.45931 * 0.56291 * 9 7 6 11 11 C 1.39993 * 118.34846 * 359.44877 * 10 9 7 12 12 C 1.47520 * 120.60147 * 180.25485 * 11 10 9 13 13 O 1.21583 * 120.00346 * 179.97438 * 12 11 10 14 14 N 1.34781 * 119.99652 * 0.02562 * 12 11 10 15 15 C 1.46496 * 119.99988 * 179.97438 * 14 12 11 16 16 C 1.52994 * 109.47302 * 180.02562 * 15 14 12 17 17 H 1.08998 * 110.89200 * 54.29690 * 16 15 14 18 18 C 1.55156 * 111.00587 * 178.18064 * 16 15 14 19 19 C 1.54330 * 102.94619 * 153.57040 * 18 16 15 20 20 N 1.47021 * 107.26598 * 337.81021 * 19 18 16 21 21 C 1.36941 * 125.64618 * 178.97118 * 20 19 18 22 22 H 1.08001 * 120.00292 * 179.97438 * 21 20 19 23 23 C 1.38820 * 119.99807 * 359.97438 * 21 20 19 24 24 N 1.31615 * 120.00174 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99912 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46960 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47022 * 119.99869 * 25 23 21 28 28 H 1.48494 * 109.47168 * 240.00132 * 25 23 21 29 29 C 1.47460 * 108.72791 * 358.97000 * 20 19 18 30 30 H 1.08996 * 109.47164 * 300.00003 * 1 2 3 31 31 H 1.09001 * 109.46437 * 60.00441 * 1 2 3 32 32 H 1.08999 * 109.46778 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47624 * 239.99567 * 2 1 3 34 34 H 1.09004 * 109.46939 * 119.99514 * 2 1 3 35 35 H 1.08999 * 109.46808 * 59.99520 * 3 2 1 36 36 H 1.08996 * 109.46959 * 299.99867 * 3 2 1 37 37 H 1.09009 * 109.46909 * 90.00271 * 8 7 6 38 38 H 1.08997 * 109.47395 * 209.99798 * 8 7 6 39 39 H 1.08997 * 109.47234 * 330.00205 * 8 7 6 40 40 H 1.08001 * 120.27176 * 180.30987 * 9 7 6 41 41 H 1.08002 * 120.83060 * 179.73053 * 10 9 7 42 42 H 0.97001 * 119.99961 * 0.02562 * 14 12 11 43 43 H 1.09006 * 109.47051 * 299.99953 * 15 14 12 44 44 H 1.09001 * 109.47219 * 59.99772 * 15 14 12 45 45 H 1.08997 * 110.72358 * 271.93691 * 18 16 15 46 46 H 1.09002 * 110.72240 * 35.03200 * 18 16 15 47 47 H 1.09002 * 109.87493 * 97.22032 * 19 18 16 48 48 H 1.09000 * 109.88671 * 218.23452 * 19 18 16 49 49 H 0.96997 * 120.00213 * 180.02562 * 24 23 21 50 50 H 1.09002 * 110.35152 * 265.25508 * 29 20 19 51 51 H 1.08997 * 110.40987 * 142.91668 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4425 0.0006 5 6 4.0839 2.6492 0.0012 6 7 3.3597 3.7556 0.0018 7 6 3.9171 4.9509 0.0029 8 6 3.0399 6.1764 0.0040 9 6 5.2926 5.1000 0.0093 10 6 6.0988 3.9759 0.0028 11 6 5.4850 2.7177 0.0017 12 6 6.2969 1.4860 0.0005 13 8 5.7525 0.3989 0.0000 14 7 7.6424 1.5659 0.0010 15 6 8.4488 0.3429 0.0004 16 6 9.9338 0.7110 0.0017 17 1 10.1674 1.3806 0.8295 18 6 10.8219 -0.5603 0.0471 19 6 12.1297 -0.0927 -0.6257 20 7 11.7996 1.0739 -1.4575 21 6 12.6891 1.7978 -2.2058 22 1 12.3457 2.6417 -2.7858 23 6 14.0322 1.4471 -2.2189 24 7 14.4506 0.4184 -1.5125 25 14 15.2454 2.4342 -3.2402 26 1 14.5275 3.5310 -3.9381 27 1 16.2867 3.0100 -2.3519 28 1 15.8860 1.5459 -4.2430 29 6 10.3522 1.3356 -1.3528 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8935 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6766 1.9563 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 2.8285 6.4709 1.0321 38 1 3.5521 6.9903 -0.5090 39 1 2.1048 5.9543 -0.5100 40 1 5.7333 6.0860 0.0151 41 1 7.1750 4.0665 0.0032 42 1 8.0767 2.4332 0.0025 43 1 8.2195 -0.2440 0.8899 44 1 8.2200 -0.2427 -0.8901 45 1 11.0060 -0.8657 1.0771 46 1 10.3632 -1.3717 -0.5180 47 1 12.8579 0.1886 0.1351 48 1 12.5332 -0.8919 -1.2474 49 1 15.3891 0.1735 -1.5213 50 1 9.8197 0.8543 -2.1731 51 1 10.1590 2.4083 -1.3516 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028900999.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:39 Heat of formation + Delta-G solvation = -47.760898 kcal Electronic energy + Delta-G solvation = -30129.500415 eV Core-core repulsion = 26028.582567 eV Total energy + Delta-G solvation = -4100.917848 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.02486 -40.41126 -39.28742 -39.15286 -36.05500 -34.98755 -34.58776 -33.84378 -32.58527 -31.58974 -30.02683 -29.04831 -27.61571 -27.04585 -25.35604 -24.02741 -23.92314 -22.57190 -22.05438 -21.49504 -21.18794 -19.46931 -18.94832 -18.48812 -17.87586 -17.55045 -17.01380 -16.64138 -16.39445 -16.06325 -15.72044 -15.52851 -15.41955 -15.39512 -15.16859 -14.58961 -14.58357 -14.05403 -13.95132 -13.81728 -13.76243 -13.44635 -13.25846 -13.20201 -13.04632 -13.01362 -12.95882 -12.75268 -12.65283 -12.26946 -12.02074 -11.97080 -11.89078 -11.84299 -11.57556 -11.53736 -11.45619 -11.19092 -10.97457 -10.70709 -10.63475 -10.11464 -9.46932 -8.88649 -7.83944 -5.19383 -0.38884 0.21757 1.46616 1.47792 1.57930 1.83519 1.93404 2.10603 2.50287 2.74170 3.09054 3.34469 3.59411 3.68355 3.70495 3.80499 3.86481 3.91556 3.97997 4.03788 4.04730 4.17960 4.29766 4.35702 4.45951 4.52717 4.54728 4.62895 4.70015 4.72416 4.74809 4.81266 4.82246 4.92452 4.94580 5.00387 5.06686 5.08845 5.09020 5.13719 5.15463 5.30191 5.34727 5.46613 5.47382 5.49502 5.68754 5.79370 6.21129 6.21404 6.50750 6.74060 7.11486 7.21635 7.79228 8.43785 9.26840 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014390 B = 0.002127 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.283985 B =13162.237543 C =14629.596836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.123 4.123 3 C 0.066 3.934 4 O -0.297 6.297 5 C 0.357 3.643 6 N -0.560 5.560 7 C 0.184 3.816 8 C -0.106 4.106 9 C -0.210 4.210 10 C 0.000 4.000 11 C -0.242 4.242 12 C 0.561 3.439 13 O -0.564 6.564 14 N -0.712 5.712 15 C 0.147 3.853 16 C -0.094 4.094 17 H 0.093 0.907 18 C -0.123 4.123 19 C 0.183 3.817 20 N -0.629 5.629 21 C -0.239 4.239 22 H 0.085 0.915 23 C -0.071 4.071 24 N -0.953 5.953 25 Si 0.979 3.021 26 H -0.263 1.263 27 H -0.292 1.292 28 H -0.296 1.296 29 C 0.137 3.863 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.076 0.924 40 H 0.182 0.818 41 H 0.171 0.829 42 H 0.411 0.589 43 H 0.073 0.927 44 H 0.057 0.943 45 H 0.086 0.914 46 H 0.069 0.931 47 H 0.014 0.986 48 H 0.003 0.997 49 H 0.246 0.754 50 H 0.016 0.984 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.273 10.907 6.396 30.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.160 4.160 3 C -0.009 4.009 4 O -0.202 6.202 5 C 0.177 3.823 6 N -0.286 5.286 7 C 0.047 3.953 8 C -0.163 4.163 9 C -0.230 4.230 10 C -0.025 4.025 11 C -0.248 4.248 12 C 0.349 3.651 13 O -0.444 6.444 14 N -0.365 5.365 15 C 0.023 3.977 16 C -0.114 4.114 17 H 0.111 0.889 18 C -0.162 4.162 19 C 0.058 3.942 20 N -0.355 5.355 21 C -0.368 4.368 22 H 0.103 0.897 23 C -0.264 4.264 24 N -0.602 5.602 25 Si 0.807 3.193 26 H -0.187 1.187 27 H -0.219 1.219 28 H -0.223 1.223 29 C 0.013 3.987 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.116 0.884 38 H 0.125 0.875 39 H 0.095 0.905 40 H 0.199 0.801 41 H 0.189 0.811 42 H 0.248 0.752 43 H 0.092 0.908 44 H 0.076 0.924 45 H 0.104 0.896 46 H 0.087 0.913 47 H 0.032 0.968 48 H 0.021 0.979 49 H 0.055 0.945 50 H 0.034 0.966 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -28.258 9.750 6.334 30.557 hybrid contribution 2.125 0.336 -0.646 2.247 sum -26.133 10.086 5.687 28.583 Atomic orbital electron populations 1.21645 0.92102 1.03243 1.02790 1.21525 0.97618 0.93934 1.02959 1.22897 0.76544 0.99067 1.02385 1.86490 1.23671 1.24239 1.85849 1.20000 0.88540 0.85160 0.88618 1.67354 1.40506 0.98630 1.22124 1.21948 0.93547 0.92141 0.87689 1.20953 0.98883 0.91715 1.04713 1.22181 0.93281 1.01217 1.06307 1.22015 1.02171 0.89507 0.88850 1.20015 0.91334 0.95428 1.18024 1.18079 0.82312 0.88492 0.76216 1.90791 1.72468 1.30096 1.51003 1.45779 1.05118 1.10689 1.74916 1.21155 0.88149 0.86421 1.01987 1.22416 0.92492 0.98111 0.98374 0.88861 1.22723 0.95343 0.96783 1.01366 1.20906 0.92984 0.88221 0.92066 1.44824 1.03582 1.33134 1.53941 1.19523 0.88616 1.08480 1.20150 0.89689 1.25686 0.98976 0.99761 1.01930 1.70199 1.14358 1.29908 1.45749 0.85001 0.78783 0.77872 0.77634 1.18710 1.21873 1.22335 1.21769 0.83963 0.98325 0.94690 0.91655 0.91786 0.90839 0.91884 0.91705 0.91357 0.91533 0.88380 0.87473 0.90520 0.80088 0.81123 0.75204 0.90833 0.92448 0.89583 0.91256 0.96798 0.97912 0.94504 0.96626 0.92911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.91 71.98 0.71 -1.02 16 2 C -0.12 -2.30 6.30 30.59 0.19 -2.11 16 3 C 0.07 1.44 5.31 71.98 0.38 1.82 16 4 O -0.30 -8.83 8.22 -66.40 -0.55 -9.38 16 5 C 0.36 9.67 7.51 85.13 0.64 10.31 16 6 N -0.56 -12.50 9.11 -296.06 -2.70 -15.20 16 7 C 0.18 2.88 6.78 42.58 0.29 3.16 16 8 C -0.11 -0.80 10.16 71.24 0.72 -0.08 16 9 C -0.21 -2.69 9.71 22.32 0.22 -2.48 16 10 C 0.00 0.00 9.64 22.72 0.22 0.22 16 11 C -0.24 -6.09 5.90 -19.91 -0.12 -6.20 16 12 C 0.56 16.73 7.77 86.69 0.67 17.40 16 13 O -0.56 -21.33 15.19 16.84 0.26 -21.07 16 14 N -0.71 -17.89 5.40 -466.30 -2.52 -20.41 16 15 C 0.15 4.10 5.12 86.38 0.44 4.55 16 16 C -0.09 -2.93 3.07 -9.40 -0.03 -2.96 16 17 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 18 C -0.12 -4.38 6.42 31.78 0.20 -4.18 16 19 C 0.18 9.04 5.37 86.73 0.47 9.50 16 20 N -0.63 -31.82 3.40 -691.86 -2.35 -34.17 16 21 C -0.24 -13.23 10.28 84.03 0.86 -12.36 16 22 H 0.09 4.45 7.83 -2.91 -0.02 4.43 16 23 C -0.07 -4.03 5.49 84.86 0.47 -3.57 16 24 N -0.95 -57.67 10.31 21.65 0.22 -57.45 16 25 Si 0.98 45.58 29.55 68.60 2.03 47.61 16 26 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 27 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 28 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 29 C 0.14 5.29 6.56 86.85 0.57 5.86 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 34 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 35 H 0.07 1.38 8.10 -2.39 -0.02 1.36 16 36 H 0.07 1.37 8.10 -2.39 -0.02 1.35 16 37 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 38 H 0.11 0.30 8.07 -2.39 -0.02 0.28 16 39 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.18 0.94 8.06 -2.91 -0.02 0.91 16 41 H 0.17 1.85 6.52 -2.91 -0.02 1.83 16 42 H 0.41 8.05 6.53 -92.71 -0.61 7.44 16 43 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 44 H 0.06 1.78 8.04 -2.39 -0.02 1.76 16 45 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 46 H 0.07 2.35 8.04 -2.39 -0.02 2.33 16 47 H 0.01 0.76 7.38 -2.39 -0.02 0.74 16 48 H 0.00 0.15 7.50 -2.39 -0.02 0.13 16 49 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 50 H 0.02 0.63 7.96 -2.39 -0.02 0.61 16 51 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -78.67 413.82 1.62 -77.04 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 0.31 Total: 15.18 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: 6.91 Total: 17.86 kcal Atomic # 7 Polarization: -119.89 SS G_CDS: -7.34 Total: -127.23 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -0.29 Total: -30.45 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -78.67 1.62 -77.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028900999.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.281 kcal (2) G-P(sol) polarization free energy of solvation -78.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds